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All interfaces > All interologs > Interface groups > group120 > 4V9F_Z_0

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4V9F_Z
4V9F_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Z:7 [LYS] 0:810 [G] 4.5 0:803 [C] 85.12
Z:7 [LYS] 0:1773 [G] 4.9 0:1770 [U] 85.12
Z:8 [THR] 0:796 [A] 4.68 0:817 [G] 66.74
Z:8 [THR] 0:1772 [C] 3.82 66.74
Z:8 [THR] 0:1773 [G] 3.04 0:1770 [U] 66.74
Z:9 [GLY] 0:796 [A] 2.68 0:817 [G] sugar:BB 53.83
Z:9 [GLY] 0:797 [A] 3.13 0:816 [G] 53.83
Z:10 [SER] 0:796 [A] 3.31 0:817 [G] 74.32
Z:10 [SER] 0:797 [A] 3.6 0:816 [G] 74.32
Z:11 [SER] 0:796 [A] 4.12 0:817 [G] 68.39
Z:12 [GLY] 0:796 [A] 3.32 0:817 [G] sugar:BB 64.79
Z:12 [GLY] 0:818 [A] 4.2 0:795 [G] 64.79
Z:12 [GLY] 0:1773 [G] 4.29 0:1770 [U] 64.79
Z:13 [ARG] 0:796 [A] 3.71 0:817 [G] 74.74
Z:13 [ARG] 0:818 [A] 3.14 0:795 [G] 74.74
Z:13 [ARG] 0:819 [A] 3.21 0:794 [U] sugar:BB 74.74
Z:13 [ARG] 0:820 [G] 4.66 0:1830 [C] 74.74
Z:14 [PHE] 0:819 [A] 4.92 0:794 [U] 66.37
Z:14 [PHE] 0:820 [G] 3.58 0:1830 [C] 66.37
Z:15 [GLY] 0:1773 [G] 3.24 0:1770 [U] 86.41
Z:16 [ALA] 0:1771 [U] 4.81 0:1885 [A] 61.08
Z:16 [ALA] 0:1773 [G] 3.62 0:1770 [U] 61.08
Z:16 [ALA] 0:1774 [G] 3.85 0:1769 [C] 61.08
Z:16 [ALA] 0:1829 [A] 4.66 0:2018 [A] 61.08
Z:16 [ALA] 0:2018 [A] 3.14 0:1829 [A] 61.08
Z:16 [ALA] 0:2019 [A] 3.92 61.08
Z:17 [ARG] 0:819 [A] 3.26 0:794 [U] 94.78
Z:17 [ARG] 0:820 [G] 2.55 0:1830 [C] 94.78
Z:17 [ARG] 0:821 [U] 3.14 0:793 [A] 94.78
Z:17 [ARG] 0:1829 [A] 3.83 0:2018 [A] 94.78
Z:17 [ARG] 0:1830 [C] 3.67 0:820 [G] 94.78
Z:18 [TYR] 0:819 [A] 4.88 0:794 [U] 90.24
Z:18 [TYR] 0:820 [G] 2.49 0:1830 [C] 90.24
Z:18 [TYR] 0:1829 [A] 2.9 0:2018 [A] base:BB 90.24
Z:18 [TYR] 0:1830 [C] 3.8 0:820 [G] 90.24
Z:18 [TYR] 0:1885 [A] 3.17 0:1771 [U] sugar:BB 90.24
Z:18 [TYR] 0:1886 [A] 4.43 0:2016 [U] 90.24
Z:19 [GLY] 0:1771 [U] 3.3 0:1885 [A] 98.64
Z:19 [GLY] 0:1829 [A] 4.53 0:2018 [A] 98.64
Z:19 [GLY] 0:1885 [A] 3.35 0:1771 [U] 98.64
Z:19 [GLY] 0:1886 [A] 3.67 0:2016 [U] 98.64
Z:20 [ARG] 0:1771 [U] 3.91 0:1885 [A] 61.71
Z:20 [ARG] 0:1772 [C] 4.81 61.71
Z:20 [ARG] 0:1886 [A] 2.87 0:2016 [U] sugar:BB 61.71
Z:20 [ARG] 0:1887 [U] 4.21 0:2015 [A] 61.71
Z:21 [VAL] 0:1886 [A] 3.21 0:2016 [U] 54.32
Z:21 [VAL] 0:1887 [U] 2.99 0:2015 [A] 54.32
Z:22 [SER] 0:1847 [A] 4.37 0:1884 [G] 56.12
Z:22 [SER] 0:1848 [G] 4.67 0:1883 [U] 56.12
Z:22 [SER] 0:1885 [A] 4.95 0:1771 [U] 56.12
Z:23 [ARG] 0:1771 [U] 2.61 0:1885 [A] sugar:SC 93.1
Z:23 [ARG] 0:1772 [C] 3.03 93.1
Z:23 [ARG] 0:1773 [G] 3.73 0:1770 [U] 93.1
Z:25 [ARG] 0:1849 [G] 4.8 0:1882 [C] 62.77
Z:30 [GLU] 0:1651 [C] 4.23 0:1655 [G] 62.4
Z:33 [MET] 0:1651 [C] 3.75 0:1655 [G] 55.33
Z:34 [ASN] 0:797 [A] 3.93 0:816 [G] sugar:SC 57.77
Z:34 [ASN] 0:1650 [C] 4.35 0:1535 [G] 57.77
Z:42 [CYS] 0:1604 [G] 3.53 98.97
Z:46 [ARG] 0:1600 [G] 4.93 0:1594 [C] 50.0
Z:46 [ARG] 0:1601 [G] 2.58 0:1593 [C] 50.0
Z:46 [ARG] 0:1602 [C] 3.03 0:1592 [G] 50.0
Z:49 [ARG] 0:1650 [C] 4.67 0:1535 [G] 89.54
Z:49 [ARG] 0:1651 [C] 3.03 0:1655 [G] 89.54
Z:49 [ARG] 0:1652 [C] 2.8 89.54
Z:50 [GLN] 0:1651 [C] 4.15 0:1655 [G] 37.67
Z:51 [GLY] 0:1651 [C] 4.47 0:1655 [G] 66.82
Z:51 [GLY] 0:1654 [U] 3.52 66.82
Z:52 [THR] 0:1651 [C] 3.9 0:1655 [G] 62.33
Z:52 [THR] 0:1652 [C] 3.41 62.33
Z:52 [THR] 0:1653 [A] 2.92 62.33
Z:52 [THR] 0:1654 [U] 3.15 base:BB 62.33
Z:58 [SER] 0:1601 [G] 3.79 0:1593 [C] 58.41
Z:59 [TYR] 0:1602 [C] 4.26 0:1592 [G] 74.93
Z:59 [TYR] 0:1603 [A] 3.0 74.93
Z:59 [TYR] 0:1604 [G] 3.46 base/AA stacks 74.93
Z:60 [CYS] 0:1604 [G] 3.86 98.97
Z:69 [TYR] 0:1652 [C] 3.38 78.68

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group120 4V9F_Z_0 Z: 50s ribosomal protein l37ae, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P60619 Rubredoxin-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4V9F_Z_0 7O7Y_Bp_B5 0.76 0.94 1.93 0.39 Rubredoxin-related compare
4V9F_Z_0 6AZ3_o_3 0.42 0.75 1.62 0.0 Rubredoxin-related compare
4V9F_Z_0 6AZ3_o_1,2 0.87 0.8 1.14 0.33 Rubredoxin-related compare
1S72_Z_0 4V9F_Z_0 0.99 1.0 0.21 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1JJ2_Y_0 4V9F_Z_0 0.98 1.0 0.24 0.53 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1YHQ_Z_0 4V9F_Z_0 0.99 1.0 0.25 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_Z_0 4V9F_Z_0 0.98 1.0 0.38 0.96 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
3CC2_Z_0 4V9F_Z_0 1.00 1.0 0.22 1.0 Rubredoxin-related Archaeal large subunit ribosomal RNA compare