RNAprotDB

All interfaces > All interologs > Interface groups > group121 > 1VQ8_E_0

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1VQ8_E
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
E:31 [ARG] 0:2793 [A] 4.75 0:2791 [U] 75.17
E:31 [ARG] 0:2794 [G] 3.99 0:2780 [C] sugar:SC 75.17
E:34 [TRP] 0:2793 [A] 3.49 0:2791 [U] sugar:BB 32.96
E:35 [TYR] 0:2793 [A] 3.69 0:2791 [U] 46.36
E:54 [ASP] 0:1140 [C] 4.98 0:1223 [G] 37.77
E:55 [ASN] 0:1139 [U] 4.52 0:1224 [G] 68.04
E:55 [ASN] 0:1140 [C] 3.31 0:1223 [G] 68.04
E:56 [ALA] 0:1139 [U] 3.83 0:1224 [G] 71.54
E:56 [ALA] 0:1140 [C] 2.71 0:1223 [G] 71.54
E:56 [ALA] 0:2784 [A] 3.48 0:2788 [A] sugar:BB 71.54
E:57 [LYS] 0:1117 [A] 4.52 57.01
E:57 [LYS] 0:1118 [A] 4.99 0:1244 [U] 57.01
E:57 [LYS] 0:1138 [G] 3.82 0:1225 [C] 57.01
E:57 [LYS] 0:1139 [U] 4.18 0:1224 [G] 57.01
E:57 [LYS] 0:1140 [C] 4.99 0:1223 [G] 57.01
E:57 [LYS] 0:2792 [A] 4.55 0:2782 [G] 57.01
E:59 [MET] 0:2783 [A] 3.82 0:2789 [U] sugar:BB 49.71
E:59 [MET] 0:2784 [A] 4.33 0:2788 [A] 49.71
E:60 [SER] 0:2783 [A] 2.63 0:2789 [U] sugar:BB 79.59
E:60 [SER] 0:2784 [A] 2.98 0:2788 [A] sugar:SC 79.59
E:60 [SER] 0:2792 [A] 4.04 0:2782 [G] 79.59
E:61 [THR] 0:2783 [A] 4.7 0:2789 [U] 45.01
E:61 [THR] 0:2792 [A] 3.74 0:2782 [G] 45.01
E:61 [THR] 0:2793 [A] 4.38 0:2791 [U] 45.01
E:63 [GLY] 0:2782 [G] 4.72 0:2792 [A] 65.25
E:63 [GLY] 0:2783 [A] 3.57 0:2789 [U] 65.25
E:64 [THR] 0:2782 [G] 2.82 0:2792 [A] sugar:SC 93.82
E:64 [THR] 0:2783 [A] 3.28 0:2789 [U] sugar:SC 93.82
E:64 [THR] 0:2792 [A] 2.83 0:2782 [G] base:SC, base:SC 93.82
E:64 [THR] 0:2793 [A] 3.4 0:2791 [U] 93.82
E:65 [PHE] 0:2793 [A] 4.1 0:2791 [U] 23.96
E:67 [SER] 0:2782 [G] 3.46 0:2792 [A] 78.53
E:67 [SER] 0:2783 [A] 2.43 0:2789 [U] 78.53
E:68 [HIS] 0:2781 [U] 3.25 81.52
E:68 [HIS] 0:2782 [G] 3.77 0:2792 [A] 81.52
E:68 [HIS] 0:2793 [A] 2.93 0:2791 [U] base:SC 81.52
E:71 [ASN] 0:2781 [U] 3.66 97.5
E:71 [ASN] 0:2782 [G] 2.78 0:2792 [A] 97.5
E:82 [TYR] 0:2780 [C] 4.36 0:2794 [G] 75.92
E:82 [TYR] 0:2781 [U] 2.75 75.92
E:89 [SER] 0:2695 [C] 4.62 0:2700 [G] 72.54
E:90 [HIS] 0:2693 [U] 4.68 0:2702 [A] 99.0
E:90 [HIS] 0:2694 [A] 3.44 0:2701 [G] 99.0
E:90 [HIS] 0:2695 [C] 3.76 0:2700 [G] 99.0
E:91 [PHE] 0:2693 [U] 3.88 0:2702 [A] 98.9
E:91 [PHE] 0:2694 [A] 3.18 0:2701 [G] 98.9
E:108 [LEU] 0:2694 [A] 4.99 0:2701 [G] 68.26
E:108 [LEU] 0:2702 [A] 4.93 0:2693 [U] 68.26
E:108 [LEU] 0:2703 [A] 4.05 0:2691 [A] 68.26
E:109 [GLY] 0:2690 [U] 4.69 0:2704 [C] 98.9
E:109 [GLY] 0:2703 [A] 3.51 0:2691 [A] 98.9
E:109 [GLY] 0:2704 [C] 4.92 0:2690 [U] 98.9
E:110 [GLU] 0:2703 [A] 3.56 0:2691 [A] 88.43
E:110 [GLU] 0:2704 [C] 3.12 0:2690 [U] base/AA stacks 88.43
E:111 [LYS] 0:2689 [A] 3.82 0:2705 [U] 81.31
E:111 [LYS] 0:2690 [U] 3.34 0:2704 [C] 81.31
E:111 [LYS] 0:2704 [C] 2.95 0:2690 [U] base:BB, base:BB 81.31
E:111 [LYS] 0:2705 [U] 3.86 0:2689 [A] 81.31
E:112 [ALA] 0:2704 [C] 2.87 0:2690 [U] base:BB 4.05
E:112 [ALA] 0:2705 [U] 3.29 0:2689 [A] 4.05
E:119 [HIS] 0:2796 [U] 3.34 0:2778 [A] 4.33
E:119 [HIS] 0:2797 [C] 4.58 0:2777 [G] 4.33
E:138 [ILE] 0:2780 [C] 4.85 0:2794 [G] 70.96
E:138 [ILE] 0:2781 [U] 3.97 70.96
E:138 [ILE] 0:2782 [G] 4.46 0:2792 [A] 70.96
E:139 [GLU] 0:2780 [C] 4.01 0:2794 [G] 79.04
E:139 [GLU] 0:2781 [U] 2.74 sugar:SC 79.04
E:139 [GLU] 0:2794 [G] 3.16 0:2780 [C] base:SC 79.04
E:139 [GLU] 0:2795 [C] 4.62 0:2779 [G] 79.04
E:142 [GLY] 0:2780 [C] 3.41 0:2794 [G] 85.33
E:142 [GLY] 0:2781 [U] 4.78 85.33
E:143 [GLN] 0:2779 [G] 2.82 0:2795 [C] base:SC 88.3
E:143 [GLN] 0:2780 [C] 2.85 0:2794 [G] sugar:SC 88.3
E:143 [GLN] 0:2795 [C] 4.39 0:2779 [G] 88.3
E:143 [GLN] 0:2796 [U] 3.33 0:2778 [A] base/AA stacks 88.3
E:146 [ALA] 0:2779 [G] 3.72 0:2795 [C] 89.12
E:146 [ALA] 0:2780 [C] 3.53 0:2794 [G] 89.12
E:147 [ASP] 0:2796 [U] 3.39 0:2778 [A] sugar:SC 79.84
E:150 [GLN] 0:2778 [A] 2.64 0:2796 [U] sugar:SC 51.03
E:150 [GLN] 0:2779 [G] 4.02 0:2795 [C] 51.03
E:153 [ARG] 0:2560 [C] 3.41 0:2573 [G] 64.44
E:153 [ARG] 0:2561 [C] 2.68 0:2572 [G] 64.44
E:153 [ARG] 0:2777 [G] 3.88 0:2797 [C] 64.44
E:153 [ARG] 0:2778 [A] 3.27 0:2796 [U] 64.44
E:155 [ASN] 0:2560 [C] 3.23 0:2573 [G] 56.62
E:155 [ASN] 0:2561 [C] 3.33 0:2572 [G] 56.62
E:156 [ASP] 0:2567 [G] 4.43 50.91
E:156 [ASP] 0:2568 [A] 4.73 50.91
E:157 [LYS] 0:2565 [C] 4.59 72.15
E:157 [LYS] 0:2567 [G] 3.32 72.15
E:157 [LYS] 0:2568 [A] 4.29 72.15
E:157 [LYS] 0:2694 [A] 4.48 0:2701 [G] 72.15
E:157 [LYS] 0:2702 [A] 4.09 0:2693 [U] 72.15
E:158 [ASP] 0:2565 [C] 3.62 base/AA stacks 98.41
E:158 [ASP] 0:2566 [A] 3.27 0:2699 [A] 98.41
E:158 [ASP] 0:2567 [G] 2.82 98.41
E:160 [ARG] 0:2564 [G] 4.54 0:2510 [C] 98.74
E:160 [ARG] 0:2565 [C] 3.33 base/AA stacks 98.74
E:160 [ARG] 0:2566 [A] 4.08 0:2699 [A] 98.74
E:161 [VAL] 0:2566 [A] 3.61 0:2699 [A] 66.94
E:161 [VAL] 0:2695 [C] 3.59 0:2700 [G] 66.94
E:161 [VAL] 0:2696 [G] 4.15 66.94
E:162 [PHE] 0:2566 [A] 3.33 0:2699 [A] 93.48
E:162 [PHE] 0:2567 [G] 3.76 93.48
E:162 [PHE] 0:2694 [A] 4.07 0:2701 [G] 93.48
E:162 [PHE] 0:2695 [C] 3.67 0:2700 [G] 93.48
E:171 [LYS] 0:2780 [C] 4.99 0:2794 [G] 83.4

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 1VQ8_E_0 E: 50s ribosomal protein l6p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14135 Ribosomal protein L6 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 6AZ3_E_2 0.85 0.82 2.44 0.5 Ribosomal protein L6 compare
1VQ8_E_0 6AZ3_E_4 0.84 0.86 1.45 0.45 Ribosomal protein L6 compare
1VQ8_E_0 7K00_g_a 0.71 0.9 2.26 0.2 Ribosomal protein L6 compare
1VQ8_E_0 7RYG_G_A 0.63 0.92 3.83 0.17 Ribosomal protein L6 compare
1VQ8_E_0 6S0Z_G_A 0.59 0.93 2.63 0.18 Ribosomal protein L6 compare
1VQ8_E_0 4Y4O_1H_1A 0.72 0.93 1.67 0.15 Ribosomal protein L6 compare
1VQ8_E_0 7O7Y_BH_B5 0.81 0.94 2.38 0.55 Ribosomal protein L6 compare
1VQ8_E_0 1YHQ_E_0 1.00 1.0 0.22 1.0 Ribosomal protein L6 Archaeal large subunit ribosomal RNA compare