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All interfaces > All interologs > Interface groups > group121 > 1VQ8_E_0 vs 7K00_g_a

Interface analysis


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Common contacts -

1VQ8_E
1VQ8_0
7K00_g
7K00_a
Conserved?
E:161 [VAL] 0:2695 [C] g:158 [LYS] a:2658 [C] ✔
E:161 [VAL] 0:2696 [G] g:158 [LYS] a:2659 [G] ✔
E:64 [THR] 0:2782 [G] g:67 [THR] a:2747 [G] ✔
E:64 [THR] 0:2783 [A] g:67 [THR] a:2748 [A] ✔
E:64 [THR] 0:2792 [A] g:67 [THR] a:2757 [A] ✔
E:64 [THR] 0:2793 [A] g:67 [THR] a:2758 [A] ✔
E:111 [LYS] 0:2690 [U] g:110 [SER] a:2653 [U] ✔
E:111 [LYS] 0:2704 [C] g:110 [SER] a:2667 [C] ✔
E:111 [LYS] 0:2705 [U] g:110 [SER] a:2668 [G] ✔
E:112 [ALA] 0:2704 [C] g:111 [HIS] a:2667 [C] ✔
E:112 [ALA] 0:2705 [U] g:111 [HIS] a:2668 [G] ✔
E:160 [ARG] 0:2564 [G] g:157 [TYR] a:2529 [G] ✔
E:160 [ARG] 0:2565 [C] g:157 [TYR] a:2530 [A] ✔
E:160 [ARG] 0:2566 [A] g:157 [TYR] a:2531 [A] ✔
E:146 [ALA] 0:2779 [G] g:146 [ALA] a:2744 [G] ✔
E:146 [ALA] 0:2780 [C] g:146 [ALA] a:2745 [C] ✔
E:60 [SER] 0:2783 [A] g:63 [ALA] a:2748 [A] ✔
E:60 [SER] 0:2784 [A] g:63 [ALA] a:2749 [A] ✔
E:60 [SER] 0:2792 [A] g:63 [ALA] a:2757 [A] ✔
E:143 [GLN] 0:2779 [G] g:143 [GLN] a:2744 [G] ✔
E:143 [GLN] 0:2780 [C] g:143 [GLN] a:2745 [C] ✔
E:143 [GLN] 0:2795 [C] g:143 [GLN] a:2760 [C] ✔
E:143 [GLN] 0:2796 [U] g:143 [GLN] a:2761 [A] ✔
E:142 [GLY] 0:2780 [C] g:142 [GLY] a:2745 [C] ✔
E:142 [GLY] 0:2781 [U] g:142 [GLY] a:2746 [U] ✔
E:108 [LEU] 0:2702 [A] g:108 [GLY] a:2665 [A] ✔
E:108 [LEU] 0:2703 [A] g:108 [GLY] a:2666 [C] ✔
E:59 [MET] 0:2783 [A] g:62 [TRP] a:2748 [A] ✔
E:59 [MET] 0:2784 [A] g:62 [TRP] a:2749 [A] ✔
E:147 [ASP] 0:2796 [U] g:147 [ASP] a:2761 [A] ✔
E:153 [ARG] 0:2561 [C] g:153 [ARG] a:2526 [G] ✔
E:153 [ARG] 0:2778 [A] g:153 [ARG] a:2743 [U] ✔
E:34 [TRP] 0:2793 [A] g:38 [ASN] a:2758 [A] ✔
E:89 [SER] 0:2695 [C] g:92 [VAL] a:2658 [C] ✔
E:71 [ASN] 0:2782 [G] g:74 [SER] a:2747 [G] ✔
E:139 [GLU] 0:2780 [C] g:139 [GLN] a:2745 [C] ✔
E:139 [GLU] 0:2781 [U] g:139 [GLN] a:2746 [U] ✔
E:139 [GLU] 0:2794 [G] g:139 [GLN] a:2759 [G] ✔
E:139 [GLU] 0:2795 [C] g:139 [GLN] a:2760 [C] ✔
E:82 [TYR] 0:2781 [U] g:85 [LYS] a:2746 [U] ✔
E:138 [ILE] 0:2780 [C] g:138 [LYS] a:2745 [C] ✔
E:138 [ILE] 0:2781 [U] g:138 [LYS] a:2746 [U] ✔
E:138 [ILE] 0:2782 [G] g:138 [LYS] a:2747 [G] ✔
E:67 [SER] 0:2782 [G] g:70 [ALA] a:2747 [G] ✔
E:67 [SER] 0:2783 [A] g:70 [ALA] a:2748 [A] ✔
E:63 [GLY] 0:2782 [G] g:66 [GLY] a:2747 [G] ✔
E:63 [GLY] 0:2783 [A] g:66 [GLY] a:2748 [A] ✔
E:68 [HIS] 0:2781 [U] g:71 [LEU] a:2746 [U] ✔
E:68 [HIS] 0:2782 [G] g:71 [LEU] a:2747 [G] ✔
E:68 [HIS] 0:2793 [A] g:71 [LEU] a:2758 [A] ✔
E:61 [THR] 0:2783 [A] g:64 [GLN] a:2748 [A] ✔
E:61 [THR] 0:2792 [A] g:64 [GLN] a:2757 [A] ✔
E:61 [THR] 0:2793 [A] g:64 [GLN] a:2758 [A] ✔
E:110 [GLU] 0:2703 [A] g:109 [PHE] a:2666 [C] ✔
E:110 [GLU] 0:2704 [C] g:109 [PHE] a:2667 [C] ✔
E:31 [ARG] 0:2793 [A] g:35 [ARG] a:2758 [A] ✔
E:31 [ARG] 0:2794 [G] g:35 [ARG] a:2759 [G] ✔
E:161 [VAL] 0:2566 [A] g:158 [LYS] a:2531 [A] ❌ 7K00_g_a
E:108 [LEU] 0:2694 [A] g:108 [GLY] a:2657 [A] ❌ 7K00_g_a
E:158 [ASP] 0:2565 [C] g:155 [GLU] a:2530 [A] ❌ 7K00_g_a
E:158 [ASP] 0:2566 [A] g:155 [GLU] a:2531 [A] ❌ 7K00_g_a
E:158 [ASP] 0:2567 [G] g:155 [GLU] a:2532 [G] ❌ 7K00_g_a
E:71 [ASN] 0:2781 [U] g:74 [SER] a:2746 [U] ❌ 7K00_g_a
E:82 [TYR] 0:2780 [C] g:85 [LYS] a:2745 [C] ❌ 7K00_g_a
E:111 [LYS] 0:2703 [A] g:110 [SER] a:2666 [C] ❌ 1VQ8_E_0
E:139 [GLU] 0:2779 [G] g:139 [GLN] a:2744 [G] ❌ 1VQ8_E_0
E:158 [ASP] 0:2695 [C] g:155 [GLU] a:2658 [C] ❌ 1VQ8_E_0
E:160 [ARG] 0:2567 [G] g:157 [TYR] a:2532 [G] ❌ 1VQ8_E_0
E:111 [LYS] 0:2689 [A] g:110 [SER] a:2652 [C] ❌ 7K00_a:2652 no longer at interface
E:153 [ARG] 0:2560 [C] g:153 [ARG] a:2525 [G] ❌ 7K00_a:2525 no longer at interface
E:153 [ARG] 0:2777 [G] g:153 [ARG] a:2742 [G] ❌ 7K00_a:2742 no longer at interface
E:119 [HIS] 0:2797 [C] g:118 [PRO] a:2762 [C] ❌ 7K00_g:118, 7K00_a:2762 no longer at interface
E:54 [ASP] 0:1140 [C] g:59 [ALA] a:1036 [G] ❌ 7K00_g:59, 7K00_a:1036 no longer at interface
E:55 [ASN] 0:1139 [U] g:60 [ASP] a:1035 [U] ❌ 7K00_g:60, 7K00_a:1035 no longer at interface
E:55 [ASN] 0:1140 [C] g:60 [ASP] a:1036 [G] ❌ 7K00_g:60, 7K00_a:1036 no longer at interface
E:1 [PRO] 0:2786 [G] g:2 [SER] a:2751 [G] ❌ 1VQ8_E:1, 1VQ8_0:2786 no longer at interface
E:1 [PRO] 0:2785 [C] g:2 [SER] a:2750 [A] ❌ 1VQ8_E:1, 1VQ8_0:2785 no longer at interface
E:65 [PHE] 0:2793 [A] g:68 [ALA] a:2758 [A] ❌ 7K00_g:68 no longer at interface
E:171 [LYS] 0:2780 [C] g:167 [GLU] a:2745 [C] ❌ 7K00_g:167 no longer at interface
E:150 [GLN] 0:2778 [A] g:150 [ALA] a:2743 [U] ❌ 7K00_g:150 no longer at interface
E:150 [GLN] 0:2779 [G] g:150 [ALA] a:2744 [G] ❌ 7K00_g:150 no longer at interface
E:119 [HIS] 0:2796 [U] g:118 [PRO] a:2761 [A] ❌ 7K00_g:118 no longer at interface
E:149 [GLU] 0:2779 [G] g:149 [ARG] a:2744 [G] ❌ 1VQ8_E:149 no longer at interface
E:152 [THR] 0:2703 [A] g:152 [ARG] a:2666 [C] ❌ 1VQ8_E:152 no longer at interface
E:159 [VAL] 0:2565 [C] g:156 [PRO] a:2530 [A] ❌ 1VQ8_E:159 no longer at interface
E:164 [ASP] 0:2694 [A] g:160 [LYS] a:2657 [A] ❌ 1VQ8_E:164 no longer at interface
E:164 [ASP] 0:2695 [C] g:160 [LYS] a:2658 [C] ❌ 1VQ8_E:164 no longer at interface
E:168 [ILE] 0:2779 [G] g:164 [TYR] a:2744 [G] ❌ 1VQ8_E:168 no longer at interface
E:168 [ILE] 0:2780 [C] g:164 [TYR] a:2745 [C] ❌ 1VQ8_E:168 no longer at interface
E:1 [PRO] 0:2784 [A] g:2 [SER] a:2749 [A] ❌ 1VQ8_E:1 no longer at interface
E:1 [PRO] 0:2783 [A] g:2 [SER] a:2748 [A] ❌ 1VQ8_E:1 no longer at interface
E:2 [ARG] 0:2784 [A] g:5 [ALA] a:2749 [A] ❌ 1VQ8_E:2 no longer at interface
E:93 [MET] 0:2694 [A] g:94 [TYR] a:2657 [A] ❌ 1VQ8_E:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L6 0.9 2.26 0.20 0.78 0.9 0.65 0.76 0.71 0.63 0.26 0.69


Other pairs involving 1VQ8_E_0 or 7K00_g_a

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 6S0Z_G_A 0.59 0.93 2.63 0.18 Ribosomal protein L6 compare
1VQ8_E_0 6AZ3_E_2 0.85 0.82 2.44 0.5 Ribosomal protein L6 compare
1VQ8_E_0 7K00_g_a 0.71 0.9 2.26 0.2 Ribosomal protein L6 compare
1VQ8_E_0 6AZ3_E_4 0.84 0.86 1.45 0.45 Ribosomal protein L6 compare
1VQ8_E_0 1YHQ_E_0 1.00 1.0 0.22 1.0 Ribosomal protein L6 Archaeal large subunit ribosomal RNA compare
1VQ8_E_0 7O7Y_BH_B5 0.81 0.94 2.38 0.55 Ribosomal protein L6 compare
1VQ8_E_0 4Y4O_1H_1A 0.72 0.93 1.67 0.15 Ribosomal protein L6 compare
1VQ8_E_0 7RYG_G_A 0.63 0.92 3.83 0.17 Ribosomal protein L6 compare
7K00_g_a 7O7Y_BH_B5 0.58 0.9 2.4 0.1 Ribosomal protein L6 compare
7K00_g_a 7RYG_G_A 0.88 0.99 2.43 0.71 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6AZ3_E_4 7K00_g_a 0.73 0.82 1.97 0.15 Ribosomal protein L6 compare
4Y4O_1H_1A 7K00_g_a 0.82 0.97 1.64 0.54 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6S0Z_G_A 7K00_g_a 0.83 0.97 1.49 0.65 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6AZ3_E_2 7K00_g_a 0.41 0.83 2.88 0.0 Ribosomal protein L6 compare
1YHQ_E_0 7K00_g_a 0.71 0.91 2.33 0.2 Ribosomal protein L6 compare