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All interfaces > All interologs > Interface groups > group120 > 1JJ2_Y_0 vs 1VQ8_Z_0

Interface analysis


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Licorice
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Licorice
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Common contacts -

1JJ2_Y
1JJ2_0
1VQ8_Z
1VQ8_0
Conserved?
Y:42 [CYS] 0:1604 [G] Z:42 [CYS] 0:1604 [G] ✔
Y:69 [TYR] 0:1652 [C] Z:69 [TYR] 0:1652 [C] ✔
Y:11 [THR] 0:796 [A] Z:11 [SER] 0:796 [A] ✔
Y:33 [HIS] 0:1651 [C] Z:33 [MET] 0:1651 [C] ✔
Y:20 [LEU] 0:1771 [U] Z:20 [ARG] 0:1771 [U] ✔
Y:20 [LEU] 0:1772 [C] Z:20 [ARG] 0:1772 [C] ✔
Y:20 [LEU] 0:1886 [A] Z:20 [ARG] 0:1886 [A] ✔
Y:20 [LEU] 0:1887 [U] Z:20 [ARG] 0:1887 [U] ✔
Y:10 [ARG] 0:796 [A] Z:10 [ARG] 0:796 [A] ✔
Y:10 [ARG] 0:797 [A] Z:10 [ARG] 0:797 [A] ✔
Y:10 [ARG] 0:1772 [C] Z:10 [ARG] 0:1772 [C] ✔
Y:10 [ARG] 0:1773 [G] Z:10 [ARG] 0:1773 [G] ✔
Y:21 [LYS] 0:1886 [A] Z:21 [VAL] 0:1886 [A] ✔
Y:21 [LYS] 0:1887 [U] Z:21 [VAL] 0:1887 [U] ✔
Y:23 [ARG] 0:1771 [U] Z:23 [ARG] 0:1771 [U] ✔
Y:23 [ARG] 0:1772 [C] Z:23 [ARG] 0:1772 [C] ✔
Y:23 [ARG] 0:1773 [G] Z:23 [ARG] 0:1773 [G] ✔
Y:16 [PRO] 0:1773 [G] Z:16 [ALA] 0:1773 [G] ✔
Y:16 [PRO] 0:1774 [G] Z:16 [ALA] 0:1774 [G] ✔
Y:16 [PRO] 0:1829 [A] Z:16 [ALA] 0:1829 [A] ✔
Y:16 [PRO] 0:2018 [A] Z:16 [ALA] 0:2018 [A] ✔
Y:16 [PRO] 0:2019 [A] Z:16 [ALA] 0:2019 [A] ✔
Y:51 [GLY] 0:1651 [C] Z:51 [GLY] 0:1651 [C] ✔
Y:51 [GLY] 0:1654 [U] Z:51 [GLY] 0:1654 [U] ✔
Y:30 [GLU] 0:1651 [C] Z:30 [GLU] 0:1651 [C] ✔
Y:59 [HIS] 0:1602 [C] Z:59 [TYR] 0:1602 [C] ✔
Y:59 [HIS] 0:1603 [A] Z:59 [TYR] 0:1603 [A] ✔
Y:59 [HIS] 0:1604 [G] Z:59 [TYR] 0:1604 [G] ✔
Y:13 [ARG] 0:796 [A] Z:13 [ARG] 0:796 [A] ✔
Y:13 [ARG] 0:818 [A] Z:13 [ARG] 0:818 [A] ✔
Y:13 [ARG] 0:819 [A] Z:13 [ARG] 0:819 [A] ✔
Y:13 [ARG] 0:820 [G] Z:13 [ARG] 0:820 [G] ✔
Y:22 [ILE] 0:1847 [A] Z:22 [SER] 0:1847 [A] ✔
Y:22 [ILE] 0:1848 [G] Z:22 [SER] 0:1848 [G] ✔
Y:22 [ILE] 0:1885 [A] Z:22 [SER] 0:1885 [A] ✔
Y:60 [CYS] 0:1604 [G] Z:60 [CYS] 0:1604 [G] ✔
Y:18 [TYR] 0:820 [G] Z:18 [TYR] 0:820 [G] ✔
Y:18 [TYR] 0:1829 [A] Z:18 [TYR] 0:1829 [A] ✔
Y:18 [TYR] 0:1830 [C] Z:18 [TYR] 0:1830 [C] ✔
Y:18 [TYR] 0:1885 [A] Z:18 [TYR] 0:1885 [A] ✔
Y:18 [TYR] 0:1886 [A] Z:18 [TYR] 0:1886 [A] ✔
Y:15 [GLY] 0:1773 [G] Z:15 [GLY] 0:1773 [G] ✔
Y:58 [GLY] 0:1601 [G] Z:58 [SER] 0:1601 [G] ✔
Y:52 [THR] 0:1651 [C] Z:52 [THR] 0:1651 [C] ✔
Y:52 [THR] 0:1652 [C] Z:52 [THR] 0:1652 [C] ✔
Y:52 [THR] 0:1653 [A] Z:52 [THR] 0:1653 [A] ✔
Y:52 [THR] 0:1654 [U] Z:52 [THR] 0:1654 [U] ✔
Y:17 [ARG] 0:819 [A] Z:17 [ARG] 0:819 [A] ✔
Y:17 [ARG] 0:820 [G] Z:17 [ARG] 0:820 [G] ✔
Y:17 [ARG] 0:821 [U] Z:17 [ARG] 0:821 [U] ✔
Y:17 [ARG] 0:1829 [A] Z:17 [ARG] 0:1829 [A] ✔
Y:17 [ARG] 0:1830 [C] Z:17 [ARG] 0:1830 [C] ✔
Y:14 [PHE] 0:820 [G] Z:14 [PHE] 0:820 [G] ✔
Y:46 [LYS] 0:1601 [G] Z:46 [ARG] 0:1601 [G] ✔
Y:46 [LYS] 0:1602 [C] Z:46 [ARG] 0:1602 [C] ✔
Y:19 [GLY] 0:1771 [U] Z:19 [GLY] 0:1771 [U] ✔
Y:19 [GLY] 0:1829 [A] Z:19 [GLY] 0:1829 [A] ✔
Y:19 [GLY] 0:1885 [A] Z:19 [GLY] 0:1885 [A] ✔
Y:19 [GLY] 0:1886 [A] Z:19 [GLY] 0:1886 [A] ✔
Y:49 [ARG] 0:1650 [C] Z:49 [ARG] 0:1650 [C] ✔
Y:49 [ARG] 0:1651 [C] Z:49 [ARG] 0:1651 [C] ✔
Y:49 [ARG] 0:1652 [C] Z:49 [ARG] 0:1652 [C] ✔
Y:50 [ALA] 0:1651 [C] Z:50 [GLN] 0:1651 [C] ✔
Y:12 [GLY] 0:796 [A] Z:12 [GLY] 0:796 [A] ✔
Y:12 [GLY] 0:818 [A] Z:12 [GLY] 0:818 [A] ✔
Y:12 [GLY] 0:1773 [G] Z:12 [GLY] 0:1773 [G] ✔
Y:34 [LYS] 0:797 [A] Z:34 [ASN] 0:797 [A] ✔
Y:16 [PRO] 0:1771 [U] Z:16 [ALA] 0:1771 [U] ❌ 1VQ8_Z_0
Y:14 [PHE] 0:819 [A] Z:14 [PHE] 0:819 [A] ❌ 1VQ8_Z_0
Y:34 [LYS] 0:1650 [C] Z:34 [ASN] 0:1650 [C] ❌ 1JJ2_Y_0
Y:46 [LYS] 0:1600 [G] Z:46 [ARG] 0:1600 [G] ❌ 1JJ2_Y_0
Y:36 [LYS] 0:799 [C] Z:36 [ASP] 0:799 [C] ❌ 1VQ8_Z:36, 1VQ8_0:799 no longer at interface
Y:48 [LYS] 0:1649 [G] Z:48 [ASP] 0:1649 [G] ❌ 1VQ8_Z:48, 1VQ8_0:1649 no longer at interface
Y:25 [ARG] 0:1849 [G] Z:25 [ARG] 0:1849 [G] ❌ 1VQ8_Z:25, 1VQ8_0:1849 no longer at interface
Y:48 [LYS] 0:1600 [G] Z:48 [ASP] 0:1600 [G] ❌ 1VQ8_Z:48 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related Archaeal large subunit ribosomal RNA 1.0 0.31 0.59 0.99 1.0 1.0 1.0 0.99 0.86 0.70 0.50


Other pairs involving 1JJ2_Y_0 or 1VQ8_Z_0

Total number of entries: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_Y_0 1YHQ_Z_0 0.99 1.0 0.22 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 1S72_Z_0 0.99 1.0 0.13 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 3CC2_Z_0 0.99 1.0 0.23 0.57 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_1,2 0.89 0.79 1.06 0.27 Rubredoxin-related compare
1JJ2_Y_0 1VQ8_Z_0 0.99 1.0 0.31 0.59 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_3 0.41 0.71 1.86 0.0 Rubredoxin-related compare
1JJ2_Y_0 7O7Y_Bp_B5 0.78 0.94 2.04 0.47 Rubredoxin-related compare
1JJ2_Y_0 4V9F_Z_0 0.98 1.0 0.24 0.53 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_Z_0 3CC2_Z_0 0.98 1.0 0.27 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_Z_0 7O7Y_Bp_B5 0.75 0.94 1.95 0.37 Rubredoxin-related compare
1VQ8_Z_0 1YHQ_Z_0 1.00 1.0 0.24 0.97 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_Z_0 6AZ3_o_1,2 0.88 0.79 1.05 0.26 Rubredoxin-related compare
1VQ8_Z_0 6AZ3_o_3 0.35 0.71 1.64 0.0 Rubredoxin-related compare
1VQ8_Z_0 4V9F_Z_0 0.98 1.0 0.38 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare