RNAprotDB

All interfaces > All interologs > Interface groups > group120 > 3CC2_Z_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

3CC2_Z
3CC2_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Z:34 [SER] 0:796 [A] 3.15 0:817 [G] 65.73
Z:34 [SER] 0:797 [A] 2.81 0:816 [G] sugar:SC 65.73
Z:35 [SER] 0:796 [A] 4.02 0:817 [G] 75.16
Z:36 [GLY] 0:796 [A] 3.27 0:817 [G] sugar:BB 66.12
Z:36 [GLY] 0:818 [A] 4.14 0:795 [G] 66.12
Z:36 [GLY] 0:1773 [G] 4.11 0:1770 [U] 66.12
Z:37 [ARG] 0:796 [A] 3.84 0:817 [G] 72.07
Z:37 [ARG] 0:818 [A] 3.05 0:795 [G] 72.07
Z:37 [ARG] 0:819 [A] 3.31 0:794 [U] 72.07
Z:37 [ARG] 0:820 [G] 4.6 0:1830 [C] 72.07
Z:38 [PHE] 0:819 [A] 4.93 0:794 [U] 57.67
Z:38 [PHE] 0:820 [G] 3.68 0:1830 [C] 57.67
Z:39 [GLY] 0:1773 [G] 3.19 0:1770 [U] 80.75
Z:40 [ALA] 0:1771 [U] 4.95 0:1885 [A] 61.35
Z:40 [ALA] 0:1773 [G] 3.5 0:1770 [U] 61.35
Z:40 [ALA] 0:1774 [G] 4.03 0:1769 [C] 61.35
Z:40 [ALA] 0:1829 [A] 4.65 0:2018 [A] 61.35
Z:40 [ALA] 0:2018 [A] 3.14 0:1829 [A] 61.35
Z:40 [ALA] 0:2019 [A] 4.0 61.35
Z:41 [ARG] 0:819 [A] 3.28 0:794 [U] 93.82
Z:41 [ARG] 0:820 [G] 2.63 0:1830 [C] 93.82
Z:41 [ARG] 0:821 [U] 3.05 0:793 [A] 93.82
Z:41 [ARG] 0:1829 [A] 3.89 0:2018 [A] 93.82
Z:41 [ARG] 0:1830 [C] 3.67 0:820 [G] 93.82
Z:42 [TYR] 0:820 [G] 2.78 0:1830 [C] 89.61
Z:42 [TYR] 0:1829 [A] 2.98 0:2018 [A] base:BB 89.61
Z:42 [TYR] 0:1830 [C] 3.62 0:820 [G] 89.61
Z:42 [TYR] 0:1885 [A] 3.14 0:1771 [U] sugar:BB 89.61
Z:42 [TYR] 0:1886 [A] 4.24 0:2016 [U] 89.61
Z:43 [GLY] 0:1771 [U] 3.3 0:1885 [A] 97.3
Z:43 [GLY] 0:1829 [A] 4.66 0:2018 [A] 97.3
Z:43 [GLY] 0:1885 [A] 3.5 0:1771 [U] 97.3
Z:43 [GLY] 0:1886 [A] 3.71 0:2016 [U] 97.3
Z:44 [ARG] 0:1771 [U] 3.48 0:1885 [A] sugar:SC 53.68
Z:44 [ARG] 0:1772 [C] 4.81 53.68
Z:44 [ARG] 0:1886 [A] 3.0 0:2016 [U] sugar:BB 53.68
Z:44 [ARG] 0:1887 [U] 4.03 0:2015 [A] 53.68
Z:45 [VAL] 0:1886 [A] 3.24 0:2016 [U] 56.28
Z:45 [VAL] 0:1887 [U] 2.96 0:2015 [A] 56.28
Z:46 [SER] 0:1847 [A] 4.23 0:1884 [G] 51.54
Z:46 [SER] 0:1848 [G] 4.71 0:1883 [U] 51.54
Z:46 [SER] 0:1885 [A] 4.62 0:1771 [U] 51.54
Z:47 [ARG] 0:1771 [U] 2.72 0:1885 [A] sugar:SC 95.58
Z:47 [ARG] 0:1772 [C] 3.37 95.58
Z:47 [ARG] 0:1773 [G] 3.19 0:1770 [U] 95.58
Z:49 [ARG] 0:1849 [G] 4.71 0:1882 [C] 60.32
Z:54 [GLU] 0:1651 [C] 3.59 0:1655 [G] 66.49
Z:57 [MET] 0:1651 [C] 4.64 0:1655 [G] 35.9
Z:58 [ASN] 0:797 [A] 3.85 0:816 [G] sugar:SC 53.87
Z:58 [ASN] 0:1650 [C] 4.4 0:1535 [G] 53.87
Z:66 [CYS] 0:1604 [G] 3.58 99.0
Z:70 [ARG] 0:1601 [G] 2.94 0:1593 [C] 47.53
Z:70 [ARG] 0:1602 [C] 2.69 0:1592 [G] 47.53
Z:73 [ARG] 0:1650 [C] 4.75 0:1535 [G] 89.13
Z:73 [ARG] 0:1651 [C] 3.1 0:1655 [G] 89.13
Z:73 [ARG] 0:1652 [C] 2.67 89.13
Z:74 [GLN] 0:1651 [C] 4.07 0:1655 [G] 29.61
Z:75 [GLY] 0:1651 [C] 4.45 0:1655 [G] 67.45
Z:75 [GLY] 0:1654 [U] 3.56 67.45
Z:76 [THR] 0:1651 [C] 3.89 0:1655 [G] 53.31
Z:76 [THR] 0:1652 [C] 3.25 53.31
Z:76 [THR] 0:1653 [A] 2.97 53.31
Z:76 [THR] 0:1654 [U] 3.17 base:BB 53.31
Z:82 [SER] 0:1601 [G] 3.93 0:1593 [C] 42.9
Z:83 [TYR] 0:1602 [C] 4.38 0:1592 [G] 72.0
Z:83 [TYR] 0:1603 [A] 3.05 72.0
Z:83 [TYR] 0:1604 [G] 3.37 base/AA stacks 72.0
Z:84 [CYS] 0:1604 [G] 3.74 98.97
Z:93 [TYR] 0:1652 [C] 3.51 78.26

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group120 3CC2_Z_0 Z: 50s ribosomal protein l37ae, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P60619 Rubredoxin-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1S72_Z_0 3CC2_Z_0 0.99 1.0 0.19 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 3CC2_Z_0 0.99 1.0 0.23 0.57 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_Z_0 3CC2_Z_0 0.99 1.0 0.16 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_Z_0 3CC2_Z_0 0.98 1.0 0.27 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
3CC2_Z_0 4V9F_Z_0 1.00 1.0 0.22 1.0 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
3CC2_Z_0 6AZ3_o_1,2 0.90 0.79 1.01 0.29 Rubredoxin-related compare
3CC2_Z_0 7O7Y_Bp_B5 0.76 0.94 1.95 0.36 Rubredoxin-related compare
3CC2_Z_0 6AZ3_o_3 0.40 0.71 1.65 0.0 Rubredoxin-related compare