RNAprotDB

Contacts -

4QIK_A	4QIK_C,D	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
A:131 [ARG]	D:41 [G]	3.23	C:3 [A]		base/AA stacks	88.11
A:131 [ARG]	D:42 [G]	2.83		base:SC, base:SC		88.11
A:131 [ARG]	D:43 [A]	3.5			base/AA stacks	88.11
A:132 [PRO]	D:39 [A]	4.35	C:6 [U]			76.95
A:132 [PRO]	D:40 [C]	3.48	C:5 [G]			76.95
A:132 [PRO]	D:41 [G]	4.57	C:3 [A]			76.95
A:135 [ARG]	D:39 [A]	3.94	C:6 [U]			92.22
A:135 [ARG]	D:41 [G]	2.67	C:3 [A]	base:SC		92.22
A:136 [LYS]	D:38 [A]	3.84	C:7 [U]			93.72
A:136 [LYS]	D:39 [A]	3.96	C:6 [U]			93.72
A:160 [SER]	D:38 [A]	4.14	C:7 [U]			87.45
A:164 [ARG]	D:39 [A]	3.53	C:6 [U]			96.72
A:164 [ARG]	D:40 [C]	4.01	C:5 [G]			96.72
A:281 [ARG]	C:9 [U]	4.76	D:36 [A]			81.9
A:300 [PRO]	D:39 [A]	4.65	C:6 [U]			91.6
A:315 [SER]	C:7 [U]	2.94	D:38 [A]	sugar:SC		91.83
A:315 [SER]	C:8 [U]	3.62	D:37 [A]			91.83
A:318 [GLN]	C:7 [U]	2.58	D:38 [A]	base:SC, sugar:SC		91.73
A:318 [GLN]	C:8 [U]	3.19	D:37 [A]			91.73
A:318 [GLN]	D:38 [A]	3.78	C:7 [U]			91.73
A:318 [GLN]	D:39 [A]	3.62	C:6 [U]			91.73
A:319 [SER]	C:8 [U]	3.27	D:37 [A]			94.57
A:319 [SER]	C:9 [U]	2.72	D:36 [A]			94.57
A:322 [ASP]	C:8 [U]	2.67	D:37 [A]	sugar:SC		93.11
A:322 [ASP]	C:9 [U]	3.53	D:36 [A]			93.11
A:322 [ASP]	D:38 [A]	4.55	C:7 [U]			93.11
A:323 [LYS]	C:9 [U]	3.9	D:36 [A]			87.83
A:323 [LYS]	C:10 [C]	3.29	D:35 [G]			87.83

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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