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All interfaces > All interologs > Interface groups > group119 > 4Y4O_10_1A

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_10
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
10:8 [GLY] 1A:2267 [G] 3.2 1A:2287 [C] base:BB 66.66
10:9 [SER] 1A:2267 [G] 3.58 1A:2287 [C] 77.07
10:9 [SER] 1A:2268 [G] 3.22 1A:2260 [C] sugar:SC 77.07
10:10 [THR] 1A:2268 [G] 3.53 1A:2260 [C] sugar:BB 65.61
10:10 [THR] 1A:2269 [U] 4.75 1A:2259 [A] 65.61
10:10 [THR] 1A:2287 [C] 4.42 1A:2267 [G] 65.61
10:10 [THR] 1A:2288 [G] 4.86 1A:2276 [C] 65.61
10:10 [THR] 1A:2289 [G] 2.84 1A:2275 [C] 65.61
10:11 [ARG] 1A:2291 [G] 4.37 1A:2273 [C] 59.84
10:12 [ASN] 1A:2289 [G] 3.12 1A:2275 [C] 79.25
10:12 [ASN] 1A:2290 [A] 2.98 1A:2274 [U] 79.25
10:12 [ASN] 1A:2291 [G] 4.77 1A:2273 [C] 79.25
10:14 [ARG] 1A:2270 [C] 4.81 1A:2258 [G] 63.79
10:14 [ARG] 1A:2272 [C] 3.79 1A:2292 [G] 63.79
10:14 [ARG] 1A:2273 [C] 3.67 1A:2291 [G] 63.79
10:14 [ARG] 1A:2274 [U] 3.77 1A:2290 [A] 63.79
10:14 [ARG] 1A:2275 [C] 3.68 1A:2289 [G] base:BB 63.79
10:14 [ARG] 1A:2288 [G] 4.88 1A:2276 [C] 63.79
10:14 [ARG] 1A:2289 [G] 3.58 1A:2275 [C] 63.79
10:14 [ARG] 1A:2290 [A] 3.3 1A:2274 [U] 63.79
10:14 [ARG] 1A:2291 [G] 2.98 1A:2273 [C] base:SC 63.79
10:14 [ARG] 1A:2292 [G] 3.24 1A:2272 [C] 63.79
10:15 [ASP] 1A:2273 [C] 4.32 1A:2291 [G] 68.16
10:15 [ASP] 1A:2274 [U] 3.7 1A:2290 [A] 68.16
10:15 [ASP] 1A:2275 [C] 3.21 1A:2289 [G] 68.16
10:15 [ASP] 1A:2276 [C] 3.23 1A:2288 [G] base:SC 68.16
10:15 [ASP] 1A:2277 [U] 3.71 1A:2286 [A] 68.16
10:15 [ASP] 1A:2290 [A] 4.86 1A:2274 [U] 68.16
10:16 [SER] 1A:2273 [C] 3.34 1A:2291 [G] 77.0
10:16 [SER] 1A:2274 [U] 2.57 1A:2290 [A] 77.0
10:16 [SER] 1A:2275 [C] 4.78 1A:2289 [G] 77.0
10:17 [GLN] 1A:2272 [C] 3.04 1A:2292 [G] 8.78
10:17 [GLN] 1A:2273 [C] 2.99 1A:2291 [G] 8.78
10:17 [GLN] 1A:2274 [U] 3.43 1A:2290 [A] 8.78
10:17 [GLN] 1A:2284 [U] 4.84 1A:2279 [A] 8.78
10:18 [ALA] 1A:2283 [G] 3.18 68.06
10:18 [ALA] 1A:2284 [U] 3.26 1A:2279 [A] 68.06
10:19 [LYS] 1A:2273 [C] 2.74 1A:2291 [G] 77.4
10:19 [LYS] 1A:2274 [U] 3.09 1A:2290 [A] 77.4
10:19 [LYS] 1A:2283 [G] 3.64 77.4
10:19 [LYS] 1A:2399 [U] 3.66 1A:2340 [A] 77.4
10:19 [LYS] 1A:2400 [A] 4.29 77.4
10:20 [ARG] 1A:2282 [G] 3.32 72.21
10:20 [ARG] 1A:2283 [G] 2.9 72.21
10:20 [ARG] 1A:2284 [U] 4.33 1A:2279 [A] 72.21
10:20 [ARG] 1A:2367 [C] 5.0 1A:2374 [G] 72.21
10:20 [ARG] 1A:2368 [C] 3.01 1A:2373 [A] 72.21
10:20 [ARG] 1A:2369 [U] 2.94 72.21
10:21 [LEU] 1A:2282 [G] 3.68 74.18
10:21 [LEU] 1A:2283 [G] 4.53 74.18
10:23 [VAL] 1A:904 [C] 3.92 1A:966 [G] 54.41
10:24 [LYS] 1A:2367 [C] 3.38 1A:2374 [G] 90.78
10:24 [LYS] 1A:2368 [C] 2.94 1A:2373 [A] 90.78
10:25 [ARG] 1A:2366 [G] 3.49 1A:2375 [C] 48.32
10:25 [ARG] 1A:2367 [C] 2.81 1A:2374 [G] 48.32
10:26 [TYR] 1A:902 [G] 3.65 1A:968 [U] 39.65
10:26 [TYR] 1A:903 [C] 3.38 1A:967 [G] 39.65
10:26 [TYR] 1A:904 [C] 3.3 1A:966 [G] 39.65
10:26 [TYR] 1A:967 [G] 3.49 1A:903 [C] 39.65
10:26 [TYR] 1A:968 [U] 3.46 1A:902 [G] 39.65
10:26 [TYR] 1A:2281 [A] 4.1 39.65
10:27 [GLU] 1A:902 [G] 2.39 1A:968 [U] base:BB, sugar:SC 63.24
10:27 [GLU] 1A:903 [C] 2.96 1A:967 [G] sugar:BB 63.24
10:27 [GLU] 1A:969 [C] 4.97 1A:901 [G] 63.24
10:28 [GLY] 1A:902 [G] 4.95 1A:968 [U] 84.01
10:28 [GLY] 1A:969 [C] 3.83 1A:901 [G] 84.01
10:29 [GLN] 1A:968 [U] 3.17 1A:902 [G] 61.63
10:29 [GLN] 1A:969 [C] 3.44 1A:901 [G] 61.63
10:30 [VAL] 1A:969 [C] 4.96 1A:901 [G] 0.0
10:32 [ARG] 1A:2364 [A] 4.63 1A:2377 [G] 36.77
10:32 [ARG] 1A:2365 [G] 3.43 1A:2376 [C] 36.77
10:32 [ARG] 1A:2366 [G] 3.81 1A:2375 [C] 36.77
10:33 [ALA] 1A:2364 [A] 3.28 1A:2377 [G] 53.79
10:33 [ALA] 1A:2365 [G] 2.81 1A:2376 [C] sugar:BB 53.79
10:34 [GLY] 1A:2364 [A] 3.46 1A:2377 [G] 90.83
10:34 [GLY] 1A:2365 [G] 2.94 1A:2376 [C] base:BB 90.83
10:34 [GLY] 1A:2366 [G] 4.25 1A:2375 [C] 90.83
10:34 [GLY] 1A:2376 [C] 4.91 1A:2365 [G] 90.83
10:35 [ASN] 1A:2365 [G] 3.04 1A:2376 [C] sugar:SC 54.66
10:35 [ASN] 1A:2366 [G] 3.42 1A:2375 [C] 54.66
10:36 [ILE] 1A:2365 [G] 4.44 1A:2376 [C] 88.33
10:36 [ILE] 1A:2366 [G] 2.89 1A:2375 [C] sugar:BB 88.33
10:36 [ILE] 1A:2367 [C] 3.6 1A:2374 [G] 88.33
10:36 [ILE] 1A:2376 [C] 3.97 1A:2365 [G] 88.33
10:39 [ARG] 1A:2366 [G] 3.24 1A:2375 [C] 80.16
10:39 [ARG] 1A:2367 [C] 2.76 1A:2374 [G] base:SC, sugar:SC 80.16
10:39 [ARG] 1A:2374 [G] 4.41 1A:2367 [C] 80.16
10:39 [ARG] 1A:2375 [C] 2.67 1A:2366 [G] base:SC, sugar:SC 80.16
10:39 [ARG] 1A:2376 [C] 3.31 1A:2365 [G] sugar:SC 80.16
10:41 [ARG] 1A:2274 [U] 4.37 1A:2290 [A] 66.07
10:41 [ARG] 1A:2341 [G] 3.99 1A:2398 [C] 66.07
10:41 [ARG] 1A:2342 [G] 2.53 1A:2397 [C] sugar:BB 66.07
10:41 [ARG] 1A:2343 [G] 3.69 1A:2336 [C] 66.07
10:41 [ARG] 1A:2398 [C] 3.91 1A:2341 [G] 66.07
10:41 [ARG] 1A:2399 [U] 3.03 1A:2340 [A] sugar:SC 66.07
10:42 [GLY] 1A:2342 [G] 3.45 1A:2397 [C] 71.84
10:42 [GLY] 1A:2343 [G] 3.6 1A:2336 [C] 71.84
10:42 [GLY] 1A:2348 [A] 4.71 71.84
10:42 [GLY] 1A:2397 [C] 4.96 1A:2342 [G] 71.84
10:43 [THR] 1A:2343 [G] 3.0 1A:2336 [C] sugar:BB 65.12
10:43 [THR] 1A:2344 [U] 3.6 1A:2335 [G] 65.12
10:43 [THR] 1A:2348 [A] 3.07 65.12
10:44 [ARG] 1A:905 [U] 3.83 1A:965 [G] 58.38
10:44 [ARG] 1A:906 [G] 4.17 58.38
10:44 [ARG] 1A:2342 [G] 3.6 1A:2397 [C] 58.38
10:44 [ARG] 1A:2343 [G] 3.68 1A:2336 [C] 58.38
10:45 [PHE] 1A:904 [C] 3.81 1A:966 [G] 31.98
10:45 [PHE] 1A:905 [U] 3.77 1A:965 [G] 31.98
10:46 [LYS] 1A:2344 [U] 4.23 1A:2335 [G] 53.39
10:53 [MET] 1A:2377 [G] 4.91 1A:2364 [A] 38.9
10:54 [GLY] 1A:2376 [C] 3.5 1A:2365 [G] 68.78
10:54 [GLY] 1A:2377 [G] 3.19 1A:2364 [A] 68.78
10:55 [ARG] 1A:2376 [C] 2.72 1A:2365 [G] 57.26
10:55 [ARG] 1A:2377 [G] 2.87 1A:2364 [A] 57.26
10:55 [ARG] 1A:2395 [G] 4.7 1A:2297 [C] 57.26
10:55 [ARG] 1A:2396 [G] 2.43 1A:2296 [C] 57.26
10:55 [ARG] 1A:2397 [C] 4.76 1A:2342 [G] 57.26
10:55 [ARG] 1A:2398 [C] 3.13 1A:2341 [G] 57.26
10:55 [ARG] 1A:2399 [U] 2.56 1A:2340 [A] 57.26
10:56 [ASP] 1A:2375 [C] 3.53 1A:2366 [G] 74.97
10:56 [ASP] 1A:2376 [C] 3.25 1A:2365 [G] 74.97
10:56 [ASP] 1A:2398 [C] 4.17 1A:2341 [G] 74.97
10:57 [PHE] 1A:2342 [G] 3.93 1A:2397 [C] 45.48
10:57 [PHE] 1A:2343 [G] 4.53 1A:2336 [C] 45.48
10:57 [PHE] 1A:2348 [A] 3.82 45.48
10:57 [PHE] 1A:2397 [C] 3.51 1A:2342 [G] 45.48
10:57 [PHE] 1A:2398 [C] 3.29 1A:2341 [G] 45.48
10:58 [THR] 1A:2376 [C] 3.57 1A:2365 [G] 86.21
10:60 [PHE] 1A:2376 [C] 4.27 1A:2365 [G] 43.13
10:60 [PHE] 1A:2377 [G] 3.57 1A:2364 [A] 43.13
10:60 [PHE] 1A:2378 [A] 4.01 1A:2363 [G] 43.13
10:62 [LEU] 1A:2378 [A] 3.74 1A:2363 [G] 48.63
10:69 [PHE] 1A:903 [C] 3.39 1A:967 [G] 66.34
10:69 [PHE] 1A:904 [C] 3.77 1A:966 [G] 66.34
10:74 [ARG] 1A:2346 [G] 2.66 base:SC, base:SC 11.23
10:75 [LEU] 1A:2346 [G] 3.33 29.27
10:77 [ARG] 1A:904 [C] 2.9 1A:966 [G] 51.53
10:77 [ARG] 1A:905 [U] 2.77 1A:965 [G] 51.53

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group119 4Y4O_10_1A 10: 50s ribosomal protein l27, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P60493 Ribosomal L27 protein Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_10_1A 7OF0_W_A 0.81 0.95 1.78 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 6S0Z_U_A 0.85 0.97 1.01 0.56 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 7N1P_La_23,Dt 0.90 0.97 0.71 0.57 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 7K00_v_a 0.92 0.96 0.83 0.62 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 7RYG_V_A 0.93 0.96 2.44 0.65 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 4Y4O_10_1A 0.99 0.99 0.88 0.98 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 6XHV_10_1A,1x 0.99 0.99 0.95 0.98 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare