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All interfaces > All interologs > Interface groups > group119 > 6XHV_10_1A,1x

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6XHV_10
6XHV_1A,1x
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
10:2 [ALA] 1A:2451 [A] 3.39 1A:2061 [G] 90.17
10:2 [ALA] 1A:2452 [C] 3.7 1A:2504 [U] 90.17
10:2 [ALA] 1A:2494 [G] 3.82 1A:2457 [U] 90.17
10:2 [ALA] 1A:2602 [A] 3.95 base:BB 90.17
10:2 [ALA] 1x:2936 [C] 4.57 1A:2251 [OMG] 90.17
10:2 [ALA] 1x:76 [31H] 2.74 base:BB, base:BB 90.17
10:3 [HIS] 1A:2493 [U] 3.57 1A:2459 [A] 67.74
10:3 [HIS] 1A:2494 [G] 2.84 1A:2457 [U] 67.74
10:3 [HIS] 1A:2495 [G] 4.56 1A:2456 [C] 67.74
10:3 [HIS] 1x:76 [31H] 4.93 67.74
10:4 [LYS] 1A:2251 [OMG] 3.44 1x:2936 [C] 81.08
10:4 [LYS] 1A:2252 [G] 2.89 1x:74 [C] base:SC, base:SC 81.08
10:4 [LYS] 1A:2253 [G] 3.3 81.08
10:4 [LYS] 1x:74 [C] 4.21 1A:2252 [G] 81.08
10:4 [LYS] 1x:2936 [C] 4.89 1A:2251 [OMG] 81.08
10:5 [LYS] 1x:2899 [G] 3.88 1x:2934 [C] 82.22
10:6 [GLY] 1x:2899 [G] 3.44 1x:2934 [C] 70.36
10:7 [LEU] 1A:2255 [G] 4.51 1A:2275 [C] 42.83
10:7 [LEU] 1x:2899 [G] 3.43 1x:2934 [C] 42.83
10:8 [GLY] 1A:2255 [G] 2.96 1A:2275 [C] base:BB 73.11
10:8 [GLY] 1A:2275 [C] 4.53 1A:2255 [G] 73.11
10:8 [GLY] 1x:2899 [G] 3.48 1x:2934 [C] 73.11
10:8 [GLY] 1x:3 [C] 4.2 1x:70 [G] 73.11
10:9 [SER] 1A:2255 [G] 3.81 1A:2275 [C] 70.16
10:9 [SER] 1A:2256 [G] 3.51 1A:2248 [C] 70.16
10:9 [SER] 1A:2275 [C] 4.9 1A:2255 [G] 70.16
10:9 [SER] 1x:3 [C] 4.4 1x:70 [G] 70.16
10:10 [THR] 1A:2256 [G] 3.66 1A:2248 [C] sugar:BB 65.5
10:10 [THR] 1A:2257 [U] 4.93 1A:2247 [A] 65.5
10:10 [THR] 1A:2275 [C] 4.38 1A:2255 [G] 65.5
10:10 [THR] 1A:2276 [G] 4.43 1A:2264 [C] 65.5
10:10 [THR] 1A:2277 [G] 2.77 1A:2263 [C] 65.5
10:11 [ARG] 1A:2279 [G] 3.17 1A:2261 [C] 64.14
10:11 [ARG] 1x:2930 [G] 3.22 1x:51 [C] 64.14
10:11 [ARG] 1x:64 [G] 3.76 1x:2923 [U] 64.14
10:12 [ASN] 1A:2277 [G] 3.33 1A:2263 [C] base/AA stacks 84.25
10:12 [ASN] 1A:2278 [A] 2.49 1A:2262 [U] 84.25
10:12 [ASN] 1A:2279 [G] 4.36 1A:2261 [C] 84.25
10:14 [ARG] 1A:2258 [C] 4.69 1A:2246 [G] 50.52
10:14 [ARG] 1A:2260 [C] 4.13 1A:2280 [G] 50.52
10:14 [ARG] 1A:2261 [C] 3.72 1A:2279 [G] 50.52
10:14 [ARG] 1A:2262 [U] 3.74 1A:2278 [A] 50.52
10:14 [ARG] 1A:2263 [C] 3.71 1A:2277 [G] base:BB 50.52
10:14 [ARG] 1A:2277 [G] 3.73 1A:2263 [C] 50.52
10:14 [ARG] 1A:2278 [A] 3.11 1A:2262 [U] base:BB 50.52
10:14 [ARG] 1A:2279 [G] 2.93 1A:2261 [C] base:SC 50.52
10:14 [ARG] 1A:2280 [G] 3.42 1A:2260 [C] 50.52
10:15 [ASP] 1A:2261 [C] 4.29 1A:2279 [G] 66.85
10:15 [ASP] 1A:2262 [U] 3.75 1A:2278 [A] 66.85
10:15 [ASP] 1A:2263 [C] 2.91 1A:2277 [G] 66.85
10:15 [ASP] 1A:2264 [C] 2.76 1A:2276 [G] base:SC 66.85
10:15 [ASP] 1A:2265 [U] 3.71 1A:2274 [A] 66.85
10:15 [ASP] 1A:2276 [G] 4.77 1A:2264 [C] 66.85
10:15 [ASP] 1A:2278 [A] 4.77 1A:2262 [U] 66.85
10:16 [SER] 1A:2261 [C] 3.46 1A:2279 [G] 69.02
10:16 [SER] 1A:2262 [U] 2.45 1A:2278 [A] 69.02
10:16 [SER] 1A:2263 [C] 4.24 1A:2277 [G] 69.02
10:17 [GLN] 1A:2260 [C] 4.06 1A:2280 [G] 27.41
10:17 [GLN] 1A:2261 [C] 2.75 1A:2279 [G] 27.41
10:17 [GLN] 1A:2262 [U] 3.23 1A:2278 [A] 27.41
10:17 [GLN] 1A:2272 [U] 4.89 1A:2267 [A] 27.41
10:18 [ALA] 1A:2271 [G] 3.2 61.37
10:18 [ALA] 1A:2272 [U] 3.25 1A:2267 [A] 61.37
10:19 [LYS] 1A:2261 [C] 2.82 1A:2279 [G] 77.61
10:19 [LYS] 1A:2262 [U] 3.35 1A:2278 [A] 77.61
10:19 [LYS] 1A:2271 [G] 3.46 77.61
10:19 [LYS] 1A:2387 [U] 3.51 1A:2328 [A] 77.61
10:19 [LYS] 1A:2388 [A] 4.57 77.61
10:20 [ARG] 1A:2270 [G] 3.38 58.63
10:20 [ARG] 1A:2271 [G] 2.82 58.63
10:20 [ARG] 1A:2272 [U] 4.44 1A:2267 [A] 58.63
10:20 [ARG] 1A:2355 [C] 4.96 1A:2362 [G] 58.63
10:20 [ARG] 1A:2356 [C] 3.56 1A:2361 [A] 58.63
10:20 [ARG] 1A:2357 [U] 2.96 58.63
10:21 [LEU] 1A:2270 [G] 3.52 68.75
10:21 [LEU] 1A:2271 [G] 4.5 68.75
10:23 [VAL] 1A:857 [C] 3.93 1A:920 [G] 56.28
10:24 [LYS] 1A:2355 [C] 3.16 1A:2362 [G] 92.1
10:24 [LYS] 1A:2356 [C] 2.59 1A:2361 [A] 92.1
10:25 [ARG] 1A:2354 [G] 3.32 1A:2363 [C] 43.22
10:25 [ARG] 1A:2355 [C] 2.89 1A:2362 [G] 43.22
10:26 [TYR] 1A:855 [G] 3.61 1A:922 [U] 28.63
10:26 [TYR] 1A:856 [C] 3.42 1A:921 [G] 28.63
10:26 [TYR] 1A:857 [C] 3.3 1A:920 [G] 28.63
10:26 [TYR] 1A:921 [G] 3.68 1A:856 [C] 28.63
10:26 [TYR] 1A:922 [U] 3.47 1A:855 [G] 28.63
10:26 [TYR] 1A:2269 [A] 4.0 sugar:SC 28.63
10:27 [GLU] 1A:855 [G] 2.99 1A:922 [U] base:BB, sugar:SC 57.85
10:27 [GLU] 1A:856 [C] 2.92 1A:921 [G] sugar:BB 57.85
10:27 [GLU] 1A:923 [C] 4.88 1A:854 [G] 57.85
10:28 [GLY] 1A:923 [C] 3.8 1A:854 [G] 82.75
10:29 [GLN] 1A:855 [G] 4.89 1A:922 [U] 56.53
10:29 [GLN] 1A:922 [U] 3.2 1A:855 [G] 56.53
10:29 [GLN] 1A:923 [C] 3.27 1A:854 [G] 56.53
10:32 [ARG] 1A:2353 [G] 3.58 1A:2364 [C] 35.51
10:32 [ARG] 1A:2354 [G] 3.89 1A:2363 [C] 35.51
10:33 [ALA] 1A:2352 [A] 3.23 1A:2365 [G] 57.67
10:33 [ALA] 1A:2353 [G] 2.95 1A:2364 [C] sugar:BB 57.67
10:34 [GLY] 1A:2352 [A] 3.48 1A:2365 [G] 93.06
10:34 [GLY] 1A:2353 [G] 2.86 1A:2364 [C] base:BB 93.06
10:34 [GLY] 1A:2354 [G] 4.02 1A:2363 [C] 93.06
10:34 [GLY] 1A:2364 [C] 4.96 1A:2353 [G] 93.06
10:35 [ASN] 1A:2353 [G] 2.65 1A:2364 [C] sugar:SC 50.83
10:35 [ASN] 1A:2354 [G] 3.41 1A:2363 [C] 50.83
10:36 [ILE] 1A:2353 [G] 4.35 1A:2364 [C] 88.91
10:36 [ILE] 1A:2354 [G] 2.85 1A:2363 [C] sugar:BB 88.91
10:36 [ILE] 1A:2355 [C] 3.2 1A:2362 [G] 88.91
10:36 [ILE] 1A:2364 [C] 3.84 1A:2353 [G] 88.91
10:39 [ARG] 1A:2354 [G] 3.36 1A:2363 [C] 82.99
10:39 [ARG] 1A:2355 [C] 2.8 1A:2362 [G] base:SC, sugar:SC 82.99
10:39 [ARG] 1A:2362 [G] 4.27 1A:2355 [C] 82.99
10:39 [ARG] 1A:2363 [C] 2.75 1A:2354 [G] base:SC, sugar:SC 82.99
10:39 [ARG] 1A:2364 [C] 3.17 1A:2353 [G] sugar:SC 82.99
10:40 [GLN] 1A:2386 [C] 4.94 1A:2329 [G] 98.04
10:41 [ARG] 1A:2262 [U] 4.5 1A:2278 [A] 64.06
10:41 [ARG] 1A:2329 [G] 3.85 1A:2386 [C] 64.06
10:41 [ARG] 1A:2330 [G] 2.62 1A:2385 [C] sugar:BB 64.06
10:41 [ARG] 1A:2331 [G] 3.51 1A:2324 [C] 64.06
10:41 [ARG] 1A:2386 [C] 3.78 1A:2329 [G] 64.06
10:41 [ARG] 1A:2387 [U] 3.41 1A:2328 [A] 64.06
10:42 [GLY] 1A:2330 [G] 3.04 1A:2385 [C] 74.63
10:42 [GLY] 1A:2331 [G] 3.55 1A:2324 [C] 74.63
10:42 [GLY] 1A:2336 [A] 4.54 74.63
10:42 [GLY] 1A:2385 [C] 4.8 1A:2330 [G] 74.63
10:42 [GLY] 1A:2386 [C] 4.98 1A:2329 [G] 74.63
10:43 [THR] 1A:2331 [G] 3.09 1A:2324 [C] sugar:BB 68.27
10:43 [THR] 1A:2332 [U] 3.55 1A:2323 [G] 68.27
10:43 [THR] 1A:2336 [A] 3.05 68.27
10:44 [ARG] 1A:858 [U] 3.7 1A:919 [G] 55.83
10:44 [ARG] 1A:859 [G] 4.04 55.83
10:44 [ARG] 1A:2330 [G] 3.51 1A:2385 [C] 55.83
10:44 [ARG] 1A:2331 [G] 3.72 1A:2324 [C] 55.83
10:45 [PHE] 1A:857 [C] 3.62 1A:920 [G] 44.39
10:45 [PHE] 1A:858 [U] 3.5 1A:919 [G] 44.39
10:46 [LYS] 1A:2332 [U] 4.49 1A:2323 [G] 58.25
10:53 [MET] 1A:2365 [G] 4.97 1A:2352 [A] 38.2
10:54 [GLY] 1A:2364 [C] 3.45 1A:2353 [G] 75.06
10:54 [GLY] 1A:2365 [G] 3.13 1A:2352 [A] 75.06
10:55 [ARG] 1A:2364 [C] 2.84 1A:2353 [G] 58.68
10:55 [ARG] 1A:2365 [G] 2.7 1A:2352 [A] 58.68
10:55 [ARG] 1A:2383 [G] 4.79 1A:2285 [C] 58.68
10:55 [ARG] 1A:2384 [G] 2.91 1A:2284 [C] 58.68
10:55 [ARG] 1A:2385 [C] 4.57 1A:2330 [G] 58.68
10:55 [ARG] 1A:2386 [C] 3.21 1A:2329 [G] 58.68
10:55 [ARG] 1A:2387 [U] 2.83 1A:2328 [A] 58.68
10:56 [ASP] 1A:2363 [C] 3.56 1A:2354 [G] 80.31
10:56 [ASP] 1A:2364 [C] 3.08 1A:2353 [G] 80.31
10:56 [ASP] 1A:2386 [C] 3.81 1A:2329 [G] 80.31
10:56 [ASP] 1A:2387 [U] 4.74 1A:2328 [A] 80.31
10:57 [PHE] 1A:2330 [G] 4.08 1A:2385 [C] 46.3
10:57 [PHE] 1A:2331 [G] 4.69 1A:2324 [C] 46.3
10:57 [PHE] 1A:2336 [A] 3.78 46.3
10:57 [PHE] 1A:2385 [C] 3.12 1A:2330 [G] 46.3
10:57 [PHE] 1A:2386 [C] 3.22 1A:2329 [G] 46.3
10:58 [THR] 1A:2364 [C] 3.44 1A:2353 [G] 90.6
10:60 [PHE] 1A:2364 [C] 3.93 1A:2353 [G] 40.95
10:60 [PHE] 1A:2365 [G] 3.47 1A:2352 [A] 40.95
10:60 [PHE] 1A:2366 [A] 4.13 1A:2351 [G] 40.95
10:62 [LEU] 1A:2366 [A] 3.96 1A:2351 [G] 31.96
10:69 [PHE] 1A:856 [C] 3.45 1A:921 [G] 68.47
10:69 [PHE] 1A:857 [C] 3.54 1A:920 [G] 68.47
10:74 [ARG] 1A:2334 [G] 2.75 base:SC, base:SC, base:SC 18.13
10:75 [LEU] 1A:2334 [G] 3.36 11.51
10:77 [ARG] 1A:856 [C] 4.92 1A:921 [G] 48.32
10:77 [ARG] 1A:857 [C] 3.02 1A:920 [G] 48.32
10:77 [ARG] 1A:858 [U] 2.73 1A:919 [G] 48.32

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group119 6XHV_10_1A,1x 10: 50s ribosomal protein l27, Thermus thermophilus hb8 (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) 1x: P-site tRNA, Escherichia coli (synthetic) P60493 Ribosomal L27 protein tRNA & Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4W2F_B0_AX,BA 6XHV_10_1A,1x 0.99 0.97 0.74 0.88 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare
6S0Z_U_A 6XHV_10_1A,1x 0.84 0.96 1.34 0.56 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 6XHV_10_1A,1x 0.99 0.99 0.95 0.98 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6XHV_10_1A,1x 7K00_v_a 0.92 0.96 1.08 0.62 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6XHV_10_1A,1x 7OF0_W_A 0.82 0.94 1.31 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6XHV_10_1A,1x 7RYG_V_A 0.93 0.96 3.01 0.65 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6XHV_10_1A,1x 7N1P_La_23,Dt 0.90 0.97 1.31 0.66 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare