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All interfaces > All interologs > Interface groups > group121 > 1VQ8_E_0 vs 7RYG_G_A

Interface analysis


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Common contacts -

1VQ8_E
1VQ8_0
7RYG_G
7RYG_A
Conserved?
E:161 [VAL] 0:2566 [A] G:157 [TYR] A:2527 [A] ✔
E:64 [THR] 0:2782 [G] G:67 [THR] A:2743 [G] ✔
E:64 [THR] 0:2783 [A] G:67 [THR] A:2744 [A] ✔
E:64 [THR] 0:2792 [A] G:67 [THR] A:2753 [A] ✔
E:111 [LYS] 0:2690 [U] G:110 [SER] A:2649 [U] ✔
E:111 [LYS] 0:2704 [C] G:110 [SER] A:2663 [C] ✔
E:111 [LYS] 0:2705 [U] G:110 [SER] A:2664 [A] ✔
E:112 [ALA] 0:2704 [C] G:111 [HIS] A:2663 [C] ✔
E:112 [ALA] 0:2705 [U] G:111 [HIS] A:2664 [A] ✔
E:160 [ARG] 0:2565 [C] G:156 [PRO] A:2526 [A] ✔
E:146 [ALA] 0:2779 [G] G:146 [ALA] A:2740 [G] ✔
E:146 [ALA] 0:2780 [C] G:146 [ALA] A:2741 [C] ✔
E:60 [SER] 0:2783 [A] G:63 [MET] A:2744 [A] ✔
E:60 [SER] 0:2784 [A] G:63 [MET] A:2745 [A] ✔
E:60 [SER] 0:2792 [A] G:63 [MET] A:2753 [A] ✔
E:143 [GLN] 0:2779 [G] G:143 [GLN] A:2740 [G] ✔
E:143 [GLN] 0:2780 [C] G:143 [GLN] A:2741 [C] ✔
E:143 [GLN] 0:2796 [U] G:143 [GLN] A:2757 [G] ✔
E:142 [GLY] 0:2780 [C] G:142 [GLY] A:2741 [C] ✔
E:142 [GLY] 0:2781 [U] G:142 [GLY] A:2742 [U] ✔
E:108 [LEU] 0:2702 [A] G:108 [GLY] A:2661 [A] ✔
E:108 [LEU] 0:2703 [A] G:108 [GLY] A:2662 [C] ✔
E:59 [MET] 0:2783 [A] G:62 [TRP] A:2744 [A] ✔
E:147 [ASP] 0:2796 [U] G:147 [GLU] A:2757 [G] ✔
E:162 [PHE] 0:2695 [C] G:158 [LYS] A:2654 [C] ✔
E:34 [TRP] 0:2793 [A] G:38 [HIS] A:2754 [A] ✔
E:89 [SER] 0:2695 [C] G:92 [VAL] A:2654 [C] ✔
E:71 [ASN] 0:2781 [U] G:74 [ASN] A:2742 [U] ✔
E:71 [ASN] 0:2782 [G] G:74 [ASN] A:2743 [G] ✔
E:139 [GLU] 0:2780 [C] G:139 [GLN] A:2741 [C] ✔
E:139 [GLU] 0:2781 [U] G:139 [GLN] A:2742 [U] ✔
E:139 [GLU] 0:2794 [G] G:139 [GLN] A:2755 [G] ✔
E:139 [GLU] 0:2795 [C] G:139 [GLN] A:2756 [C] ✔
E:82 [TYR] 0:2781 [U] G:85 [ARG] A:2742 [U] ✔
E:138 [ILE] 0:2780 [C] G:138 [LYS] A:2741 [C] ✔
E:138 [ILE] 0:2781 [U] G:138 [LYS] A:2742 [U] ✔
E:138 [ILE] 0:2782 [G] G:138 [LYS] A:2743 [G] ✔
E:67 [SER] 0:2782 [G] G:70 [ALA] A:2743 [G] ✔
E:67 [SER] 0:2783 [A] G:70 [ALA] A:2744 [A] ✔
E:63 [GLY] 0:2783 [A] G:66 [GLY] A:2744 [A] ✔
E:68 [HIS] 0:2782 [G] G:71 [VAL] A:2743 [G] ✔
E:68 [HIS] 0:2793 [A] G:71 [VAL] A:2754 [A] ✔
E:61 [THR] 0:2792 [A] G:64 [GLN] A:2753 [A] ✔
E:61 [THR] 0:2793 [A] G:64 [GLN] A:2754 [A] ✔
E:110 [GLU] 0:2703 [A] G:109 [TYR] A:2662 [C] ✔
E:110 [GLU] 0:2704 [C] G:109 [TYR] A:2663 [C] ✔
E:31 [ARG] 0:2793 [A] G:35 [PHE] A:2754 [A] ✔
E:55 [ASN] 0:1139 [U] G:59 [LYS] A:1032 [U] ✔
E:161 [VAL] 0:2695 [C] G:157 [TYR] A:2654 [C] ❌ 7RYG_G_A
E:161 [VAL] 0:2696 [G] G:157 [TYR] A:2655 [G] ❌ 7RYG_G_A
E:64 [THR] 0:2793 [A] G:67 [THR] A:2754 [A] ❌ 7RYG_G_A
E:160 [ARG] 0:2564 [G] G:156 [PRO] A:2525 [G] ❌ 7RYG_G_A
E:160 [ARG] 0:2566 [A] G:156 [PRO] A:2527 [A] ❌ 7RYG_G_A
E:143 [GLN] 0:2795 [C] G:143 [GLN] A:2756 [C] ❌ 7RYG_G_A
E:108 [LEU] 0:2694 [A] G:108 [GLY] A:2653 [A] ❌ 7RYG_G_A
E:59 [MET] 0:2784 [A] G:62 [TRP] A:2745 [A] ❌ 7RYG_G_A
E:162 [PHE] 0:2566 [A] G:158 [LYS] A:2527 [A] ❌ 7RYG_G_A
E:162 [PHE] 0:2567 [G] G:158 [LYS] A:2528 [G] ❌ 7RYG_G_A
E:162 [PHE] 0:2694 [A] G:158 [LYS] A:2653 [A] ❌ 7RYG_G_A
E:82 [TYR] 0:2780 [C] G:85 [ARG] A:2741 [C] ❌ 7RYG_G_A
E:63 [GLY] 0:2782 [G] G:66 [GLY] A:2743 [G] ❌ 7RYG_G_A
E:68 [HIS] 0:2781 [U] G:71 [VAL] A:2742 [U] ❌ 7RYG_G_A
E:61 [THR] 0:2783 [A] G:64 [GLN] A:2744 [A] ❌ 7RYG_G_A
E:31 [ARG] 0:2794 [G] G:35 [PHE] A:2755 [G] ❌ 7RYG_G_A
E:111 [LYS] 0:2703 [A] G:110 [SER] A:2662 [C] ❌ 1VQ8_E_0
E:139 [GLU] 0:2779 [G] G:139 [GLN] A:2740 [G] ❌ 1VQ8_E_0
E:161 [VAL] 0:2567 [G] G:157 [TYR] A:2528 [G] ❌ 1VQ8_E_0
E:161 [VAL] 0:2565 [C] G:157 [TYR] A:2526 [A] ❌ 1VQ8_E_0
E:162 [PHE] 0:2696 [G] G:158 [LYS] A:2655 [G] ❌ 1VQ8_E_0
E:89 [SER] 0:2694 [A] G:92 [VAL] A:2653 [A] ❌ 1VQ8_E_0
E:111 [LYS] 0:2689 [A] G:110 [SER] A:2648 [C] ❌ 7RYG_A:2648 no longer at interface
E:57 [LYS] 0:1117 [A] G:60 [ASP] A:1017 [A] ❌ 7RYG_G:60, 7RYG_A:1017 no longer at interface
E:57 [LYS] 0:1118 [A] G:60 [ASP] A:1018 [A] ❌ 7RYG_G:60, 7RYG_A:1018 no longer at interface
E:57 [LYS] 0:1138 [G] G:60 [ASP] A:1031 [G] ❌ 7RYG_G:60, 7RYG_A:1031 no longer at interface
E:57 [LYS] 0:1140 [C] G:60 [ASP] A:1033 [G] ❌ 7RYG_G:60, 7RYG_A:1033 no longer at interface
E:153 [ARG] 0:2560 [C] G:153 [SER] A:2521 [G] ❌ 7RYG_G:153, 7RYG_A:2521 no longer at interface
E:153 [ARG] 0:2561 [C] G:153 [SER] A:2522 [G] ❌ 7RYG_G:153, 7RYG_A:2522 no longer at interface
E:153 [ARG] 0:2777 [G] G:153 [SER] A:2738 [C] ❌ 7RYG_G:153, 7RYG_A:2738 no longer at interface
E:153 [ARG] 0:2778 [A] G:153 [SER] A:2739 [C] ❌ 7RYG_G:153, 7RYG_A:2739 no longer at interface
E:150 [GLN] 0:2778 [A] G:150 [ALA] A:2739 [C] ❌ 7RYG_G:150, 7RYG_A:2739 no longer at interface
E:119 [HIS] 0:2797 [C] G:118 [PRO] A:2758 [G] ❌ 7RYG_G:118, 7RYG_A:2758 no longer at interface
E:54 [ASP] 0:1140 [C] G:58 [SER] A:1033 [G] ❌ 7RYG_G:58, 7RYG_A:1033 no longer at interface
E:55 [ASN] 0:1140 [C] G:59 [LYS] A:1033 [G] ❌ 7RYG_A:1033 no longer at interface
E:1 [PRO] 0:2785 [C] G:2 [SER] A:2746 [A] ❌ 1VQ8_E:1, 1VQ8_0:2785 no longer at interface
E:65 [PHE] 0:2793 [A] G:68 [ALA] A:2754 [A] ❌ 7RYG_G:68 no longer at interface
E:57 [LYS] 0:1139 [U] G:60 [ASP] A:1032 [U] ❌ 7RYG_G:60 no longer at interface
E:57 [LYS] 0:2792 [A] G:60 [ASP] A:2753 [A] ❌ 7RYG_G:60 no longer at interface
E:171 [LYS] 0:2780 [C] G:167 [GLU] A:2741 [C] ❌ 7RYG_G:167 no longer at interface
E:150 [GLN] 0:2779 [G] G:150 [ALA] A:2740 [G] ❌ 7RYG_G:150 no longer at interface
E:119 [HIS] 0:2796 [U] G:118 [PRO] A:2757 [G] ❌ 7RYG_G:118 no longer at interface
E:140 [ALA] 0:2780 [C] G:140 [LEU] A:2741 [C] ❌ 1VQ8_E:140 no longer at interface
E:152 [THR] 0:2703 [A] G:152 [ARG] A:2662 [C] ❌ 1VQ8_E:152 no longer at interface
E:164 [ASP] 0:2694 [A] G:160 [LYS] A:2653 [A] ❌ 1VQ8_E:164 no longer at interface
E:164 [ASP] 0:2695 [C] G:160 [LYS] A:2654 [C] ❌ 1VQ8_E:164 no longer at interface
E:1 [PRO] 0:2784 [A] G:2 [SER] A:2745 [A] ❌ 1VQ8_E:1 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L6 0.92 3.83 0.17 0.77 0.92 0.74 0.77 0.63 0.58 0.14 0.53


Other pairs involving 1VQ8_E_0 or 7RYG_G_A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 6S0Z_G_A 0.59 0.93 2.63 0.18 Ribosomal protein L6 compare
1VQ8_E_0 6AZ3_E_2 0.85 0.82 2.44 0.5 Ribosomal protein L6 compare
1VQ8_E_0 7K00_g_a 0.71 0.9 2.26 0.2 Ribosomal protein L6 compare
1VQ8_E_0 6AZ3_E_4 0.84 0.86 1.45 0.45 Ribosomal protein L6 compare
1VQ8_E_0 1YHQ_E_0 1.00 1.0 0.22 1.0 Ribosomal protein L6 Archaeal large subunit ribosomal RNA compare
1VQ8_E_0 7O7Y_BH_B5 0.81 0.94 2.38 0.55 Ribosomal protein L6 compare
1VQ8_E_0 4Y4O_1H_1A 0.72 0.93 1.67 0.15 Ribosomal protein L6 compare
1VQ8_E_0 7RYG_G_A 0.63 0.92 3.83 0.17 Ribosomal protein L6 compare
7K00_g_a 7RYG_G_A 0.88 0.99 2.43 0.71 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6AZ3_E_4 7RYG_G_A 0.69 0.81 2.41 0.15 Ribosomal protein L6 compare
4Y4O_1H_1A 7RYG_G_A 0.75 0.96 2.99 0.49 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6S0Z_G_A 7RYG_G_A 0.88 0.98 1.9 0.59 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
1YHQ_E_0 7RYG_G_A 0.64 0.92 3.91 0.17 Ribosomal protein L6 compare