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All interfaces > All interologs > Interface groups > group121 > 1YHQ_E_0

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_E
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
E:31 [ARG] 0:2781 [U] 4.72 75.17
E:31 [ARG] 0:2793 [A] 4.36 0:2791 [U] 75.17
E:31 [ARG] 0:2794 [G] 4.43 0:2780 [C] 75.17
E:34 [TRP] 0:2793 [A] 3.45 0:2791 [U] sugar:BB 32.96
E:35 [TYR] 0:2793 [A] 3.46 0:2791 [U] 46.36
E:54 [ASP] 0:1140 [C] 4.99 0:1223 [G] 37.77
E:55 [ASN] 0:1139 [U] 4.57 0:1224 [G] 68.04
E:55 [ASN] 0:1140 [C] 3.36 0:1223 [G] 68.04
E:56 [ALA] 0:1139 [U] 3.86 0:1224 [G] 71.54
E:56 [ALA] 0:1140 [C] 2.71 0:1223 [G] 71.54
E:56 [ALA] 0:2784 [A] 3.54 0:2788 [A] sugar:BB 71.54
E:57 [LYS] 0:1117 [A] 4.4 57.01
E:57 [LYS] 0:1118 [A] 4.91 0:1244 [U] 57.01
E:57 [LYS] 0:1138 [G] 3.63 0:1225 [C] 57.01
E:57 [LYS] 0:1139 [U] 4.08 0:1224 [G] 57.01
E:57 [LYS] 0:1140 [C] 4.9 0:1223 [G] 57.01
E:57 [LYS] 0:2792 [A] 4.51 0:2782 [G] 57.01
E:59 [MET] 0:2783 [A] 3.76 0:2789 [U] sugar:BB 49.71
E:59 [MET] 0:2784 [A] 4.35 0:2788 [A] 49.71
E:60 [SER] 0:2783 [A] 2.62 0:2789 [U] sugar:BB 79.59
E:60 [SER] 0:2784 [A] 3.07 0:2788 [A] sugar:SC 79.59
E:60 [SER] 0:2792 [A] 4.04 0:2782 [G] 79.59
E:61 [THR] 0:2783 [A] 4.62 0:2789 [U] 45.01
E:61 [THR] 0:2792 [A] 3.74 0:2782 [G] 45.01
E:61 [THR] 0:2793 [A] 4.31 0:2791 [U] 45.01
E:63 [GLY] 0:2782 [G] 4.92 0:2792 [A] 65.25
E:63 [GLY] 0:2783 [A] 3.6 0:2789 [U] 65.25
E:64 [THR] 0:2782 [G] 2.73 0:2792 [A] sugar:SC 93.82
E:64 [THR] 0:2783 [A] 3.11 0:2789 [U] sugar:SC 93.82
E:64 [THR] 0:2792 [A] 3.08 0:2782 [G] base:SC, base:SC 93.82
E:64 [THR] 0:2793 [A] 3.65 0:2791 [U] 93.82
E:65 [PHE] 0:2793 [A] 4.02 0:2791 [U] 23.96
E:67 [SER] 0:2782 [G] 3.45 0:2792 [A] 78.53
E:67 [SER] 0:2783 [A] 2.47 0:2789 [U] 78.53
E:68 [HIS] 0:2781 [U] 3.44 81.52
E:68 [HIS] 0:2782 [G] 3.77 0:2792 [A] 81.52
E:68 [HIS] 0:2793 [A] 2.9 0:2791 [U] base:SC 81.52
E:71 [ASN] 0:2781 [U] 3.67 97.5
E:71 [ASN] 0:2782 [G] 2.7 0:2792 [A] 97.5
E:82 [TYR] 0:2780 [C] 4.3 0:2794 [G] 75.92
E:82 [TYR] 0:2781 [U] 2.65 75.92
E:89 [SER] 0:2695 [C] 4.61 0:2700 [G] 72.54
E:90 [HIS] 0:2693 [U] 4.64 0:2702 [A] 99.0
E:90 [HIS] 0:2694 [A] 3.39 0:2701 [G] 99.0
E:90 [HIS] 0:2695 [C] 3.97 0:2700 [G] 99.0
E:91 [PHE] 0:2693 [U] 3.92 0:2702 [A] 98.9
E:91 [PHE] 0:2694 [A] 3.21 0:2701 [G] 98.9
E:108 [LEU] 0:2702 [A] 4.89 0:2693 [U] 68.26
E:108 [LEU] 0:2703 [A] 3.96 0:2691 [A] 68.26
E:109 [GLY] 0:2690 [U] 4.64 0:2704 [C] 98.9
E:109 [GLY] 0:2703 [A] 3.68 0:2691 [A] 98.9
E:109 [GLY] 0:2704 [C] 4.99 0:2690 [U] 98.9
E:110 [GLU] 0:2703 [A] 3.61 0:2691 [A] 88.43
E:110 [GLU] 0:2704 [C] 3.24 0:2690 [U] 88.43
E:111 [LYS] 0:2689 [A] 4.25 0:2705 [U] 81.31
E:111 [LYS] 0:2690 [U] 3.14 0:2704 [C] 81.31
E:111 [LYS] 0:2704 [C] 3.04 0:2690 [U] base:BB, base:BB 81.31
E:111 [LYS] 0:2705 [U] 4.3 0:2689 [A] 81.31
E:112 [ALA] 0:2704 [C] 2.85 0:2690 [U] base:BB 4.05
E:112 [ALA] 0:2705 [U] 3.23 0:2689 [A] 4.05
E:119 [HIS] 0:2796 [U] 3.48 0:2778 [A] sugar:SC 4.33
E:119 [HIS] 0:2797 [C] 4.73 0:2777 [G] 4.33
E:138 [ILE] 0:2780 [C] 4.91 0:2794 [G] 70.96
E:138 [ILE] 0:2781 [U] 3.81 70.96
E:138 [ILE] 0:2782 [G] 4.38 0:2792 [A] 70.96
E:139 [GLU] 0:2780 [C] 4.01 0:2794 [G] 79.04
E:139 [GLU] 0:2781 [U] 2.8 sugar:SC 79.04
E:139 [GLU] 0:2794 [G] 3.38 0:2780 [C] base:SC 79.04
E:139 [GLU] 0:2795 [C] 4.44 0:2779 [G] 79.04
E:142 [GLY] 0:2780 [C] 3.51 0:2794 [G] 85.33
E:142 [GLY] 0:2781 [U] 4.7 85.33
E:143 [GLN] 0:2779 [G] 2.82 0:2795 [C] base:SC 88.3
E:143 [GLN] 0:2780 [C] 2.96 0:2794 [G] sugar:SC 88.3
E:143 [GLN] 0:2795 [C] 4.38 0:2779 [G] 88.3
E:143 [GLN] 0:2796 [U] 3.53 0:2778 [A] 88.3
E:146 [ALA] 0:2779 [G] 3.72 0:2795 [C] 89.12
E:146 [ALA] 0:2780 [C] 3.55 0:2794 [G] 89.12
E:147 [ASP] 0:2796 [U] 3.6 0:2778 [A] sugar:SC 79.84
E:150 [GLN] 0:2778 [A] 2.81 0:2796 [U] sugar:SC 51.03
E:150 [GLN] 0:2779 [G] 4.0 0:2795 [C] 51.03
E:153 [ARG] 0:2560 [C] 3.19 0:2573 [G] 64.44
E:153 [ARG] 0:2561 [C] 2.65 0:2572 [G] 64.44
E:153 [ARG] 0:2777 [G] 3.96 0:2797 [C] 64.44
E:153 [ARG] 0:2778 [A] 3.46 0:2796 [U] 64.44
E:155 [ASN] 0:2560 [C] 3.79 0:2573 [G] 56.62
E:155 [ASN] 0:2561 [C] 3.39 0:2572 [G] 56.62
E:156 [ASP] 0:2567 [G] 4.55 50.91
E:156 [ASP] 0:2568 [A] 4.86 50.91
E:157 [LYS] 0:2565 [C] 4.54 72.15
E:157 [LYS] 0:2567 [G] 3.34 72.15
E:157 [LYS] 0:2568 [A] 4.44 72.15
E:157 [LYS] 0:2694 [A] 4.43 0:2701 [G] 72.15
E:157 [LYS] 0:2702 [A] 3.92 0:2693 [U] 72.15
E:158 [ASP] 0:2565 [C] 3.57 base/AA stacks 98.41
E:158 [ASP] 0:2566 [A] 3.32 98.41
E:158 [ASP] 0:2567 [G] 2.81 98.41
E:160 [ARG] 0:2564 [G] 4.44 0:2510 [C] 98.74
E:160 [ARG] 0:2565 [C] 3.33 base/AA stacks 98.74
E:160 [ARG] 0:2566 [A] 4.48 98.74
E:161 [VAL] 0:2566 [A] 3.53 66.94
E:161 [VAL] 0:2695 [C] 3.61 0:2700 [G] 66.94
E:161 [VAL] 0:2696 [G] 4.19 66.94
E:162 [PHE] 0:2566 [A] 3.55 93.48
E:162 [PHE] 0:2567 [G] 3.77 93.48
E:162 [PHE] 0:2694 [A] 3.78 0:2701 [G] 93.48
E:162 [PHE] 0:2695 [C] 3.47 0:2700 [G] 93.48

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 1YHQ_E_0 E: 50s ribosomal protein l6p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14135 Ribosomal protein L6 Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 1YHQ_E_0 1.00 1.0 0.22 1.0 Ribosomal protein L6 Archaeal large subunit ribosomal RNA compare
1YHQ_E_0 6AZ3_E_4 0.85 0.86 1.35 0.42 Ribosomal protein L6 compare
1YHQ_E_0 4Y4O_1H_1A 0.71 0.93 1.96 0.15 Ribosomal protein L6 compare
1YHQ_E_0 6AZ3_E_2 0.83 0.82 2.3 0.5 Ribosomal protein L6 compare
1YHQ_E_0 7O7Y_BH_B5 0.82 0.94 2.31 0.54 Ribosomal protein L6 compare
1YHQ_E_0 7K00_g_a 0.71 0.91 2.33 0.2 Ribosomal protein L6 compare
1YHQ_E_0 6S0Z_G_A 0.60 0.93 2.65 0.18 Ribosomal protein L6 compare
1YHQ_E_0 7RYG_G_A 0.64 0.92 3.91 0.17 Ribosomal protein L6 compare