RNAprotDB

All interfaces > All interologs > Interface groups > group121 > 4Y4O_1H_1A vs 7O7Y_BH_B5

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_1H
4Y4O_1A
7O7Y_BH
7O7Y_B5
Conserved?
1H:67 [LEU] 1A:2760 [G] BH:72 [THR] B5:4436 [G] ✔
1H:67 [LEU] 1A:2761 [A] BH:72 [THR] B5:4437 [A] ✔
1H:67 [LEU] 1A:2770 [A] BH:72 [THR] B5:4446 [A] ✔
1H:67 [LEU] 1A:2771 [A] BH:72 [THR] B5:4447 [A] ✔
1H:156 [ALA] 1A:2542 [A] BH:173 [ARG] B5:4222 [C] ✔
1H:147 [ASN] 1A:2774 [G] BH:160 [LEU] B5:4450 [C] ✔
1H:146 [ALA] 1A:2757 [G] BH:159 [ALA] B5:4433 [A] ✔
1H:146 [ALA] 1A:2758 [C] BH:159 [ALA] B5:4434 [C] ✔
1H:108 [GLY] 1A:2678 [C] BH:119 [GLY] B5:4357 [A] ✔
1H:157 [TYR] 1A:2543 [A] BH:174 [LYS] B5:4223 [A] ✔
1H:85 [LYS] 1A:2758 [C] BH:90 [TYR] B5:4434 [C] ✔
1H:85 [LYS] 1A:2759 [U] BH:90 [TYR] B5:4435 [PSU] ✔
1H:143 [GLN] 1A:2758 [C] BH:156 [ASN] B5:4434 [C] ✔
1H:143 [GLN] 1A:2774 [G] BH:156 [ASN] B5:4450 [C] ✔
1H:142 [GLY] 1A:2758 [C] BH:155 [SER] B5:4434 [C] ✔
1H:142 [GLY] 1A:2759 [U] BH:155 [SER] B5:4435 [PSU] ✔
1H:70 [THR] 1A:2760 [G] BH:75 [SER] B5:4436 [G] ✔
1H:70 [THR] 1A:2761 [A] BH:75 [SER] B5:4437 [A] ✔
1H:111 [HIS] 1A:2679 [C] BH:122 [TYR] B5:4358 [C] ✔
1H:111 [HIS] 1A:2680 [G] BH:122 [TYR] B5:4359 [C] ✔
1H:66 [GLY] 1A:2760 [G] BH:71 [ARG] B5:4436 [G] ✔
1H:66 [GLY] 1A:2761 [A] BH:71 [ARG] B5:4437 [A] ✔
1H:71 [LEU] 1A:2759 [U] BH:76 [HIS] B5:4435 [PSU] ✔
1H:71 [LEU] 1A:2760 [G] BH:76 [HIS] B5:4436 [G] ✔
1H:71 [LEU] 1A:2771 [A] BH:76 [HIS] B5:4447 [A] ✔
1H:59 [ARG] 1A:1081 [U] BH:64 [ARG] B5:1888 [U] ✔
1H:59 [ARG] 1A:1082 [G] BH:64 [ARG] B5:1889 [U] ✔
1H:59 [ARG] 1A:2762 [A] BH:64 [ARG] B5:4438 [A] ✔
1H:64 [LEU] 1A:2761 [A] BH:69 [THR] B5:4437 [A] ✔
1H:64 [LEU] 1A:2770 [A] BH:69 [THR] B5:4446 [A] ✔
1H:64 [LEU] 1A:2771 [A] BH:69 [THR] B5:4447 [A] ✔
1H:74 [ASN] 1A:2759 [U] BH:79 [ASN] B5:4435 [PSU] ✔
1H:74 [ASN] 1A:2760 [G] BH:79 [ASN] B5:4436 [G] ✔
1H:109 [PHE] 1A:2678 [C] BH:120 [GLU] B5:4357 [A] ✔
1H:109 [PHE] 1A:2679 [C] BH:120 [GLU] B5:4358 [C] ✔
1H:110 [SER] 1A:2665 [U] BH:121 [LYS] B5:4344 [C] ✔
1H:110 [SER] 1A:2679 [C] BH:121 [LYS] B5:4358 [C] ✔
1H:110 [SER] 1A:2680 [G] BH:121 [LYS] B5:4359 [C] ✔
1H:62 [LYS] 1A:2761 [A] BH:67 [LEU] B5:4437 [A] ✔
1H:63 [SER] 1A:2761 [A] BH:68 [ALA] B5:4437 [A] ✔
1H:63 [SER] 1A:2762 [A] BH:68 [ALA] B5:4438 [A] ✔
1H:63 [SER] 1A:2770 [A] BH:68 [ALA] B5:4446 [A] ✔
1H:138 [LYS] 1A:2759 [U] BH:151 [ILE] B5:4435 [PSU] ✔
1H:138 [LYS] 1A:2760 [G] BH:151 [ILE] B5:4436 [G] ✔
1H:158 [HIS] 1A:2543 [A] BH:175 [PHE] B5:4223 [A] ✔
1H:158 [HIS] 1A:2670 [C] BH:175 [PHE] B5:4349 [C] ✔
1H:139 [GLN] 1A:2758 [C] BH:152 [GLU] B5:4434 [C] ✔
1H:139 [GLN] 1A:2759 [U] BH:152 [GLU] B5:4435 [PSU] ✔
1H:139 [GLN] 1A:2772 [G] BH:152 [GLU] B5:4448 [G] ✔
1H:139 [GLN] 1A:2773 [C] BH:152 [GLU] B5:4449 [U] ✔
1H:108 [GLY] 1A:2677 [A] BH:119 [GLY] B5:4356 [A] ❌ 7O7Y_BH_B5
1H:157 [TYR] 1A:2541 [G] BH:174 [LYS] B5:4221 [G] ❌ 7O7Y_BH_B5
1H:157 [TYR] 1A:2542 [A] BH:174 [LYS] B5:4222 [C] ❌ 7O7Y_BH_B5
1H:157 [TYR] 1A:2544 [G] BH:174 [LYS] B5:4224 [G] ❌ 7O7Y_BH_B5
1H:143 [GLN] 1A:2757 [G] BH:156 [ASN] B5:4433 [A] ❌ 7O7Y_BH_B5
1H:143 [GLN] 1A:2773 [C] BH:156 [ASN] B5:4449 [U] ❌ 7O7Y_BH_B5
1H:59 [ARG] 1A:1080 [G] BH:64 [ARG] B5:1887 [G] ❌ 7O7Y_BH_B5
1H:110 [SER] 1A:2678 [C] BH:121 [LYS] B5:4357 [A] ❌ 7O7Y_BH_B5
1H:62 [LYS] 1A:2762 [A] BH:67 [LEU] B5:4438 [A] ❌ 7O7Y_BH_B5
1H:62 [LYS] 1A:2763 [A] BH:67 [LEU] B5:4439 [C] ❌ 7O7Y_BH_B5
1H:158 [HIS] 1A:2671 [G] BH:175 [PHE] B5:4350 [G] ❌ 7O7Y_BH_B5
1H:108 [GLY] 1A:2665 [U] BH:119 [GLY] B5:4344 [C] ❌ 4Y4O_1H_1A
1H:138 [LYS] 1A:2758 [C] BH:151 [ILE] B5:4434 [C] ❌ 4Y4O_1H_1A
1H:156 [ALA] 1A:2543 [A] BH:173 [ARG] B5:4223 [A] ❌ 4Y4O_1H_1A
1H:156 [ALA] 1A:2540 [U] BH:173 [ARG] B5:4220 [A] ❌ 4Y4O_1H_1A
1H:156 [ALA] 1A:2541 [G] BH:173 [ARG] B5:4221 [G] ❌ 4Y4O_1H_1A
1H:157 [TYR] 1A:2671 [G] BH:174 [LYS] B5:4350 [G] ❌ 4Y4O_1H_1A
1H:157 [TYR] 1A:2670 [C] BH:174 [LYS] B5:4349 [C] ❌ 4Y4O_1H_1A
1H:158 [HIS] 1A:2544 [G] BH:175 [PHE] B5:4224 [G] ❌ 4Y4O_1H_1A
1H:158 [HIS] 1A:2669 [A] BH:175 [PHE] B5:4348 [A] ❌ 4Y4O_1H_1A
1H:59 [ARG] 1A:2763 [A] BH:64 [ARG] B5:4439 [C] ❌ 4Y4O_1H_1A
1H:66 [GLY] 1A:2764 [G] BH:71 [ARG] B5:4440 [G] ❌ 4Y4O_1H_1A
1H:66 [GLY] 1A:2762 [A] BH:71 [ARG] B5:4438 [A] ❌ 4Y4O_1H_1A
1H:66 [GLY] 1A:2765 [C] BH:71 [ARG] B5:4441 [C] ❌ 4Y4O_1H_1A
1H:110 [SER] 1A:2666 [A] BH:121 [LYS] B5:4345 [A] ❌ 7O7Y_B5:4345 no longer at interface
1H:6 [ARG] 1A:1158 [G] BH:7 [ASN] B5:1965 [A] ❌ 7O7Y_BH:7, 7O7Y_B5:1965 no longer at interface
1H:110 [SER] 1A:2664 [C] BH:121 [LYS] B5:4343 [U] ❌ 4Y4O_1A:2664 no longer at interface
1H:118 [PRO] 1A:2775 [G] BH:129 [ARG] B5:4451 [A] ❌ 4Y4O_1H:118, 4Y4O_1A:2775 no longer at interface
1H:147 [ASN] 1A:2775 [G] BH:160 [LEU] B5:4451 [A] ❌ 4Y4O_1A:2775 no longer at interface
1H:150 [ALA] 1A:2775 [G] BH:163 [GLN] B5:4451 [A] ❌ 4Y4O_1H:150, 4Y4O_1A:2775 no longer at interface
1H:155 [SER] 1A:2539 [C] BH:172 [ILE] B5:4219 [A] ❌ 4Y4O_1H:155, 4Y4O_1A:2539 no longer at interface
1H:92 [ILE] 1A:2668 [U] BH:98 [HIS] B5:4347 [U] ❌ 4Y4O_1H:92, 4Y4O_1A:2668 no longer at interface
1H:93 [GLY] 1A:2668 [U] BH:99 [PHE] B5:4347 [U] ❌ 4Y4O_1H:93, 4Y4O_1A:2668 no longer at interface
1H:94 [TYR] 1A:2669 [A] BH:100 [PRO] B5:4348 [A] ❌ 7O7Y_BH:100 no longer at interface
1H:164 [TYR] 1A:2758 [C] BH:181 [VAL] B5:4434 [C] ❌ 7O7Y_BH:181 no longer at interface
1H:65 [HIS] 1A:2761 [A] BH:70 [VAL] B5:4437 [A] ❌ 7O7Y_BH:70 no longer at interface
1H:152 [ARG] 1A:2678 [C] BH:165 [THR] B5:4357 [A] ❌ 7O7Y_BH:165 no longer at interface
1H:153 [LYS] 1A:2756 [C] BH:166 [THR] B5:4432 [G] ❌ 7O7Y_BH:166 no longer at interface
1H:140 [LYS] 1A:2758 [C] BH:153 [LEU] B5:4434 [C] ❌ 7O7Y_BH:153 no longer at interface
1H:5 [GLY] 1A:2762 [A] BH:6 [SER] B5:4438 [A] ❌ 7O7Y_BH:6 no longer at interface
1H:160 [LYS] 1A:2669 [A] BH:177 [ASP] B5:4348 [A] ❌ 7O7Y_BH:177 no longer at interface
1H:160 [LYS] 1A:2670 [C] BH:177 [ASP] B5:4349 [C] ❌ 7O7Y_BH:177 no longer at interface
1H:118 [PRO] 1A:2774 [G] BH:129 [ARG] B5:4450 [C] ❌ 4Y4O_1H:118 no longer at interface
1H:150 [ALA] 1A:2757 [G] BH:163 [GLN] B5:4433 [A] ❌ 4Y4O_1H:150 no longer at interface
1H:150 [ALA] 1A:2756 [C] BH:163 [GLN] B5:4432 [G] ❌ 4Y4O_1H:150 no longer at interface
1H:150 [ALA] 1A:2774 [G] BH:163 [GLN] B5:4450 [C] ❌ 4Y4O_1H:150 no longer at interface
1H:155 [SER] 1A:2542 [A] BH:172 [ILE] B5:4222 [C] ❌ 4Y4O_1H:155 no longer at interface
1H:35 [VAL] 1A:2759 [U] BH:36 [ARG] B5:4435 [PSU] ❌ 4Y4O_1H:35 no longer at interface
1H:35 [VAL] 1A:2771 [A] BH:36 [ARG] B5:4447 [A] ❌ 4Y4O_1H:35 no longer at interface
1H:35 [VAL] 1A:2772 [G] BH:36 [ARG] B5:4448 [G] ❌ 4Y4O_1H:35 no longer at interface
1H:38 [SER] 1A:2771 [A] BH:41 [ILE] B5:4447 [A] ❌ 4Y4O_1H:38 no longer at interface
1H:60 [ARG] 1A:1080 [G] BH:65 [LYS] B5:1887 [G] ❌ 4Y4O_1H:60 no longer at interface
1H:60 [ARG] 1A:1081 [U] BH:65 [LYS] B5:1888 [U] ❌ 4Y4O_1H:60 no longer at interface
1H:60 [ARG] 1A:2770 [A] BH:65 [LYS] B5:4446 [A] ❌ 4Y4O_1H:60 no longer at interface
1H:92 [ILE] 1A:2670 [C] BH:98 [HIS] B5:4349 [C] ❌ 4Y4O_1H:92 no longer at interface
1H:92 [ILE] 1A:2669 [A] BH:98 [HIS] B5:4348 [A] ❌ 4Y4O_1H:92 no longer at interface
1H:93 [GLY] 1A:2669 [A] BH:99 [PHE] B5:4348 [A] ❌ 4Y4O_1H:93 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L6 0.89 2.14 0.10 0.81 0.89 0.59 0.86 0.58 0.62 0.17 0.58


Other pairs involving 4Y4O_1H_1A or 7O7Y_BH_B5

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 7O7Y_BH_B5 0.81 0.94 2.38 0.55 Ribosomal protein L6 compare
1VQ8_E_0 4Y4O_1H_1A 0.72 0.93 1.67 0.15 Ribosomal protein L6 compare
7K00_g_a 7O7Y_BH_B5 0.58 0.9 2.4 0.1 Ribosomal protein L6 compare
6AZ3_E_4 7O7Y_BH_B5 0.90 0.92 0.54 0.61 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA compare
4Y4O_1H_1A 7RYG_G_A 0.75 0.96 2.99 0.49 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 7O7Y_BH_B5 0.58 0.89 2.14 0.1 Ribosomal protein L6 compare
4Y4O_1H_1A 6AZ3_E_4 0.72 0.82 1.87 0.06 Ribosomal protein L6 compare
4Y4O_1H_1A 7K00_g_a 0.82 0.97 1.64 0.54 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 6S0Z_G_A 0.77 0.97 1.91 0.53 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6S0Z_G_A 7O7Y_BH_B5 0.48 0.89 2.89 0.15 Ribosomal protein L6 compare
6AZ3_E_2 7O7Y_BH_B5 0.98 0.92 0.68 0.56 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA compare
1YHQ_E_0 7O7Y_BH_B5 0.82 0.94 2.31 0.54 Ribosomal protein L6 compare
1YHQ_E_0 4Y4O_1H_1A 0.71 0.93 1.96 0.15 Ribosomal protein L6 compare