RNAprotDB

All interfaces > All interologs > Interface groups > group121 > 1VQ8_E_0 vs 4Y4O_1H_1A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1VQ8_E
1VQ8_0
4Y4O_1H
4Y4O_1A
Conserved?
E:161 [VAL] 0:2566 [A] 1H:158 [HIS] 1A:2543 [A] ✔
E:161 [VAL] 0:2695 [C] 1H:158 [HIS] 1A:2670 [C] ✔
E:161 [VAL] 0:2696 [G] 1H:158 [HIS] 1A:2671 [G] ✔
E:64 [THR] 0:2782 [G] 1H:67 [LEU] 1A:2760 [G] ✔
E:64 [THR] 0:2783 [A] 1H:67 [LEU] 1A:2761 [A] ✔
E:64 [THR] 0:2792 [A] 1H:67 [LEU] 1A:2770 [A] ✔
E:64 [THR] 0:2793 [A] 1H:67 [LEU] 1A:2771 [A] ✔
E:111 [LYS] 0:2690 [U] 1H:110 [SER] 1A:2665 [U] ✔
E:111 [LYS] 0:2704 [C] 1H:110 [SER] 1A:2679 [C] ✔
E:111 [LYS] 0:2705 [U] 1H:110 [SER] 1A:2680 [G] ✔
E:56 [ALA] 0:1139 [U] 1H:59 [ARG] 1A:1081 [U] ✔
E:56 [ALA] 0:1140 [C] 1H:59 [ARG] 1A:1082 [G] ✔
E:56 [ALA] 0:2784 [A] 1H:59 [ARG] 1A:2762 [A] ✔
E:112 [ALA] 0:2704 [C] 1H:111 [HIS] 1A:2679 [C] ✔
E:112 [ALA] 0:2705 [U] 1H:111 [HIS] 1A:2680 [G] ✔
E:160 [ARG] 0:2564 [G] 1H:157 [TYR] 1A:2541 [G] ✔
E:160 [ARG] 0:2565 [C] 1H:157 [TYR] 1A:2542 [A] ✔
E:160 [ARG] 0:2566 [A] 1H:157 [TYR] 1A:2543 [A] ✔
E:146 [ALA] 0:2779 [G] 1H:146 [ALA] 1A:2757 [G] ✔
E:146 [ALA] 0:2780 [C] 1H:146 [ALA] 1A:2758 [C] ✔
E:60 [SER] 0:2783 [A] 1H:63 [SER] 1A:2761 [A] ✔
E:60 [SER] 0:2784 [A] 1H:63 [SER] 1A:2762 [A] ✔
E:60 [SER] 0:2792 [A] 1H:63 [SER] 1A:2770 [A] ✔
E:143 [GLN] 0:2779 [G] 1H:143 [GLN] 1A:2757 [G] ✔
E:143 [GLN] 0:2780 [C] 1H:143 [GLN] 1A:2758 [C] ✔
E:143 [GLN] 0:2795 [C] 1H:143 [GLN] 1A:2773 [C] ✔
E:143 [GLN] 0:2796 [U] 1H:143 [GLN] 1A:2774 [G] ✔
E:142 [GLY] 0:2780 [C] 1H:142 [GLY] 1A:2758 [C] ✔
E:142 [GLY] 0:2781 [U] 1H:142 [GLY] 1A:2759 [U] ✔
E:108 [LEU] 0:2702 [A] 1H:108 [GLY] 1A:2677 [A] ✔
E:108 [LEU] 0:2703 [A] 1H:108 [GLY] 1A:2678 [C] ✔
E:59 [MET] 0:2783 [A] 1H:62 [LYS] 1A:2761 [A] ✔
E:59 [MET] 0:2784 [A] 1H:62 [LYS] 1A:2762 [A] ✔
E:147 [ASP] 0:2796 [U] 1H:147 [ASN] 1A:2774 [G] ✔
E:153 [ARG] 0:2778 [A] 1H:153 [LYS] 1A:2756 [C] ✔
E:71 [ASN] 0:2781 [U] 1H:74 [ASN] 1A:2759 [U] ✔
E:71 [ASN] 0:2782 [G] 1H:74 [ASN] 1A:2760 [G] ✔
E:139 [GLU] 0:2780 [C] 1H:139 [GLN] 1A:2758 [C] ✔
E:139 [GLU] 0:2781 [U] 1H:139 [GLN] 1A:2759 [U] ✔
E:139 [GLU] 0:2794 [G] 1H:139 [GLN] 1A:2772 [G] ✔
E:139 [GLU] 0:2795 [C] 1H:139 [GLN] 1A:2773 [C] ✔
E:82 [TYR] 0:2780 [C] 1H:85 [LYS] 1A:2758 [C] ✔
E:82 [TYR] 0:2781 [U] 1H:85 [LYS] 1A:2759 [U] ✔
E:138 [ILE] 0:2781 [U] 1H:138 [LYS] 1A:2759 [U] ✔
E:138 [ILE] 0:2782 [G] 1H:138 [LYS] 1A:2760 [G] ✔
E:67 [SER] 0:2782 [G] 1H:70 [THR] 1A:2760 [G] ✔
E:67 [SER] 0:2783 [A] 1H:70 [THR] 1A:2761 [A] ✔
E:63 [GLY] 0:2782 [G] 1H:66 [GLY] 1A:2760 [G] ✔
E:63 [GLY] 0:2783 [A] 1H:66 [GLY] 1A:2761 [A] ✔
E:68 [HIS] 0:2781 [U] 1H:71 [LEU] 1A:2759 [U] ✔
E:68 [HIS] 0:2782 [G] 1H:71 [LEU] 1A:2760 [G] ✔
E:68 [HIS] 0:2793 [A] 1H:71 [LEU] 1A:2771 [A] ✔
E:61 [THR] 0:2783 [A] 1H:64 [LEU] 1A:2761 [A] ✔
E:61 [THR] 0:2792 [A] 1H:64 [LEU] 1A:2770 [A] ✔
E:61 [THR] 0:2793 [A] 1H:64 [LEU] 1A:2771 [A] ✔
E:110 [GLU] 0:2703 [A] 1H:109 [PHE] 1A:2678 [C] ✔
E:110 [GLU] 0:2704 [C] 1H:109 [PHE] 1A:2679 [C] ✔
E:108 [LEU] 0:2694 [A] 1H:108 [GLY] 1A:2669 [A] ❌ 4Y4O_1H_1A
E:138 [ILE] 0:2780 [C] 1H:138 [LYS] 1A:2758 [C] ❌ 4Y4O_1H_1A
E:111 [LYS] 0:2703 [A] 1H:110 [SER] 1A:2678 [C] ❌ 1VQ8_E_0
E:160 [ARG] 0:2567 [G] 1H:157 [TYR] 1A:2544 [G] ❌ 1VQ8_E_0
E:56 [ALA] 0:1138 [G] 1H:59 [ARG] 1A:1080 [G] ❌ 1VQ8_E_0
E:111 [LYS] 0:2689 [A] 1H:110 [SER] 1A:2664 [C] ❌ 4Y4O_1A:2664 no longer at interface
E:91 [PHE] 0:2693 [U] 1H:93 [GLY] 1A:2668 [U] ❌ 4Y4O_1H:93, 4Y4O_1A:2668 no longer at interface
E:57 [LYS] 0:1117 [A] 1H:60 [ARG] 1A:1066 [A] ❌ 4Y4O_1H:60, 4Y4O_1A:1066 no longer at interface
E:57 [LYS] 0:1118 [A] 1H:60 [ARG] 1A:1067 [A] ❌ 4Y4O_1H:60, 4Y4O_1A:1067 no longer at interface
E:153 [ARG] 0:2560 [C] 1H:153 [LYS] 1A:2537 [G] ❌ 4Y4O_1A:2537 no longer at interface
E:153 [ARG] 0:2561 [C] 1H:153 [LYS] 1A:2538 [G] ❌ 4Y4O_1A:2538 no longer at interface
E:153 [ARG] 0:2777 [G] 1H:153 [LYS] 1A:2755 [C] ❌ 4Y4O_1A:2755 no longer at interface
E:119 [HIS] 0:2797 [C] 1H:118 [PRO] 1A:2775 [G] ❌ 4Y4O_1H:118, 4Y4O_1A:2775 no longer at interface
E:111 [LYS] 0:2691 [A] 1H:110 [SER] 1A:2666 [A] ❌ 1VQ8_0:2691 no longer at interface
E:3 [VAL] 0:1216 [G] 1H:6 [ARG] 1A:1158 [G] ❌ 1VQ8_E:3, 1VQ8_0:1216 no longer at interface
E:59 [MET] 0:2785 [C] 1H:62 [LYS] 1A:2763 [A] ❌ 1VQ8_0:2785 no longer at interface
E:91 [PHE] 0:2694 [A] 1H:93 [GLY] 1A:2669 [A] ❌ 4Y4O_1H:93 no longer at interface
E:65 [PHE] 0:2793 [A] 1H:68 [THR] 1A:2771 [A] ❌ 4Y4O_1H:68 no longer at interface
E:57 [LYS] 0:1138 [G] 1H:60 [ARG] 1A:1080 [G] ❌ 4Y4O_1H:60 no longer at interface
E:57 [LYS] 0:1139 [U] 1H:60 [ARG] 1A:1081 [U] ❌ 4Y4O_1H:60 no longer at interface
E:57 [LYS] 0:1140 [C] 1H:60 [ARG] 1A:1082 [G] ❌ 4Y4O_1H:60 no longer at interface
E:57 [LYS] 0:2792 [A] 1H:60 [ARG] 1A:2770 [A] ❌ 4Y4O_1H:60 no longer at interface
E:158 [ASP] 0:2565 [C] 1H:155 [SER] 1A:2542 [A] ❌ 4Y4O_1H:155 no longer at interface
E:158 [ASP] 0:2566 [A] 1H:155 [SER] 1A:2543 [A] ❌ 4Y4O_1H:155 no longer at interface
E:158 [ASP] 0:2567 [G] 1H:155 [SER] 1A:2544 [G] ❌ 4Y4O_1H:155 no longer at interface
E:34 [TRP] 0:2793 [A] 1H:38 [SER] 1A:2771 [A] ❌ 4Y4O_1H:38 no longer at interface
E:171 [LYS] 0:2780 [C] 1H:167 [GLU] 1A:2758 [C] ❌ 4Y4O_1H:167 no longer at interface
E:89 [SER] 0:2695 [C] 1H:92 [ILE] 1A:2670 [C] ❌ 4Y4O_1H:92 no longer at interface
E:150 [GLN] 0:2778 [A] 1H:150 [ALA] 1A:2756 [C] ❌ 4Y4O_1H:150 no longer at interface
E:150 [GLN] 0:2779 [G] 1H:150 [ALA] 1A:2757 [G] ❌ 4Y4O_1H:150 no longer at interface
E:119 [HIS] 0:2796 [U] 1H:118 [PRO] 1A:2774 [G] ❌ 4Y4O_1H:118 no longer at interface
E:31 [ARG] 0:2793 [A] 1H:35 [VAL] 1A:2771 [A] ❌ 4Y4O_1H:35 no longer at interface
E:31 [ARG] 0:2794 [G] 1H:35 [VAL] 1A:2772 [G] ❌ 4Y4O_1H:35 no longer at interface
E:54 [ASP] 0:1140 [C] 1H:57 [ASP] 1A:1082 [G] ❌ 4Y4O_1H:57 no longer at interface
E:55 [ASN] 0:1139 [U] 1H:58 [GLU] 1A:1081 [U] ❌ 4Y4O_1H:58 no longer at interface
E:55 [ASN] 0:1140 [C] 1H:58 [GLU] 1A:1082 [G] ❌ 4Y4O_1H:58 no longer at interface
E:140 [ALA] 0:2780 [C] 1H:140 [LYS] 1A:2758 [C] ❌ 1VQ8_E:140 no longer at interface
E:152 [THR] 0:2703 [A] 1H:152 [ARG] 1A:2678 [C] ❌ 1VQ8_E:152 no longer at interface
E:159 [VAL] 0:2565 [C] 1H:156 [ALA] 1A:2542 [A] ❌ 1VQ8_E:159 no longer at interface
E:164 [ASP] 0:2695 [C] 1H:160 [LYS] 1A:2670 [C] ❌ 1VQ8_E:164 no longer at interface
E:164 [ASP] 0:2694 [A] 1H:160 [LYS] 1A:2669 [A] ❌ 1VQ8_E:164 no longer at interface
E:168 [ILE] 0:2780 [C] 1H:164 [TYR] 1A:2758 [C] ❌ 1VQ8_E:168 no longer at interface
E:2 [ARG] 0:2784 [A] 1H:5 [GLY] 1A:2762 [A] ❌ 1VQ8_E:2 no longer at interface
E:62 [ILE] 0:2783 [A] 1H:65 [HIS] 1A:2761 [A] ❌ 1VQ8_E:62 no longer at interface
E:92 [PRO] 0:2694 [A] 1H:94 [TYR] 1A:2669 [A] ❌ 1VQ8_E:92 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L6 0.93 1.67 0.15 0.76 0.93 0.59 0.75 0.72 0.65 0.33 0.89


Other pairs involving 1VQ8_E_0 or 4Y4O_1H_1A

Total number of entries: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 6S0Z_G_A 0.59 0.93 2.63 0.18 Ribosomal protein L6 compare
1VQ8_E_0 6AZ3_E_2 0.85 0.82 2.44 0.5 Ribosomal protein L6 compare
1VQ8_E_0 7K00_g_a 0.71 0.9 2.26 0.2 Ribosomal protein L6 compare
1VQ8_E_0 6AZ3_E_4 0.84 0.86 1.45 0.45 Ribosomal protein L6 compare
1VQ8_E_0 1YHQ_E_0 1.00 1.0 0.22 1.0 Ribosomal protein L6 Archaeal large subunit ribosomal RNA compare
1VQ8_E_0 7O7Y_BH_B5 0.81 0.94 2.38 0.55 Ribosomal protein L6 compare
1VQ8_E_0 4Y4O_1H_1A 0.72 0.93 1.67 0.15 Ribosomal protein L6 compare
1VQ8_E_0 7RYG_G_A 0.63 0.92 3.83 0.17 Ribosomal protein L6 compare
4Y4O_1H_1A 7RYG_G_A 0.75 0.96 2.99 0.49 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 7O7Y_BH_B5 0.58 0.89 2.14 0.1 Ribosomal protein L6 compare
4Y4O_1H_1A 6AZ3_E_4 0.72 0.82 1.87 0.06 Ribosomal protein L6 compare
4Y4O_1H_1A 7K00_g_a 0.82 0.97 1.64 0.54 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 6S0Z_G_A 0.77 0.97 1.91 0.53 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
1YHQ_E_0 4Y4O_1H_1A 0.71 0.93 1.96 0.15 Ribosomal protein L6 compare