RNAprotDB

All interfaces > All interologs > Interface groups > group120 > 6AZ3_o_3

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_o
6AZ3_3
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
o:13 [ARG] 3:194 [A] 4.82 78.81
o:30 [GLU] 3:193 [U] 4.85 60.93
o:30 [GLU] 3:194 [A] 3.2 60.93
o:33 [GLN] 3:194 [A] 4.29 54.17
o:33 [GLN] 3:195 [A] 3.13 54.17
o:34 [HIS] 3:194 [A] 3.74 52.24
o:36 [LYS] 3:122 [U] 3.88 3:116 [C] 34.02
o:41 [PHE] 3:126 [A] 2.71 base:BB 5.71
o:42 [CYS] 3:126 [A] 3.51 88.41
o:44 [LYS] 3:124 [G] 3.03 3:114 [C] 50.35
o:44 [LYS] 3:125 [G] 3.66 50.35
o:44 [LYS] 3:126 [A] 3.55 sugar:SC 50.35
o:49 [ARG] 3:194 [A] 4.61 99.0
o:49 [ARG] 3:195 [A] 2.64 99.0
o:49 [ARG] 3:197 [G] 3.31 99.0
o:50 [LYS] 3:190 [C] 3.77 3.23
o:50 [LYS] 3:191 [A] 3.62 3.23
o:50 [LYS] 3:192 [U] 4.34 3.23
o:50 [LYS] 3:197 [G] 2.41 3.23
o:51 [ALA] 3:197 [G] 3.74 73.29
o:52 [VAL] 3:195 [A] 3.64 64.53
o:52 [VAL] 3:196 [C] 3.68 64.53
o:52 [VAL] 3:197 [G] 4.83 64.53
o:56 [ARG] 3:190 [C] 3.57 base/AA stacks 15.94
o:58 [ASP] 3:123 [C] 4.8 3:115 [G] 41.7
o:59 [GLY] 3:124 [G] 4.54 3:114 [C] 68.21
o:60 [CYS] 3:126 [A] 4.73 90.7
o:63 [THR] 3:190 [C] 4.97 57.82
o:69 [TYR] 3:195 [A] 3.07 base:SC 72.02

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group120 6AZ3_o_3 o: 60s ribosomal protein l37a, Leishmania donovani (natural) 3: rRNA gamma, Leishmania donovani (natural) E9BFK4 Rubredoxin-related ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_o_3 7O7Y_Bp_B5 0.68 0.92 1.02 0.23 Rubredoxin-related compare
4V9F_Z_0 6AZ3_o_3 0.42 0.75 1.62 0.0 Rubredoxin-related compare
1S72_Z_0 6AZ3_o_3 0.35 0.71 1.66 0.0 Rubredoxin-related compare
1JJ2_Y_0 6AZ3_o_3 0.41 0.71 1.86 0.0 Rubredoxin-related compare
1YHQ_Z_0 6AZ3_o_3 0.41 0.71 1.66 0.0 Rubredoxin-related compare
1VQ8_Z_0 6AZ3_o_3 0.35 0.71 1.64 0.0 Rubredoxin-related compare
3CC2_Z_0 6AZ3_o_3 0.40 0.71 1.65 0.0 Rubredoxin-related compare