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All interfaces > All interologs > Interface groups > group120 > 1JJ2_Y_0 vs 6AZ3_o_3

Interface analysis


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Common contacts -

1JJ2_Y
1JJ2_0
6AZ3_o
6AZ3_3
Conserved?
Y:42 [CYS] 0:1604 [G] o:42 [CYS] 3:126 [A] ✔
Y:69 [TYR] 0:1652 [C] o:69 [TYR] 3:195 [A] ✔
Y:33 [HIS] 0:1651 [C] o:33 [GLN] 3:194 [A] ✔
Y:51 [GLY] 0:1654 [U] o:51 [ALA] 3:197 [G] ✔
Y:30 [GLU] 0:1651 [C] o:30 [GLU] 3:194 [A] ✔
Y:59 [HIS] 0:1602 [C] o:59 [GLY] 3:124 [G] ✔
Y:60 [CYS] 0:1604 [G] o:60 [CYS] 3:126 [A] ✔
Y:58 [GLY] 0:1601 [G] o:58 [ASP] 3:123 [C] ✔
Y:52 [THR] 0:1652 [C] o:52 [VAL] 3:195 [A] ✔
Y:52 [THR] 0:1653 [A] o:52 [VAL] 3:196 [C] ✔
Y:52 [THR] 0:1654 [U] o:52 [VAL] 3:197 [G] ✔
Y:49 [ARG] 0:1651 [C] o:49 [ARG] 3:194 [A] ✔
Y:49 [ARG] 0:1652 [C] o:49 [ARG] 3:195 [A] ✔
Y:51 [GLY] 0:1651 [C] o:51 [ALA] 3:194 [A] ❌ 6AZ3_o_3
Y:59 [HIS] 0:1603 [A] o:59 [GLY] 3:125 [G] ❌ 6AZ3_o_3
Y:59 [HIS] 0:1604 [G] o:59 [GLY] 3:126 [A] ❌ 6AZ3_o_3
Y:52 [THR] 0:1651 [C] o:52 [VAL] 3:194 [A] ❌ 6AZ3_o_3
Y:49 [ARG] 0:1650 [C] o:49 [ARG] 3:193 [U] ❌ 6AZ3_o_3
Y:50 [ALA] 0:1651 [C] o:50 [LYS] 3:194 [A] ❌ 6AZ3_o_3
Y:13 [ARG] 0:1651 [C] o:13 [ARG] 3:194 [A] ❌ 1JJ2_Y_0
Y:30 [GLU] 0:1650 [C] o:30 [GLU] 3:193 [U] ❌ 1JJ2_Y_0
Y:33 [HIS] 0:1652 [C] o:33 [GLN] 3:195 [A] ❌ 1JJ2_Y_0
Y:34 [LYS] 0:1651 [C] o:34 [HIS] 3:194 [A] ❌ 1JJ2_Y_0
Y:36 [LYS] 0:1600 [G] o:36 [LYS] 3:122 [U] ❌ 1JJ2_Y_0
Y:49 [ARG] 0:1654 [U] o:49 [ARG] 3:197 [G] ❌ 1JJ2_Y_0
Y:50 [ALA] 0:1654 [U] o:50 [LYS] 3:197 [G] ❌ 1JJ2_Y_0
Y:50 [ALA] 0:1649 [G] o:50 [LYS] 3:192 [U] ❌ 1JJ2_Y_0
Y:50 [ALA] 0:1647 [G] o:50 [LYS] 3:190 [C] ❌ 1JJ2_0:1647 no longer at interface
Y:50 [ALA] 0:1648 [G] o:50 [LYS] 3:191 [A] ❌ 1JJ2_0:1648 no longer at interface
Y:56 [MET] 0:1647 [G] o:56 [ARG] 3:190 [C] ❌ 1JJ2_Y:56, 1JJ2_0:1647 no longer at interface
Y:63 [LYS] 0:1647 [G] o:63 [THR] 3:190 [C] ❌ 1JJ2_Y:63, 1JJ2_0:1647 no longer at interface
Y:48 [LYS] 0:1600 [G] o:48 [ARG] 3:122 [U] ❌ 6AZ3_o:48 no longer at interface
Y:48 [LYS] 0:1649 [G] o:48 [ARG] 3:192 [U] ❌ 6AZ3_o:48 no longer at interface
Y:46 [LYS] 0:1601 [G] o:46 [ALA] 3:123 [C] ❌ 6AZ3_o:46 no longer at interface
Y:46 [LYS] 0:1602 [C] o:46 [ALA] 3:124 [G] ❌ 6AZ3_o:46 no longer at interface
Y:41 [VAL] 0:1604 [G] o:41 [PHE] 3:126 [A] ❌ 1JJ2_Y:41 no longer at interface
Y:44 [PHE] 0:1602 [C] o:44 [LYS] 3:124 [G] ❌ 1JJ2_Y:44 no longer at interface
Y:44 [PHE] 0:1604 [G] o:44 [LYS] 3:126 [A] ❌ 1JJ2_Y:44 no longer at interface
Y:44 [PHE] 0:1603 [A] o:44 [LYS] 3:125 [G] ❌ 1JJ2_Y:44 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related 0.71 1.86 0.00 0.9 0.63 0.78 0.85 0.41 0.53 0.07 0.46


Other pairs involving 1JJ2_Y_0 or 6AZ3_o_3

Total number of entries: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_o_3 7O7Y_Bp_B5 0.68 0.92 1.02 0.23 Rubredoxin-related compare
4V9F_Z_0 6AZ3_o_3 0.42 0.75 1.62 0.0 Rubredoxin-related compare
1S72_Z_0 6AZ3_o_3 0.35 0.71 1.66 0.0 Rubredoxin-related compare
1JJ2_Y_0 1YHQ_Z_0 0.99 1.0 0.22 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 1S72_Z_0 0.99 1.0 0.13 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 3CC2_Z_0 0.99 1.0 0.23 0.57 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_1,2 0.89 0.79 1.06 0.27 Rubredoxin-related compare
1JJ2_Y_0 1VQ8_Z_0 0.99 1.0 0.31 0.59 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_3 0.41 0.71 1.86 0.0 Rubredoxin-related compare
1JJ2_Y_0 7O7Y_Bp_B5 0.78 0.94 2.04 0.47 Rubredoxin-related compare
1JJ2_Y_0 4V9F_Z_0 0.98 1.0 0.24 0.53 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_Z_0 6AZ3_o_3 0.41 0.71 1.66 0.0 Rubredoxin-related compare
1VQ8_Z_0 6AZ3_o_3 0.35 0.71 1.64 0.0 Rubredoxin-related compare
3CC2_Z_0 6AZ3_o_3 0.40 0.71 1.65 0.0 Rubredoxin-related compare