RNAprotDB

Contacts -

4Z31_A	4Z31_C,D	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
A:110 [LYS]	C:4 [U]	4.22	D:27 [A]			76.27
A:111 [PRO]	C:3 [G]	3.53	D:28 [C]			58.26
A:128 [ARG]	C:8 [G]	4.89				89.95
A:128 [ARG]	D:22 [U]	3.37	C:9 [U]		base/AA stacks	89.95
A:128 [ARG]	D:23 [G]	2.75		base:SC, base:SC		89.95
A:129 [PRO]	D:20 [U]	3.97	C:11 [A]			78.85
A:129 [PRO]	D:21 [C]	3.26	C:10 [G]			78.85
A:132 [ARG]	D:20 [U]	2.99	C:11 [A]			92.91
A:132 [ARG]	D:21 [C]	3.3	C:10 [G]			92.91
A:132 [ARG]	D:22 [U]	4.55	C:9 [U]			92.91
A:133 [LYS]	D:19 [U]	3.78	C:12 [A]			94.22
A:133 [LYS]	D:20 [U]	2.87	C:11 [A]			94.22
A:157 [SER]	D:19 [U]	4.98	C:12 [A]			88.65
A:161 [ARG]	D:20 [U]	4.49	C:11 [A]			96.69
A:161 [ARG]	D:21 [C]	4.35	C:10 [G]			96.69
A:278 [ARG]	C:14 [A]	4.97	D:17 [U]			80.65
A:312 [SER]	C:12 [A]	2.65	D:19 [U]	sugar:SC		91.54
A:312 [SER]	C:13 [C]	3.6	D:18 [G]			91.54
A:315 [GLN]	C:12 [A]	2.73	D:19 [U]	base:SC, sugar:SC		90.77
A:315 [GLN]	C:13 [C]	3.39	D:18 [G]		base/AA stacks	90.77
A:315 [GLN]	D:19 [U]	4.58	C:12 [A]			90.77
A:315 [GLN]	D:20 [U]	3.62	C:11 [A]			90.77
A:316 [SER]	C:13 [C]	3.33	D:18 [G]			93.16
A:316 [SER]	C:14 [A]	2.74	D:17 [U]			93.16
A:319 [ASP]	C:13 [C]	2.67	D:18 [G]	sugar:SC		91.59
A:319 [ASP]	C:14 [A]	3.78	D:17 [U]			91.59
A:319 [ASP]	D:19 [U]	4.63	C:12 [A]			91.59
A:320 [LYS]	C:14 [A]	4.11	D:17 [U]			90.4
A:320 [LYS]	C:15 [C]	3.53	D:16 [A]			90.4

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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