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All interfaces > All interologs > Interface groups > group121 > 4Y4O_1H_1A vs 7RYG_G_A

Interface analysis


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Common contacts -

4Y4O_1H
4Y4O_1A
7RYG_G
7RYG_A
Conserved?
1H:67 [LEU] 1A:2760 [G] G:67 [THR] A:2743 [G] ✔
1H:67 [LEU] 1A:2761 [A] G:67 [THR] A:2744 [A] ✔
1H:67 [LEU] 1A:2770 [A] G:67 [THR] A:2753 [A] ✔
1H:156 [ALA] 1A:2542 [A] G:156 [PRO] A:2526 [A] ✔
1H:147 [ASN] 1A:2774 [G] G:147 [GLU] A:2757 [G] ✔
1H:146 [ALA] 1A:2757 [G] G:146 [ALA] A:2740 [G] ✔
1H:146 [ALA] 1A:2758 [C] G:146 [ALA] A:2741 [C] ✔
1H:108 [GLY] 1A:2677 [A] G:108 [GLY] A:2661 [A] ✔
1H:108 [GLY] 1A:2678 [C] G:108 [GLY] A:2662 [C] ✔
1H:157 [TYR] 1A:2542 [A] G:157 [TYR] A:2526 [A] ✔
1H:157 [TYR] 1A:2543 [A] G:157 [TYR] A:2527 [A] ✔
1H:157 [TYR] 1A:2544 [G] G:157 [TYR] A:2528 [G] ✔
1H:85 [LYS] 1A:2759 [U] G:85 [ARG] A:2742 [U] ✔
1H:143 [GLN] 1A:2757 [G] G:143 [GLN] A:2740 [G] ✔
1H:143 [GLN] 1A:2758 [C] G:143 [GLN] A:2741 [C] ✔
1H:143 [GLN] 1A:2774 [G] G:143 [GLN] A:2757 [G] ✔
1H:142 [GLY] 1A:2758 [C] G:142 [GLY] A:2741 [C] ✔
1H:142 [GLY] 1A:2759 [U] G:142 [GLY] A:2742 [U] ✔
1H:3 [ARG] 1A:2762 [A] G:3 [ARG] A:2745 [A] ✔
1H:3 [ARG] 1A:2764 [G] G:3 [ARG] A:2747 [G] ✔
1H:4 [ILE] 1A:2761 [A] G:4 [VAL] A:2744 [A] ✔
1H:4 [ILE] 1A:2762 [A] G:4 [VAL] A:2745 [A] ✔
1H:4 [ILE] 1A:2764 [G] G:4 [VAL] A:2747 [G] ✔
1H:4 [ILE] 1A:2765 [C] G:4 [VAL] A:2748 [C] ✔
1H:2 [SER] 1A:2762 [A] G:2 [SER] A:2745 [A] ✔
1H:2 [SER] 1A:2763 [A] G:2 [SER] A:2746 [A] ✔
1H:70 [THR] 1A:2760 [G] G:70 [ALA] A:2743 [G] ✔
1H:70 [THR] 1A:2761 [A] G:70 [ALA] A:2744 [A] ✔
1H:111 [HIS] 1A:2679 [C] G:111 [HIS] A:2663 [C] ✔
1H:111 [HIS] 1A:2680 [G] G:111 [HIS] A:2664 [A] ✔
1H:66 [GLY] 1A:2761 [A] G:66 [GLY] A:2744 [A] ✔
1H:152 [ARG] 1A:2678 [C] G:152 [ARG] A:2662 [C] ✔
1H:71 [LEU] 1A:2760 [G] G:71 [VAL] A:2743 [G] ✔
1H:71 [LEU] 1A:2771 [A] G:71 [VAL] A:2754 [A] ✔
1H:64 [LEU] 1A:2770 [A] G:64 [GLN] A:2753 [A] ✔
1H:64 [LEU] 1A:2771 [A] G:64 [GLN] A:2754 [A] ✔
1H:74 [ASN] 1A:2759 [U] G:74 [ASN] A:2742 [U] ✔
1H:74 [ASN] 1A:2760 [G] G:74 [ASN] A:2743 [G] ✔
1H:109 [PHE] 1A:2678 [C] G:109 [TYR] A:2662 [C] ✔
1H:109 [PHE] 1A:2679 [C] G:109 [TYR] A:2663 [C] ✔
1H:110 [SER] 1A:2665 [U] G:110 [SER] A:2649 [U] ✔
1H:110 [SER] 1A:2678 [C] G:110 [SER] A:2662 [C] ✔
1H:110 [SER] 1A:2679 [C] G:110 [SER] A:2663 [C] ✔
1H:110 [SER] 1A:2680 [G] G:110 [SER] A:2664 [A] ✔
1H:175 [LYS] 1A:2543 [A] G:175 [LYS] A:2527 [A] ✔
1H:62 [LYS] 1A:2761 [A] G:62 [TRP] A:2744 [A] ✔
1H:63 [SER] 1A:2761 [A] G:63 [MET] A:2744 [A] ✔
1H:63 [SER] 1A:2762 [A] G:63 [MET] A:2745 [A] ✔
1H:63 [SER] 1A:2770 [A] G:63 [MET] A:2753 [A] ✔
1H:138 [LYS] 1A:2759 [U] G:138 [LYS] A:2742 [U] ✔
1H:138 [LYS] 1A:2760 [G] G:138 [LYS] A:2743 [G] ✔
1H:140 [LYS] 1A:2758 [C] G:140 [LEU] A:2741 [C] ✔
1H:174 [GLY] 1A:2543 [A] G:174 [ALA] A:2527 [A] ✔
1H:158 [HIS] 1A:2670 [C] G:158 [LYS] A:2654 [C] ✔
1H:158 [HIS] 1A:2671 [G] G:158 [LYS] A:2655 [G] ✔
1H:172 [LYS] 1A:2540 [U] G:172 [LYS] A:2524 [U] ✔
1H:172 [LYS] 1A:2541 [G] G:172 [LYS] A:2525 [G] ✔
1H:172 [LYS] 1A:2542 [A] G:172 [LYS] A:2526 [A] ✔
1H:139 [GLN] 1A:2758 [C] G:139 [GLN] A:2741 [C] ✔
1H:139 [GLN] 1A:2759 [U] G:139 [GLN] A:2742 [U] ✔
1H:139 [GLN] 1A:2772 [G] G:139 [GLN] A:2755 [G] ✔
1H:139 [GLN] 1A:2773 [C] G:139 [GLN] A:2756 [C] ✔
1H:160 [LYS] 1A:2669 [A] G:160 [LYS] A:2653 [A] ✔
1H:160 [LYS] 1A:2670 [C] G:160 [LYS] A:2654 [C] ✔
1H:67 [LEU] 1A:2771 [A] G:67 [THR] A:2754 [A] ❌ 7RYG_G_A
1H:157 [TYR] 1A:2541 [G] G:157 [TYR] A:2525 [G] ❌ 7RYG_G_A
1H:85 [LYS] 1A:2758 [C] G:85 [ARG] A:2741 [C] ❌ 7RYG_G_A
1H:143 [GLN] 1A:2773 [C] G:143 [GLN] A:2756 [C] ❌ 7RYG_G_A
1H:3 [ARG] 1A:2761 [A] G:3 [ARG] A:2744 [A] ❌ 7RYG_G_A
1H:2 [SER] 1A:1158 [G] G:2 [SER] A:1109 [G] ❌ 7RYG_G_A
1H:2 [SER] 1A:1159 [U] G:2 [SER] A:1110 [U] ❌ 7RYG_G_A
1H:2 [SER] 1A:2764 [G] G:2 [SER] A:2747 [G] ❌ 7RYG_G_A
1H:66 [GLY] 1A:2760 [G] G:66 [GLY] A:2743 [G] ❌ 7RYG_G_A
1H:71 [LEU] 1A:2759 [U] G:71 [VAL] A:2742 [U] ❌ 7RYG_G_A
1H:64 [LEU] 1A:2761 [A] G:64 [GLN] A:2744 [A] ❌ 7RYG_G_A
1H:175 [LYS] 1A:2671 [G] G:175 [LYS] A:2655 [G] ❌ 7RYG_G_A
1H:62 [LYS] 1A:2762 [A] G:62 [TRP] A:2745 [A] ❌ 7RYG_G_A
1H:62 [LYS] 1A:2763 [A] G:62 [TRP] A:2746 [A] ❌ 7RYG_G_A
1H:158 [HIS] 1A:2543 [A] G:158 [LYS] A:2527 [A] ❌ 7RYG_G_A
1H:138 [LYS] 1A:2758 [C] G:138 [LYS] A:2741 [C] ❌ 4Y4O_1H_1A
1H:139 [GLN] 1A:2757 [G] G:139 [GLN] A:2740 [G] ❌ 4Y4O_1H_1A
1H:3 [ARG] 1A:1159 [U] G:3 [ARG] A:1110 [U] ❌ 4Y4O_1H_1A
1H:3 [ARG] 1A:2763 [A] G:3 [ARG] A:2746 [A] ❌ 4Y4O_1H_1A
1H:3 [ARG] 1A:1158 [G] G:3 [ARG] A:1109 [G] ❌ 4Y4O_1H_1A
1H:110 [SER] 1A:2666 [A] G:110 [SER] A:2650 [A] ❌ 7RYG_A:2650 no longer at interface
1H:175 [LYS] 1A:2672 [A] G:175 [LYS] A:2656 [A] ❌ 7RYG_A:2656 no longer at interface
1H:175 [LYS] 1A:2673 [G] G:175 [LYS] A:2657 [G] ❌ 7RYG_A:2657 no longer at interface
1H:153 [LYS] 1A:2756 [C] G:153 [SER] A:2739 [C] ❌ 7RYG_G:153, 7RYG_A:2739 no longer at interface
1H:3 [ARG] 1A:1095 [C] G:3 [ARG] A:1046 [C] ❌ 4Y4O_1A:1095 no longer at interface
1H:94 [TYR] 1A:2669 [A] G:94 [TYR] A:2653 [A] ❌ 7RYG_G:94 no longer at interface
1H:164 [TYR] 1A:2758 [C] G:164 [TYR] A:2741 [C] ❌ 7RYG_G:164 no longer at interface
1H:65 [HIS] 1A:2761 [A] G:65 [ALA] A:2744 [A] ❌ 7RYG_G:65 no longer at interface
1H:173 [PRO] 1A:2543 [A] G:173 [GLU] A:2527 [A] ❌ 7RYG_G:173 no longer at interface
1H:6 [ARG] 1A:1158 [G] G:6 [LYS] A:1109 [G] ❌ 7RYG_G:6 no longer at interface
1H:5 [GLY] 1A:2762 [A] G:5 [ALA] A:2745 [A] ❌ 7RYG_G:5 no longer at interface
1H:35 [VAL] 1A:2771 [A] G:35 [PHE] A:2754 [A] ❌ 4Y4O_1H:35 no longer at interface
1H:38 [SER] 1A:2771 [A] G:38 [HIS] A:2754 [A] ❌ 4Y4O_1H:38 no longer at interface
1H:58 [GLU] 1A:1081 [U] G:59 [LYS] A:1032 [U] ❌ 4Y4O_1H:58 no longer at interface
1H:92 [ILE] 1A:2669 [A] G:92 [VAL] A:2653 [A] ❌ 4Y4O_1H:92 no longer at interface
1H:92 [ILE] 1A:2670 [C] G:92 [VAL] A:2654 [C] ❌ 4Y4O_1H:92 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L6 Bacterial large subunit ribosomal RNA 0.96 2.99 0.49 0.95 0.96 0.89 0.97 0.75 0.65 0.31 0.44


Other pairs involving 4Y4O_1H_1A or 7RYG_G_A

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 4Y4O_1H_1A 0.72 0.93 1.67 0.15 Ribosomal protein L6 compare
1YHQ_E_0 4Y4O_1H_1A 0.71 0.93 1.96 0.15 Ribosomal protein L6 compare
4Y4O_1H_1A 6AZ3_E_4 0.72 0.82 1.87 0.06 Ribosomal protein L6 compare
4Y4O_1H_1A 6S0Z_G_A 0.77 0.97 1.91 0.53 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 7K00_g_a 0.82 0.97 1.64 0.54 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 7O7Y_BH_B5 0.58 0.89 2.14 0.1 Ribosomal protein L6 compare
1VQ8_E_0 7RYG_G_A 0.63 0.92 3.83 0.17 Ribosomal protein L6 compare
7K00_g_a 7RYG_G_A 0.88 0.99 2.43 0.71 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6AZ3_E_4 7RYG_G_A 0.69 0.81 2.41 0.15 Ribosomal protein L6 compare
4Y4O_1H_1A 7RYG_G_A 0.75 0.96 2.99 0.49 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6S0Z_G_A 7RYG_G_A 0.88 0.98 1.9 0.59 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
1YHQ_E_0 7RYG_G_A 0.64 0.92 3.91 0.17 Ribosomal protein L6 compare