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All interfaces > All interologs > Interface groups > group120 > 1JJ2_Y_0 vs 7O7Y_Bp_B5

Interface analysis


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Common contacts -

1JJ2_Y
1JJ2_0
7O7Y_Bp
7O7Y_B5
Conserved?
Y:42 [CYS] 0:1604 [G] Bp:42 [CYS] B5:2517 [A] ✔
Y:69 [TYR] 0:1652 [C] Bp:69 [TRP] B5:2582 [C] ✔
Y:11 [THR] 0:796 [A] Bp:11 [VAL] B5:1508 [A] ✔
Y:33 [HIS] 0:1651 [C] Bp:33 [GLN] B5:2581 [C] ✔
Y:20 [LEU] 0:1771 [U] Bp:20 [ALA] B5:2717 [U] ✔
Y:20 [LEU] 0:1772 [C] Bp:20 [ALA] B5:2718 [C] ✔
Y:20 [LEU] 0:1886 [A] Bp:20 [ALA] B5:3425 [U] ✔
Y:10 [ARG] 0:796 [A] Bp:10 [ILE] B5:1508 [A] ✔
Y:10 [ARG] 0:797 [A] Bp:10 [ILE] B5:1509 [A] ✔
Y:21 [LYS] 0:1886 [A] Bp:21 [SER] B5:3425 [U] ✔
Y:21 [LYS] 0:1887 [U] Bp:21 [SER] B5:3426 [U] ✔
Y:23 [ARG] 0:1771 [U] Bp:23 [ARG] B5:2717 [U] ✔
Y:23 [ARG] 0:1772 [C] Bp:23 [ARG] B5:2718 [C] ✔
Y:23 [ARG] 0:1773 [G] Bp:23 [ARG] B5:2719 [OMG] ✔
Y:16 [PRO] 0:1771 [U] Bp:16 [THR] B5:2717 [U] ✔
Y:16 [PRO] 0:1773 [G] Bp:16 [THR] B5:2719 [OMG] ✔
Y:16 [PRO] 0:1774 [G] Bp:16 [THR] B5:2720 [G] ✔
Y:16 [PRO] 0:1829 [A] Bp:16 [THR] B5:3367 [A] ✔
Y:16 [PRO] 0:2018 [A] Bp:16 [THR] B5:3556 [A] ✔
Y:16 [PRO] 0:2019 [A] Bp:16 [THR] B5:3557 [A2M] ✔
Y:51 [GLY] 0:1654 [U] Bp:51 [ALA] B5:2584 [U] ✔
Y:30 [GLU] 0:1651 [C] Bp:30 [GLU] B5:2581 [C] ✔
Y:59 [HIS] 0:1602 [C] Bp:59 [SER] B5:2515 [C] ✔
Y:13 [ARG] 0:796 [A] Bp:13 [LYS] B5:1508 [A] ✔
Y:13 [ARG] 0:818 [A] Bp:13 [LYS] B5:1530 [A] ✔
Y:13 [ARG] 0:819 [A] Bp:13 [LYS] B5:1531 [G] ✔
Y:13 [ARG] 0:820 [G] Bp:13 [LYS] B5:1532 [G] ✔
Y:22 [ILE] 0:1847 [A] Bp:22 [LEU] B5:3385 [A] ✔
Y:22 [ILE] 0:1848 [G] Bp:22 [LEU] B5:3386 [G] ✔
Y:22 [ILE] 0:1885 [A] Bp:22 [LEU] B5:3424 [A] ✔
Y:60 [CYS] 0:1604 [G] Bp:60 [CYS] B5:2517 [A] ✔
Y:18 [TYR] 0:820 [G] Bp:18 [TYR] B5:1532 [G] ✔
Y:18 [TYR] 0:1829 [A] Bp:18 [TYR] B5:3367 [A] ✔
Y:18 [TYR] 0:1830 [C] Bp:18 [TYR] B5:3368 [C] ✔
Y:18 [TYR] 0:1885 [A] Bp:18 [TYR] B5:3424 [A] ✔
Y:18 [TYR] 0:1886 [A] Bp:18 [TYR] B5:3425 [U] ✔
Y:48 [LYS] 0:1649 [G] Bp:48 [LYS] B5:2579 [G] ✔
Y:15 [GLY] 0:1773 [G] Bp:15 [GLY] B5:2719 [OMG] ✔
Y:52 [THR] 0:1652 [C] Bp:52 [VAL] B5:2582 [C] ✔
Y:52 [THR] 0:1653 [A] Bp:52 [VAL] B5:2583 [U] ✔
Y:52 [THR] 0:1654 [U] Bp:52 [VAL] B5:2584 [U] ✔
Y:17 [ARG] 0:819 [A] Bp:17 [ARG] B5:1531 [G] ✔
Y:17 [ARG] 0:820 [G] Bp:17 [ARG] B5:1532 [G] ✔
Y:17 [ARG] 0:821 [U] Bp:17 [ARG] B5:1533 [U] ✔
Y:17 [ARG] 0:1829 [A] Bp:17 [ARG] B5:3367 [A] ✔
Y:17 [ARG] 0:1830 [C] Bp:17 [ARG] B5:3368 [C] ✔
Y:14 [PHE] 0:819 [A] Bp:14 [TYR] B5:1531 [G] ✔
Y:14 [PHE] 0:820 [G] Bp:14 [TYR] B5:1532 [G] ✔
Y:46 [LYS] 0:1601 [G] Bp:46 [LYS] B5:2514 [C] ✔
Y:19 [GLY] 0:1771 [U] Bp:19 [GLY] B5:2717 [U] ✔
Y:19 [GLY] 0:1829 [A] Bp:19 [GLY] B5:3367 [A] ✔
Y:19 [GLY] 0:1885 [A] Bp:19 [GLY] B5:3424 [A] ✔
Y:19 [GLY] 0:1886 [A] Bp:19 [GLY] B5:3425 [U] ✔
Y:49 [ARG] 0:1651 [C] Bp:49 [ARG] B5:2581 [C] ✔
Y:49 [ARG] 0:1652 [C] Bp:49 [ARG] B5:2582 [C] ✔
Y:50 [ALA] 0:1651 [C] Bp:50 [ARG] B5:2581 [C] ✔
Y:12 [GLY] 0:796 [A] Bp:12 [GLY] B5:1508 [A] ✔
Y:12 [GLY] 0:818 [A] Bp:12 [GLY] B5:1530 [A] ✔
Y:12 [GLY] 0:1773 [G] Bp:12 [GLY] B5:2719 [OMG] ✔
Y:36 [LYS] 0:799 [C] Bp:36 [LYS] B5:1511 [C] ❌ 7O7Y_Bp_B5
Y:20 [LEU] 0:1887 [U] Bp:20 [ALA] B5:3426 [U] ❌ 7O7Y_Bp_B5
Y:10 [ARG] 0:1772 [C] Bp:10 [ILE] B5:2718 [C] ❌ 7O7Y_Bp_B5
Y:10 [ARG] 0:1773 [G] Bp:10 [ILE] B5:2719 [OMG] ❌ 7O7Y_Bp_B5
Y:51 [GLY] 0:1651 [C] Bp:51 [ALA] B5:2581 [C] ❌ 7O7Y_Bp_B5
Y:59 [HIS] 0:1603 [A] Bp:59 [SER] B5:2516 [G] ❌ 7O7Y_Bp_B5
Y:59 [HIS] 0:1604 [G] Bp:59 [SER] B5:2517 [A] ❌ 7O7Y_Bp_B5
Y:48 [LYS] 0:1600 [G] Bp:48 [LYS] B5:2513 [C] ❌ 7O7Y_Bp_B5
Y:58 [GLY] 0:1601 [G] Bp:58 [GLY] B5:2514 [C] ❌ 7O7Y_Bp_B5
Y:52 [THR] 0:1651 [C] Bp:52 [VAL] B5:2581 [C] ❌ 7O7Y_Bp_B5
Y:46 [LYS] 0:1602 [C] Bp:46 [LYS] B5:2515 [C] ❌ 7O7Y_Bp_B5
Y:49 [ARG] 0:1650 [C] Bp:49 [ARG] B5:2580 [C] ❌ 7O7Y_Bp_B5
Y:34 [LYS] 0:797 [A] Bp:34 [HIS] B5:1509 [A] ❌ 7O7Y_Bp_B5
Y:13 [ARG] 0:1651 [C] Bp:13 [LYS] B5:2581 [C] ❌ 1JJ2_Y_0
Y:22 [ILE] 0:1886 [A] Bp:22 [LEU] B5:3425 [U] ❌ 1JJ2_Y_0
Y:33 [HIS] 0:1652 [C] Bp:33 [GLN] B5:2582 [C] ❌ 1JJ2_Y_0
Y:34 [LYS] 0:1650 [C] Bp:34 [HIS] B5:2580 [C] ❌ 1JJ2_Y_0
Y:34 [LYS] 0:1651 [C] Bp:34 [HIS] B5:2581 [C] ❌ 1JJ2_Y_0
Y:36 [LYS] 0:1600 [G] Bp:36 [LYS] B5:2513 [C] ❌ 1JJ2_Y_0
Y:36 [LYS] 0:1649 [G] Bp:36 [LYS] B5:2579 [G] ❌ 1JJ2_Y_0
Y:46 [LYS] 0:1600 [G] Bp:46 [LYS] B5:2513 [C] ❌ 1JJ2_Y_0
Y:48 [LYS] 0:1650 [C] Bp:48 [LYS] B5:2580 [C] ❌ 1JJ2_Y_0
Y:49 [ARG] 0:1654 [U] Bp:49 [ARG] B5:2584 [U] ❌ 1JJ2_Y_0
Y:50 [ALA] 0:1654 [U] Bp:50 [ARG] B5:2584 [U] ❌ 1JJ2_Y_0
Y:25 [ARG] 0:1849 [G] Bp:25 [MET] B5:3387 [C] ❌ 7O7Y_Bp:25, 7O7Y_B5:3387 no longer at interface
Y:58 [GLY] 0:1583 [U] Bp:58 [GLY] B5:2495 [G] ❌ 1JJ2_0:1583 no longer at interface
Y:59 [HIS] 0:1583 [U] Bp:59 [SER] B5:2495 [G] ❌ 1JJ2_0:1583 no longer at interface
Y:60 [CYS] 0:1583 [U] Bp:60 [CYS] B5:2495 [G] ❌ 1JJ2_0:1583 no longer at interface
Y:61 [GLY] 0:1583 [U] Bp:61 [MET] B5:2495 [G] ❌ 1JJ2_Y:61, 1JJ2_0:1583 no longer at interface
Y:41 [VAL] 0:1604 [G] Bp:41 [PHE] B5:2517 [A] ❌ 1JJ2_Y:41 no longer at interface
Y:43 [GLY] 0:1604 [G] Bp:43 [GLY] B5:2517 [A] ❌ 1JJ2_Y:43 no longer at interface
Y:44 [PHE] 0:1604 [G] Bp:44 [LYS] B5:2517 [A] ❌ 1JJ2_Y:44 no longer at interface
Y:44 [PHE] 0:1602 [C] Bp:44 [LYS] B5:2515 [C] ❌ 1JJ2_Y:44 no longer at interface
Y:44 [PHE] 0:1603 [A] Bp:44 [LYS] B5:2516 [G] ❌ 1JJ2_Y:44 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related 0.94 2.04 0.47 0.88 0.94 0.97 0.97 0.78 0.82 0.28 0.29


Other pairs involving 1JJ2_Y_0 or 7O7Y_Bp_B5

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_o_3 7O7Y_Bp_B5 0.68 0.92 1.02 0.23 Rubredoxin-related compare
4V9F_Z_0 7O7Y_Bp_B5 0.76 0.94 1.93 0.39 Rubredoxin-related compare
1S72_Z_0 7O7Y_Bp_B5 0.76 0.94 1.95 0.36 Rubredoxin-related compare
1JJ2_Y_0 1YHQ_Z_0 0.99 1.0 0.22 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 1S72_Z_0 0.99 1.0 0.13 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 3CC2_Z_0 0.99 1.0 0.23 0.57 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_1,2 0.89 0.79 1.06 0.27 Rubredoxin-related compare
1JJ2_Y_0 1VQ8_Z_0 0.99 1.0 0.31 0.59 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 6AZ3_o_3 0.41 0.71 1.86 0.0 Rubredoxin-related compare
1JJ2_Y_0 7O7Y_Bp_B5 0.78 0.94 2.04 0.47 Rubredoxin-related compare
1JJ2_Y_0 4V9F_Z_0 0.98 1.0 0.24 0.53 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_Z_0 7O7Y_Bp_B5 0.76 0.94 1.97 0.36 Rubredoxin-related compare
1VQ8_Z_0 7O7Y_Bp_B5 0.75 0.94 1.95 0.37 Rubredoxin-related compare
3CC2_Z_0 7O7Y_Bp_B5 0.76 0.94 1.95 0.36 Rubredoxin-related compare
6AZ3_o_1,2 7O7Y_Bp_B5 0.95 0.92 0.76 0.57 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare