RNAprotDB

All interfaces > All interologs > Interface groups > group121 > 4Y4O_1H_1A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4Y4O_1H
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1H:2 [SER] 1A:1158 [G] 4.08 1A:1089 [C] 97.71
1H:2 [SER] 1A:1159 [U] 3.93 1A:1088 [G] 97.71
1H:2 [SER] 1A:2762 [A] 3.55 1A:2766 [A] 97.71
1H:2 [SER] 1A:2763 [A] 4.51 1A:2765 [C] 97.71
1H:2 [SER] 1A:2764 [G] 2.51 1A:1095 [C] 97.71
1H:3 [ARG] 1A:2761 [A] 2.87 1A:2767 [U] 85.21
1H:3 [ARG] 1A:2762 [A] 2.41 1A:2766 [A] 85.21
1H:3 [ARG] 1A:2764 [G] 4.15 1A:1095 [C] 85.21
1H:4 [ILE] 1A:2761 [A] 3.45 1A:2767 [U] 79.97
1H:4 [ILE] 1A:2762 [A] 3.61 1A:2766 [A] 79.97
1H:4 [ILE] 1A:2764 [G] 3.84 1A:1095 [C] 79.97
1H:4 [ILE] 1A:2765 [C] 3.33 1A:2763 [A] 79.97
1H:5 [GLY] 1A:2762 [A] 4.92 1A:2766 [A] 72.6
1H:6 [ARG] 1A:1158 [G] 4.22 1A:1089 [C] 63.48
1H:59 [ARG] 1A:1080 [G] 4.9 1A:1167 [C] 62.2
1H:59 [ARG] 1A:1081 [U] 3.07 1A:1166 [G] 62.2
1H:59 [ARG] 1A:1082 [G] 2.27 1A:1165 [C] 62.2
1H:59 [ARG] 1A:2762 [A] 3.34 1A:2766 [A] sugar:BB 62.2
1H:62 [LYS] 1A:2761 [A] 3.63 1A:2767 [U] sugar:BB 60.25
1H:62 [LYS] 1A:2762 [A] 2.93 1A:2766 [A] sugar:SC 60.25
1H:62 [LYS] 1A:2763 [A] 3.32 1A:2765 [C] 60.25
1H:63 [SER] 1A:2761 [A] 2.66 1A:2767 [U] sugar:BB 65.03
1H:63 [SER] 1A:2762 [A] 3.3 1A:2766 [A] 65.03
1H:63 [SER] 1A:2770 [A] 3.54 1A:2760 [G] 65.03
1H:64 [LEU] 1A:2761 [A] 4.63 1A:2767 [U] 51.64
1H:64 [LEU] 1A:2770 [A] 4.34 1A:2760 [G] 51.64
1H:64 [LEU] 1A:2771 [A] 3.81 1A:2769 [U] 51.64
1H:65 [HIS] 1A:2761 [A] 4.53 1A:2767 [U] 43.13
1H:66 [GLY] 1A:2760 [G] 4.86 1A:2770 [A] 91.03
1H:66 [GLY] 1A:2761 [A] 3.2 1A:2767 [U] 91.03
1H:67 [LEU] 1A:2760 [G] 3.36 1A:2770 [A] 80.84
1H:67 [LEU] 1A:2761 [A] 3.31 1A:2767 [U] sugar:BB 80.84
1H:67 [LEU] 1A:2770 [A] 3.64 1A:2760 [G] 80.84
1H:67 [LEU] 1A:2771 [A] 3.5 1A:2769 [U] 80.84
1H:70 [THR] 1A:2760 [G] 3.51 1A:2770 [A] 81.48
1H:70 [THR] 1A:2761 [A] 2.47 1A:2767 [U] 81.48
1H:71 [LEU] 1A:2759 [U] 4.5 65.25
1H:71 [LEU] 1A:2760 [G] 4.25 1A:2770 [A] 65.25
1H:71 [LEU] 1A:2771 [A] 3.76 1A:2769 [U] 65.25
1H:74 [ASN] 1A:2759 [U] 3.93 94.96
1H:74 [ASN] 1A:2760 [G] 3.35 1A:2770 [A] 94.96
1H:85 [LYS] 1A:2758 [C] 4.61 1A:2772 [G] 64.66
1H:85 [LYS] 1A:2759 [U] 2.98 64.66
1H:94 [TYR] 1A:2669 [A] 4.77 1A:2676 [G] 86.57
1H:108 [GLY] 1A:2677 [A] 4.63 1A:2668 [U] 99.0
1H:108 [GLY] 1A:2678 [C] 2.93 base:BB 99.0
1H:109 [PHE] 1A:2678 [C] 3.57 67.15
1H:109 [PHE] 1A:2679 [C] 3.55 1A:2665 [U] 67.15
1H:110 [SER] 1A:2665 [U] 3.14 1A:2679 [C] base:SC, sugar:SC 95.64
1H:110 [SER] 1A:2666 [A] 4.76 95.64
1H:110 [SER] 1A:2678 [C] 3.82 95.64
1H:110 [SER] 1A:2679 [C] 2.66 1A:2665 [U] base:BB, base:SC 95.64
1H:110 [SER] 1A:2680 [G] 4.1 1A:2664 [C] 95.64
1H:111 [HIS] 1A:2679 [C] 2.91 1A:2665 [U] sugar:SC 91.39
1H:111 [HIS] 1A:2680 [G] 3.42 1A:2664 [C] 91.39
1H:138 [LYS] 1A:2759 [U] 3.71 82.37
1H:138 [LYS] 1A:2760 [G] 2.59 1A:2770 [A] 82.37
1H:139 [GLN] 1A:2758 [C] 2.64 1A:2772 [G] base:SC, sugar:BB 74.1
1H:139 [GLN] 1A:2759 [U] 3.26 74.1
1H:139 [GLN] 1A:2772 [G] 3.55 1A:2758 [C] base:SC 74.1
1H:139 [GLN] 1A:2773 [C] 4.2 1A:2757 [G] 74.1
1H:140 [LYS] 1A:2758 [C] 4.82 1A:2772 [G] 35.52
1H:142 [GLY] 1A:2758 [C] 3.59 1A:2772 [G] 79.0
1H:142 [GLY] 1A:2759 [U] 3.9 79.0
1H:143 [GLN] 1A:2757 [G] 2.78 1A:2773 [C] base:SC 70.73
1H:143 [GLN] 1A:2758 [C] 3.21 1A:2772 [G] 70.73
1H:143 [GLN] 1A:2773 [C] 4.13 1A:2757 [G] 70.73
1H:143 [GLN] 1A:2774 [G] 3.43 1A:2756 [C] 70.73
1H:146 [ALA] 1A:2757 [G] 3.76 1A:2773 [C] 83.99
1H:146 [ALA] 1A:2758 [C] 4.02 1A:2772 [G] 83.99
1H:147 [ASN] 1A:2774 [G] 4.6 1A:2756 [C] 35.15
1H:152 [ARG] 1A:2678 [C] 2.83 base:SC, base:SC 87.12
1H:153 [LYS] 1A:2756 [C] 4.14 1A:2774 [G] 52.62
1H:156 [ALA] 1A:2542 [A] 3.59 74.98
1H:157 [TYR] 1A:2541 [G] 4.43 1A:2487 [C] 94.94
1H:157 [TYR] 1A:2542 [A] 3.19 94.94
1H:157 [TYR] 1A:2543 [A] 3.28 1A:2674 [A] 94.94
1H:157 [TYR] 1A:2544 [G] 4.59 94.94
1H:158 [HIS] 1A:2543 [A] 4.43 1A:2674 [A] 89.35
1H:158 [HIS] 1A:2670 [C] 2.95 1A:2675 [G] 89.35
1H:158 [HIS] 1A:2671 [G] 2.9 89.35
1H:160 [LYS] 1A:2669 [A] 2.58 1A:2676 [G] sugar:SC 90.69
1H:160 [LYS] 1A:2670 [C] 2.78 1A:2675 [G] 90.69
1H:164 [TYR] 1A:2758 [C] 4.4 1A:2772 [G] 69.78
1H:172 [LYS] 1A:2540 [U] 4.11 1A:2547 [G] 98.58
1H:172 [LYS] 1A:2541 [G] 2.86 1A:2487 [C] 98.58
1H:172 [LYS] 1A:2542 [A] 2.81 base:SC 98.58
1H:173 [PRO] 1A:2543 [A] 4.87 1A:2674 [A] 57.31
1H:174 [GLY] 1A:2543 [A] 3.77 1A:2674 [A] 73.15
1H:175 [LYS] 1A:2543 [A] 3.4 1A:2674 [A] 95.62
1H:175 [LYS] 1A:2671 [G] 3.06 sugar:SC 95.62
1H:175 [LYS] 1A:2672 [A] 2.8 base:SC 95.62
1H:175 [LYS] 1A:2673 [G] 3.58 95.62

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 4Y4O_1H_1A 1H: 50s ribosomal protein l6, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P0DOY8 Ribosomal protein L6 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 4Y4O_1H_1A 0.72 0.93 1.67 0.15 Ribosomal protein L6 compare
1YHQ_E_0 4Y4O_1H_1A 0.71 0.93 1.96 0.15 Ribosomal protein L6 compare
4Y4O_1H_1A 6AZ3_E_4 0.72 0.82 1.87 0.06 Ribosomal protein L6 compare
4Y4O_1H_1A 6S0Z_G_A 0.77 0.97 1.91 0.53 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 7K00_g_a 0.82 0.97 1.64 0.54 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 7O7Y_BH_B5 0.58 0.89 2.14 0.1 Ribosomal protein L6 compare
4Y4O_1H_1A 7RYG_G_A 0.75 0.96 2.99 0.49 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare