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All interfaces > All interologs > Interface groups > group120 > 6AZ3_o_1,2

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Conservation*

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6AZ3_o
6AZ3_1,2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
o:2 [ALA] 1:903 [A] 3.33 1:892 [C] 55.1
o:2 [ALA] 1:904 [G] 2.62 1:891 [C] base:BB, base:BB 55.1
o:2 [ALA] 1:905 [G] 4.04 1:890 [C] 55.1
o:3 [LYS] 1:901 [C] 4.06 1:894 [G] 25.7
o:3 [LYS] 1:902 [C] 3.89 1:893 [G] 25.7
o:3 [LYS] 1:903 [A] 4.26 1:892 [C] 25.7
o:4 [ARG] 1:887 [A] 3.23 1:908 [G] 60.4
o:4 [ARG] 1:888 [A] 2.48 1:907 [G] 60.4
o:4 [ARG] 1:889 [G] 2.62 1:906 [U] base:SC, base:SC 60.4
o:4 [ARG] 1:890 [C] 3.33 1:905 [G] 60.4
o:4 [ARG] 1:905 [G] 3.82 1:890 [C] base:SC 60.4
o:4 [ARG] 1:906 [U] 3.45 1:889 [G] base:SC 60.4
o:4 [ARG] 1:907 [G] 3.62 1:888 [A] base/AA stacks 60.4
o:4 [ARG] 2:1893 [G] 4.91 2:1890 [U] 60.4
o:5 [THR] 1:887 [A] 3.62 1:908 [G] 83.0
o:5 [THR] 1:888 [A] 2.98 1:907 [G] 83.0
o:5 [THR] 2:1893 [G] 3.39 2:1890 [U] 83.0
o:6 [VAL] 2:1892 [C] 4.14 76.8
o:6 [VAL] 2:1893 [G] 2.76 2:1890 [U] 76.8
o:7 [LYS] 2:1892 [C] 3.37 83.2
o:7 [LYS] 2:1893 [G] 2.74 2:1890 [U] 83.2
o:8 [MET] 1:887 [A] 4.49 1:908 [G] 70.4
o:8 [MET] 1:888 [A] 4.53 1:907 [G] 70.4
o:8 [MET] 2:1892 [C] 3.57 70.4
o:8 [MET] 2:1893 [G] 2.87 2:1890 [U] 70.4
o:9 [GLY] 1:887 [A] 2.59 1:908 [G] sugar:BB 58.2
o:9 [GLY] 1:888 [A] 3.0 1:907 [G] 58.2
o:10 [VAL] 1:887 [A] 3.96 1:908 [G] 73.1
o:10 [VAL] 1:888 [A] 3.86 1:907 [G] 73.1
o:11 [MET] 1:887 [A] 4.67 1:908 [G] 65.6
o:12 [GLY] 1:887 [A] 3.72 1:908 [G] 75.9
o:12 [GLY] 1:909 [A] 4.24 1:886 [G] 75.9
o:12 [GLY] 2:1893 [G] 4.51 2:1890 [U] 75.9
o:13 [ARG] 1:887 [A] 3.94 1:908 [G] 78.8
o:13 [ARG] 1:909 [A] 3.28 1:886 [G] 78.8
o:13 [ARG] 1:910 [G] 3.5 1:885 [U] 78.8
o:13 [ARG] 1:911 [G] 4.88 2:2160 [C] 78.8
o:14 [TYR] 1:910 [G] 4.39 1:885 [U] 62.5
o:14 [TYR] 1:911 [G] 3.06 2:2160 [C] 62.5
o:15 [GLY] 2:1893 [G] 3.35 2:1890 [U] 84.9
o:16 [THR] 2:1893 [G] 3.48 2:1890 [U] 72.7
o:16 [THR] 2:1894 [C] 3.32 2:1889 [G] 72.7
o:16 [THR] 2:2159 [A] 4.33 2:2348 [A] 72.7
o:16 [THR] 2:2348 [A] 3.28 2:2159 [A] 72.7
o:16 [THR] 2:2349 [A] 2.58 sugar:SC 72.7
o:17 [ARG] 1:910 [G] 3.81 1:885 [U] 95.5
o:17 [ARG] 1:911 [G] 3.16 2:2160 [C] 95.5
o:17 [ARG] 1:912 [C] 3.92 1:884 [G] 95.5
o:17 [ARG] 2:2159 [A] 3.74 2:2348 [A] 95.5
o:17 [ARG] 2:2160 [C] 3.69 1:911 [G] 95.5
o:18 [TYR] 1:911 [G] 2.88 2:2160 [C] 93.7
o:18 [TYR] 2:2159 [A] 3.18 2:2348 [A] base:BB 93.7
o:18 [TYR] 2:2160 [C] 3.97 1:911 [G] 93.7
o:18 [TYR] 2:2216 [A] 4.1 2:1891 [U] 93.7
o:19 [GLY] 2:1891 [U] 3.39 2:2216 [A] 98.2
o:19 [GLY] 2:2159 [A] 4.7 2:2348 [A] 98.2
o:19 [GLY] 2:2216 [A] 3.52 2:1891 [U] 98.2
o:19 [GLY] 2:2217 [U] 3.59 2:2346 [U] 98.2
o:20 [ALA] 2:1891 [U] 3.07 2:2216 [A] base:BB 67.6
o:20 [ALA] 2:1892 [C] 4.31 67.6
o:20 [ALA] 2:2217 [U] 3.01 2:2346 [U] 67.6
o:21 [ASN] 2:2217 [U] 3.32 2:2346 [U] sugar:BB 51.8
o:21 [ASN] 2:2218 [U] 2.83 2:2345 [A] 51.8
o:22 [PRO] 2:2216 [A] 4.78 2:1891 [U] 52.4
o:22 [PRO] 2:2217 [U] 3.7 2:2346 [U] 52.4
o:23 [ARG] 2:1891 [U] 2.96 2:2216 [A] 90.7
o:23 [ARG] 2:1892 [C] 3.29 90.7
o:23 [ARG] 2:1893 [G] 4.23 2:1890 [U] 90.7
o:24 [LYS] 2:1892 [C] 4.51 66.2
o:25 [ARG] 2:2178 [G] 4.68 2:2214 [U] 53.5
o:25 [ARG] 2:2218 [U] 4.92 2:2345 [A] 53.5
o:41 [PHE] 2:2754 [A] 4.41 5.7
o:41 [PHE] 2:2755 [C] 4.33 5.7
o:61 [SER] 2:2756 [U] 4.25 42.6
o:62 [LYS] 2:2755 [C] 3.64 10.1
o:62 [LYS] 2:2756 [U] 4.94 10.1
o:80 [ARG] 2:2753 [A] 3.38 15.4
o:87 [ARG] 2:2753 [A] 3.32 10.4
o:91 [LYS] 2:2752 [A] 4.49 53.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group120 6AZ3_o_1,2 o: 60s ribosomal protein l37a, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) E9BFK4 Rubredoxin-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_Z_0 6AZ3_o_1,2 0.88 0.79 1.05 0.26 Rubredoxin-related compare
1JJ2_Y_0 6AZ3_o_1,2 0.89 0.79 1.06 0.27 Rubredoxin-related compare
1S72_Z_0 6AZ3_o_1,2 0.89 0.79 1.09 0.29 Rubredoxin-related compare
1YHQ_Z_0 6AZ3_o_1,2 0.90 0.79 0.96 0.29 Rubredoxin-related compare
3CC2_Z_0 6AZ3_o_1,2 0.90 0.79 1.01 0.29 Rubredoxin-related compare
4V9F_Z_0 6AZ3_o_1,2 0.87 0.8 1.14 0.33 Rubredoxin-related compare
6AZ3_o_1,2 7O7Y_Bp_B5 0.95 0.92 0.76 0.57 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare