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All interfaces > All interologs > Interface groups > group120 > 1JJ2_Y_0

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1JJ2_Y
1JJ2_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Y:10 [ARG] 0:796 [A] 3.09 0:817 [G] sugar:BB 70.6
Y:10 [ARG] 0:797 [A] 2.37 0:816 [G] sugar:BB 70.6
Y:10 [ARG] 0:1772 [C] 4.89 70.6
Y:10 [ARG] 0:1773 [G] 3.16 0:1770 [U] 70.6
Y:11 [THR] 0:796 [A] 4.29 0:817 [G] 70.27
Y:12 [GLY] 0:796 [A] 3.26 0:817 [G] sugar:BB 71.81
Y:12 [GLY] 0:818 [A] 4.3 0:795 [G] 71.81
Y:12 [GLY] 0:1773 [G] 4.21 0:1770 [U] 71.81
Y:13 [ARG] 0:796 [A] 3.83 0:817 [G] 71.3
Y:13 [ARG] 0:818 [A] 2.93 0:795 [G] 71.3
Y:13 [ARG] 0:819 [A] 3.48 0:794 [U] 71.3
Y:13 [ARG] 0:820 [G] 4.61 0:1830 [C] 71.3
Y:14 [PHE] 0:819 [A] 5.0 0:794 [U] 59.86
Y:14 [PHE] 0:820 [G] 3.72 0:1830 [C] 59.86
Y:15 [GLY] 0:1773 [G] 3.22 0:1770 [U] 83.49
Y:16 [PRO] 0:1771 [U] 4.99 0:1885 [A] 55.6
Y:16 [PRO] 0:1773 [G] 3.39 0:1770 [U] 55.6
Y:16 [PRO] 0:1774 [G] 3.92 0:1769 [C] 55.6
Y:16 [PRO] 0:1829 [A] 4.47 0:2018 [A] 55.6
Y:16 [PRO] 0:2018 [A] 3.09 0:1829 [A] 55.6
Y:16 [PRO] 0:2019 [A] 3.37 55.6
Y:17 [ARG] 0:819 [A] 3.24 0:794 [U] 96.47
Y:17 [ARG] 0:820 [G] 2.58 0:1830 [C] 96.47
Y:17 [ARG] 0:821 [U] 3.21 0:793 [A] 96.47
Y:17 [ARG] 0:1829 [A] 3.79 0:2018 [A] 96.47
Y:17 [ARG] 0:1830 [C] 3.61 0:820 [G] 96.47
Y:18 [TYR] 0:820 [G] 2.67 0:1830 [C] 90.08
Y:18 [TYR] 0:1829 [A] 2.92 0:2018 [A] base:BB 90.08
Y:18 [TYR] 0:1830 [C] 3.62 0:820 [G] 90.08
Y:18 [TYR] 0:1885 [A] 3.13 0:1771 [U] sugar:BB 90.08
Y:18 [TYR] 0:1886 [A] 4.33 0:2016 [U] 90.08
Y:19 [GLY] 0:1771 [U] 3.37 0:1885 [A] 98.51
Y:19 [GLY] 0:1829 [A] 4.62 0:2018 [A] 98.51
Y:19 [GLY] 0:1885 [A] 3.51 0:1771 [U] 98.51
Y:19 [GLY] 0:1886 [A] 3.69 0:2016 [U] 98.51
Y:20 [LEU] 0:1771 [U] 3.39 0:1885 [A] 64.93
Y:20 [LEU] 0:1772 [C] 3.33 64.93
Y:20 [LEU] 0:1886 [A] 2.97 0:2016 [U] sugar:BB 64.93
Y:20 [LEU] 0:1887 [U] 4.07 0:2015 [A] 64.93
Y:21 [LYS] 0:1886 [A] 3.75 0:2016 [U] 63.15
Y:21 [LYS] 0:1887 [U] 2.82 0:2015 [A] 63.15
Y:22 [ILE] 0:1847 [A] 3.08 0:1884 [G] 51.04
Y:22 [ILE] 0:1848 [G] 4.09 0:1883 [U] 51.04
Y:22 [ILE] 0:1885 [A] 3.47 0:1771 [U] 51.04
Y:23 [ARG] 0:1771 [U] 2.62 0:1885 [A] sugar:SC 94.5
Y:23 [ARG] 0:1772 [C] 3.43 94.5
Y:23 [ARG] 0:1773 [G] 3.29 0:1770 [U] 94.5
Y:25 [ARG] 0:1849 [G] 4.92 0:1882 [C] 66.48
Y:30 [GLU] 0:1651 [C] 3.83 0:1655 [G] 61.14
Y:33 [HIS] 0:1651 [C] 4.1 0:1655 [G] 44.59
Y:34 [LYS] 0:797 [A] 3.19 0:816 [G] sugar:SC 55.38
Y:36 [LYS] 0:799 [C] 4.87 0:814 [G] 17.37
Y:42 [CYS] 0:1604 [G] 3.54 98.63
Y:46 [LYS] 0:1601 [G] 3.23 0:1593 [C] 40.38
Y:46 [LYS] 0:1602 [C] 3.25 0:1592 [G] 40.38
Y:48 [LYS] 0:1600 [G] 4.96 0:1594 [C] 63.7
Y:48 [LYS] 0:1649 [G] 4.34 0:1536 [C] 63.7
Y:49 [ARG] 0:1650 [C] 4.78 0:1535 [G] 98.38
Y:49 [ARG] 0:1651 [C] 3.03 0:1655 [G] 98.38
Y:49 [ARG] 0:1652 [C] 2.69 98.38
Y:50 [ALA] 0:1651 [C] 4.27 0:1655 [G] 19.5
Y:51 [GLY] 0:1651 [C] 4.45 0:1655 [G] 70.82
Y:51 [GLY] 0:1654 [U] 3.61 70.82
Y:52 [THR] 0:1651 [C] 3.87 0:1655 [G] 57.7
Y:52 [THR] 0:1652 [C] 3.25 57.7
Y:52 [THR] 0:1653 [A] 2.92 57.7
Y:52 [THR] 0:1654 [U] 3.07 base:BB 57.7
Y:58 [GLY] 0:1601 [G] 4.28 0:1593 [C] 44.55
Y:59 [HIS] 0:1602 [C] 4.28 0:1592 [G] 74.83
Y:59 [HIS] 0:1603 [A] 4.35 74.83
Y:59 [HIS] 0:1604 [G] 4.61 74.83
Y:60 [CYS] 0:1604 [G] 3.81 97.74
Y:69 [TYR] 0:1652 [C] 3.62 77.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group120 1JJ2_Y_0 Y: Ribosomal protein l37ae, Haloarcula marismortui (natural) 0: 23s rRNA, Haloarcula marismortui (natural) P60619 Rubredoxin-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_Y_0 1YHQ_Z_0 0.99 1.0 0.22 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 1S72_Z_0 0.99 1.0 0.13 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 3CC2_Z_0 0.99 1.0 0.23 0.57 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_1,2 0.89 0.79 1.06 0.27 Rubredoxin-related compare
1JJ2_Y_0 1VQ8_Z_0 0.99 1.0 0.31 0.59 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_3 0.41 0.71 1.86 0.0 Rubredoxin-related compare
1JJ2_Y_0 7O7Y_Bp_B5 0.78 0.94 2.04 0.47 Rubredoxin-related compare
1JJ2_Y_0 4V9F_Z_0 0.98 1.0 0.24 0.53 Rubredoxin-related Archaeal large subunit ribosomal RNA compare