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All interfaces > All interologs > Interface groups > group120 > 1YHQ_Z_0

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_Z
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Z:10 [ARG] 0:796 [A] 2.62 0:817 [G] sugar:BB 75.31
Z:10 [ARG] 0:797 [A] 2.58 0:816 [G] sugar:BB 75.31
Z:10 [ARG] 0:1772 [C] 4.74 75.31
Z:10 [ARG] 0:1773 [G] 3.54 0:1770 [U] 75.31
Z:11 [SER] 0:796 [A] 4.21 0:817 [G] 62.58
Z:12 [GLY] 0:796 [A] 3.2 0:817 [G] sugar:BB 71.61
Z:12 [GLY] 0:818 [A] 4.22 0:795 [G] 71.61
Z:12 [GLY] 0:1773 [G] 4.12 0:1770 [U] 71.61
Z:13 [ARG] 0:796 [A] 3.82 0:817 [G] 75.83
Z:13 [ARG] 0:818 [A] 2.92 0:795 [G] 75.83
Z:13 [ARG] 0:819 [A] 3.26 0:794 [U] sugar:BB 75.83
Z:13 [ARG] 0:820 [G] 4.55 0:1830 [C] 75.83
Z:14 [PHE] 0:819 [A] 4.89 0:794 [U] 57.25
Z:14 [PHE] 0:820 [G] 3.61 0:1830 [C] 57.25
Z:15 [GLY] 0:1773 [G] 3.23 0:1770 [U] 81.55
Z:16 [ALA] 0:1773 [G] 3.42 0:1770 [U] 59.6
Z:16 [ALA] 0:1774 [G] 3.99 0:1769 [C] 59.6
Z:16 [ALA] 0:1829 [A] 4.63 0:2018 [A] 59.6
Z:16 [ALA] 0:2018 [A] 3.17 0:1829 [A] 59.6
Z:16 [ALA] 0:2019 [A] 4.06 59.6
Z:17 [ARG] 0:819 [A] 3.34 0:794 [U] 92.96
Z:17 [ARG] 0:820 [G] 2.62 0:1830 [C] 92.96
Z:17 [ARG] 0:821 [U] 3.3 0:793 [A] 92.96
Z:17 [ARG] 0:1829 [A] 3.9 0:2018 [A] 92.96
Z:17 [ARG] 0:1830 [C] 3.55 0:820 [G] 92.96
Z:18 [TYR] 0:820 [G] 2.65 0:1830 [C] 88.33
Z:18 [TYR] 0:1829 [A] 3.0 0:2018 [A] base:BB 88.33
Z:18 [TYR] 0:1830 [C] 3.72 0:820 [G] 88.33
Z:18 [TYR] 0:1885 [A] 3.35 0:1771 [U] sugar:BB 88.33
Z:18 [TYR] 0:1886 [A] 4.24 0:2016 [U] 88.33
Z:19 [GLY] 0:1771 [U] 3.26 0:1885 [A] 98.79
Z:19 [GLY] 0:1829 [A] 4.56 0:2018 [A] 98.79
Z:19 [GLY] 0:1885 [A] 3.44 0:1771 [U] 98.79
Z:19 [GLY] 0:1886 [A] 3.83 0:2016 [U] 98.79
Z:20 [ARG] 0:1771 [U] 3.37 0:1885 [A] sugar:SC 63.58
Z:20 [ARG] 0:1772 [C] 4.82 63.58
Z:20 [ARG] 0:1886 [A] 2.98 0:2016 [U] sugar:BB 63.58
Z:20 [ARG] 0:1887 [U] 4.06 0:2015 [A] 63.58
Z:21 [VAL] 0:1886 [A] 3.16 0:2016 [U] 62.93
Z:21 [VAL] 0:1887 [U] 2.81 0:2015 [A] 62.93
Z:22 [SER] 0:1847 [A] 4.27 0:1884 [G] 53.25
Z:22 [SER] 0:1848 [G] 4.67 0:1883 [U] 53.25
Z:22 [SER] 0:1885 [A] 4.58 0:1771 [U] 53.25
Z:23 [ARG] 0:1771 [U] 2.79 0:1885 [A] sugar:SC 92.11
Z:23 [ARG] 0:1772 [C] 3.41 92.11
Z:23 [ARG] 0:1773 [G] 3.34 0:1770 [U] 92.11
Z:25 [ARG] 0:1849 [G] 4.67 0:1882 [C] 56.44
Z:30 [GLU] 0:1651 [C] 3.99 0:1655 [G] 63.52
Z:33 [MET] 0:1651 [C] 4.72 0:1655 [G] 11.89
Z:34 [ASN] 0:797 [A] 3.88 0:816 [G] sugar:SC 56.58
Z:34 [ASN] 0:1650 [C] 4.34 0:1535 [G] 56.58
Z:42 [CYS] 0:1604 [G] 3.53 98.97
Z:46 [ARG] 0:1601 [G] 2.95 0:1593 [C] 39.7
Z:46 [ARG] 0:1602 [C] 2.6 0:1592 [G] 39.7
Z:49 [ARG] 0:1650 [C] 4.76 0:1535 [G] 96.68
Z:49 [ARG] 0:1651 [C] 3.01 0:1655 [G] 96.68
Z:49 [ARG] 0:1652 [C] 2.74 96.68
Z:50 [GLN] 0:1651 [C] 4.06 0:1655 [G] 27.92
Z:51 [GLY] 0:1651 [C] 4.4 0:1655 [G] 68.64
Z:51 [GLY] 0:1654 [U] 3.53 68.64
Z:52 [THR] 0:1651 [C] 3.81 0:1655 [G] 59.64
Z:52 [THR] 0:1652 [C] 3.32 59.64
Z:52 [THR] 0:1653 [A] 2.85 59.64
Z:52 [THR] 0:1654 [U] 3.1 base:BB 59.64
Z:58 [SER] 0:1601 [G] 3.95 0:1593 [C] 55.77
Z:59 [TYR] 0:1602 [C] 4.22 0:1592 [G] 70.07
Z:59 [TYR] 0:1603 [A] 3.09 70.07
Z:59 [TYR] 0:1604 [G] 3.36 base/AA stacks 70.07
Z:60 [CYS] 0:1604 [G] 3.76 98.97
Z:69 [TYR] 0:1652 [C] 3.49 83.06

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group120 1YHQ_Z_0 Z: 50s ribosomal protein l37ae, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P60619 Rubredoxin-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_Y_0 1YHQ_Z_0 0.99 1.0 0.22 0.61 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_Z_0 3CC2_Z_0 0.99 1.0 0.16 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_Z_0 6AZ3_o_1,2 0.90 0.79 0.96 0.29 Rubredoxin-related compare
1YHQ_Z_0 6AZ3_o_3 0.41 0.71 1.66 0.0 Rubredoxin-related compare
1YHQ_Z_0 4V9F_Z_0 0.99 1.0 0.25 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_Z_0 7O7Y_Bp_B5 0.76 0.94 1.97 0.36 Rubredoxin-related compare
1VQ8_Z_0 1YHQ_Z_0 1.00 1.0 0.24 0.97 Rubredoxin-related Archaeal large subunit ribosomal RNA compare