RNAprotDB

All interfaces > All interologs > Interface groups > group119 > 7N1P_La_23,Dt

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7N1P_La
7N1P_23,Dt
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
La:2 [ALA] 23:2451 [A] 4.06 23:2061 [G] 92.75
La:2 [ALA] 23:2452 [C] 4.32 23:2504 [PSU] 92.75
La:2 [ALA] 23:2494 [G] 3.67 23:2457 [PSU] 92.75
La:2 [ALA] Dt:2979 [C] 4.9 23:2251 [OMG] 92.75
La:2 [ALA] Dt:2980 [A] 3.42 base:BB, base:BB 92.75
La:3 [HIS] 23:2493 [U] 3.29 23:2459 [A] 81.51
La:3 [HIS] 23:2494 [G] 2.93 23:2457 [PSU] 81.51
La:4 [LYS] 23:2251 [OMG] 3.38 Dt:2979 [C] 83.28
La:4 [LYS] 23:2252 [G] 2.71 Dt:2978 [C] base:SC, base:SC 83.28
La:4 [LYS] 23:2253 [G] 3.69 83.28
La:4 [LYS] 23:2495 [G] 4.82 23:2456 [C] 83.28
La:4 [LYS] Dt:2978 [C] 4.09 23:2252 [G] 83.28
La:4 [LYS] Dt:2979 [C] 4.82 23:2251 [OMG] 83.28
La:4 [LYS] Dt:2980 [A] 4.82 83.28
La:5 [LYS] Dt:2905 [G] 3.76 Dt:2976 [C] 94.19
La:7 [GLY] Dt:2905 [G] 4.46 Dt:2976 [C] 47.28
La:7 [GLY] Dt:2906 [C] 4.05 Dt:2975 [G] 47.28
La:8 [GLY] 23:2255 [G] 3.08 23:2275 [C] base:BB 74.89
La:8 [GLY] 23:2275 [C] 4.26 23:2255 [G] 74.89
La:8 [GLY] Dt:2906 [C] 3.98 Dt:2975 [G] 74.89
La:8 [GLY] Dt:2907 [C] 4.96 Dt:2974 [G] 74.89
La:9 [SER] 23:2255 [G] 3.75 23:2275 [C] 76.94
La:9 [SER] 23:2256 [G] 3.87 23:2248 [C] 76.94
La:9 [SER] 23:2275 [C] 4.82 23:2255 [G] 76.94
La:9 [SER] Dt:2907 [C] 4.83 Dt:2974 [G] 76.94
La:10 [THR] 23:2256 [G] 3.74 23:2248 [C] sugar:BB 65.91
La:10 [THR] 23:2275 [C] 4.05 23:2255 [G] 65.91
La:10 [THR] 23:2276 [G] 4.62 23:2264 [C] 65.91
La:10 [THR] 23:2277 [G] 2.58 23:2263 [C] 65.91
La:11 [ARG] 23:2279 [G] 3.43 23:2261 [C] 62.7
La:11 [ARG] Dt:2967 [G] 4.11 Dt:2955 [U] 62.7
La:11 [ARG] Dt:2968 [A] 4.48 Dt:2954 [U] 62.7
La:12 [ASN] 23:2276 [G] 4.64 23:2264 [C] 84.41
La:12 [ASN] 23:2277 [G] 3.03 23:2263 [C] base:BB base/AA stacks 84.41
La:12 [ASN] 23:2278 [A] 2.83 23:2262 [U] 84.41
La:12 [ASN] 23:2279 [G] 4.27 23:2261 [C] 84.41
La:14 [ARG] 23:2258 [C] 4.61 23:2246 [G] 71.64
La:14 [ARG] 23:2260 [C] 4.19 23:2280 [G] 71.64
La:14 [ARG] 23:2261 [C] 3.9 23:2279 [G] 71.64
La:14 [ARG] 23:2262 [U] 3.82 23:2278 [A] 71.64
La:14 [ARG] 23:2263 [C] 3.81 23:2277 [G] base:BB 71.64
La:14 [ARG] 23:2277 [G] 3.59 23:2263 [C] 71.64
La:14 [ARG] 23:2278 [A] 3.16 23:2262 [U] base:BB 71.64
La:14 [ARG] 23:2279 [G] 2.73 23:2261 [C] base:SC, base:SC 71.64
La:14 [ARG] 23:2280 [G] 3.26 23:2260 [C] 71.64
La:15 [ASP] 23:2261 [C] 3.74 23:2279 [G] 76.95
La:15 [ASP] 23:2262 [U] 3.49 23:2278 [A] 76.95
La:15 [ASP] 23:2263 [C] 3.05 23:2277 [G] 76.95
La:15 [ASP] 23:2264 [C] 2.94 23:2276 [G] base:SC 76.95
La:15 [ASP] 23:2265 [U] 3.93 23:2274 [A] 76.95
La:15 [ASP] 23:2276 [G] 4.75 23:2264 [C] 76.95
La:15 [ASP] 23:2278 [A] 4.79 23:2262 [U] 76.95
La:15 [ASP] 23:2279 [G] 4.94 23:2261 [C] 76.95
La:16 [SER] 23:2261 [C] 3.49 23:2279 [G] 87.86
La:16 [SER] 23:2262 [U] 2.59 23:2278 [A] 87.86
La:16 [SER] 23:2263 [C] 4.5 23:2277 [G] 87.86
La:17 [GLU] 23:2260 [C] 4.23 23:2280 [G] 40.65
La:17 [GLU] 23:2261 [C] 2.98 23:2279 [G] 40.65
La:17 [GLU] 23:2262 [U] 3.43 23:2278 [A] 40.65
La:17 [GLU] 23:2272 [U] 4.79 23:2267 [A] 40.65
La:18 [ALA] 23:2271 [G] 3.19 70.8
La:18 [ALA] 23:2272 [U] 3.25 23:2267 [A] 70.8
La:19 [LYS] 23:2261 [C] 2.73 23:2279 [G] 82.57
La:19 [LYS] 23:2262 [U] 2.87 23:2278 [A] 82.57
La:19 [LYS] 23:2271 [G] 3.67 82.57
La:19 [LYS] 23:2387 [U] 3.92 23:2328 [A] 82.57
La:19 [LYS] 23:2388 [A] 4.6 82.57
La:20 [ARG] 23:2270 [A] 3.39 72.3
La:20 [ARG] 23:2271 [G] 2.9 72.3
La:20 [ARG] 23:2272 [U] 4.8 23:2267 [A] 72.3
La:20 [ARG] 23:2355 [G] 4.85 23:2362 [C] 72.3
La:20 [ARG] 23:2356 [U] 3.15 23:2361 [G] 72.3
La:20 [ARG] 23:2357 [G] 3.15 23:2360 [G] 72.3
La:21 [LEU] 23:2270 [A] 3.29 83.66
La:21 [LEU] 23:2271 [G] 4.28 83.66
La:22 [GLY] 23:2269 [G] 4.96 95.93
La:23 [VAL] 23:857 [G] 3.57 23:920 [A] 69.47
La:23 [VAL] 23:2269 [G] 4.25 69.47
La:24 [LYS] 23:922 [C] 4.83 23:855 [G] 97.85
La:24 [LYS] 23:2355 [G] 3.61 23:2362 [C] 97.85
La:24 [LYS] 23:2356 [U] 3.56 23:2361 [G] 97.85
La:25 [ARG] 23:2354 [C] 3.83 23:2363 [G] 29.49
La:25 [ARG] 23:2355 [G] 3.35 23:2362 [C] 29.49
La:26 [PHE] 23:855 [G] 4.06 23:922 [C] 12.42
La:26 [PHE] 23:856 [G] 3.39 23:921 [C] 12.42
La:26 [PHE] 23:857 [G] 3.2 23:920 [A] 12.42
La:26 [PHE] 23:922 [C] 3.64 23:855 [G] 12.42
La:26 [PHE] 23:2269 [G] 4.46 12.42
La:27 [GLY] 23:855 [G] 3.09 23:922 [C] base:BB 54.95
La:27 [GLY] 23:856 [G] 2.82 23:921 [C] sugar:BB 54.95
La:27 [GLY] 23:923 [G] 4.78 23:854 [C] 54.95
La:28 [GLY] 23:855 [G] 4.05 23:922 [C] 84.64
La:28 [GLY] 23:923 [G] 3.79 23:854 [C] 84.64
La:29 [GLU] 23:922 [C] 2.44 23:855 [G] sugar:SC 72.97
La:29 [GLU] 23:923 [G] 3.43 23:854 [C] 72.97
La:30 [SER] 23:923 [G] 4.69 23:854 [C] 1.36
La:32 [LEU] 23:2353 [G] 3.33 23:2364 [C] 39.0
La:32 [LEU] 23:2354 [C] 3.88 23:2363 [G] 39.0
La:33 [ALA] 23:2352 [A] 3.2 23:2365 [G] 54.97
La:33 [ALA] 23:2353 [G] 3.03 23:2364 [C] 54.97
La:34 [GLY] 23:2352 [A] 3.31 23:2365 [G] 94.52
La:34 [GLY] 23:2353 [G] 2.49 23:2364 [C] base:BB 94.52
La:34 [GLY] 23:2354 [C] 4.01 23:2363 [G] 94.52
La:34 [GLY] 23:2364 [C] 4.91 23:2353 [G] 94.52
La:34 [GLY] 23:2365 [G] 4.85 23:2352 [A] 94.52
La:35 [SER] 23:2353 [G] 3.14 23:2364 [C] sugar:SC 58.78
La:35 [SER] 23:2354 [C] 3.56 23:2363 [G] 58.78
La:36 [ILE] 23:2353 [G] 4.72 23:2364 [C] 93.72
La:36 [ILE] 23:2354 [C] 2.69 23:2363 [G] sugar:BB 93.72
La:36 [ILE] 23:2355 [G] 3.57 23:2362 [C] 93.72
La:36 [ILE] 23:2363 [G] 3.47 23:2354 [C] 93.72
La:36 [ILE] 23:2364 [C] 4.08 23:2353 [G] 93.72
La:39 [ARG] 23:2355 [G] 3.26 23:2362 [C] sugar:SC 91.75
La:39 [ARG] 23:2356 [U] 4.5 23:2361 [G] 91.75
La:40 [GLN] 23:2386 [A] 4.98 23:2329 [U] 99.0
La:41 [ARG] 23:2262 [U] 4.54 23:2278 [A] 75.4
La:41 [ARG] 23:2330 [G] 2.4 23:2385 [C] sugar:BB 75.4
La:41 [ARG] 23:2331 [G] 3.98 23:2324 [U] 75.4
La:41 [ARG] 23:2386 [A] 3.73 23:2329 [U] 75.4
La:41 [ARG] 23:2387 [U] 3.22 23:2328 [A] sugar:SC 75.4
La:42 [GLY] 23:2330 [G] 3.62 23:2385 [C] 93.4
La:42 [GLY] 23:2331 [G] 3.65 23:2324 [U] 93.4
La:42 [GLY] 23:2336 [A] 4.65 93.4
La:42 [GLY] 23:2385 [C] 4.92 23:2330 [G] 93.4
La:42 [GLY] 23:2386 [A] 4.75 23:2329 [U] 93.4
La:43 [THR] 23:2331 [G] 3.09 23:2324 [U] sugar:BB 76.25
La:43 [THR] 23:2332 [C] 3.75 23:2323 [G] 76.25
La:43 [THR] 23:2336 [A] 2.95 base:SC 76.25
La:44 [LYS] 23:2330 [G] 3.4 23:2385 [C] 54.37
La:44 [LYS] 23:2331 [G] 3.92 23:2324 [U] 54.37
La:45 [PHE] 23:857 [G] 3.63 23:920 [A] 37.9
La:45 [PHE] 23:858 [G] 4.51 23:919 [U] 37.9
La:46 [HIS] 23:2331 [G] 4.59 23:2324 [U] 37.67
La:46 [HIS] 23:2332 [C] 3.01 23:2323 [G] 37.67
La:46 [HIS] 23:2336 [A] 4.71 37.67
La:53 [CYS] 23:2365 [G] 4.82 23:2352 [A] 50.55
La:54 [GLY] 23:2364 [C] 3.65 23:2353 [G] 81.89
La:54 [GLY] 23:2365 [G] 3.32 23:2352 [A] 81.89
La:55 [ARG] 23:2363 [G] 4.77 23:2354 [C] 56.01
La:55 [ARG] 23:2364 [C] 2.76 23:2353 [G] 56.01
La:55 [ARG] 23:2365 [G] 2.83 23:2352 [A] 56.01
La:55 [ARG] 23:2384 [U] 3.24 23:2284 [A] 56.01
La:55 [ARG] 23:2385 [C] 4.88 23:2330 [G] 56.01
La:55 [ARG] 23:2386 [A] 3.43 23:2329 [U] 56.01
La:55 [ARG] 23:2387 [U] 2.84 23:2328 [A] 56.01
La:56 [ASP] 23:2363 [G] 4.25 23:2354 [C] 93.4
La:56 [ASP] 23:2364 [C] 3.26 23:2353 [G] 93.4
La:56 [ASP] 23:2386 [A] 3.67 23:2329 [U] 93.4
La:57 [HIS] 23:2330 [G] 4.53 23:2385 [C] 56.6
La:57 [HIS] 23:2336 [A] 3.74 56.6
La:57 [HIS] 23:2385 [C] 3.45 23:2330 [G] sugar:SC 56.6
La:57 [HIS] 23:2386 [A] 3.29 23:2329 [U] sugar:SC 56.6
La:58 [THR] 23:2364 [C] 3.55 23:2353 [G] 92.98
La:60 [PHE] 23:2364 [C] 4.4 23:2353 [G] 49.03
La:60 [PHE] 23:2365 [G] 3.36 23:2352 [A] 49.03
La:60 [PHE] 23:2366 [A] 3.76 23:2351 [G] 49.03
La:62 [LYS] 23:2366 [A] 3.98 23:2351 [G] 40.49
La:68 [LYS] 23:856 [G] 4.84 23:921 [C] 22.44
La:69 [PHE] 23:856 [G] 3.66 23:921 [C] 67.21
La:69 [PHE] 23:857 [G] 3.52 23:920 [A] 67.21
La:75 [LYS] 23:2333 [A] 3.96 7.87
La:75 [LYS] 23:2334 [U] 3.92 7.87
La:77 [ARG] 23:2332 [C] 3.06 23:2323 [G] 55.11
La:77 [ARG] 23:2333 [A] 2.55 55.11
La:78 [LYS] 23:858 [G] 3.63 23:919 [U] 54.42

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group119 7N1P_La_23,Dt La: 50s ribosomal protein l27, Escherichia coli (strain k12) (natural) 23: 23s rRNA, Escherichia coli k-12 (natural) Dt: tRNA, Escherichia coli k-12 (genetically engineered) P0A7L8 Ribosomal L27 protein tRNA & Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4W2F_B0_AX,BA 7N1P_La_23,Dt 0.90 0.95 1.41 0.56 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare
6S0Z_U_A 7N1P_La_23,Dt 0.84 0.96 1.26 0.67 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 7N1P_La_23,Dt 0.90 0.97 0.71 0.57 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6XHV_10_1A,1x 7N1P_La_23,Dt 0.90 0.97 1.31 0.66 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare