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All interfaces > All interologs > Interface groups > group121 > 6AZ3_E_2

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_E
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
E:167 [LYS] 2:1332 [G] 4.97 2:1347 [C] 0.0
E:167 [LYS] 2:1333 [C] 2.46 2:1346 [G] 0.0
E:168 [LYS] 2:1341 [A] 4.34 0.0
E:169 [LYS] 2:1338 [C] 4.51 0.0
E:169 [LYS] 2:1340 [G] 3.53 0.0
E:169 [LYS] 2:1341 [A] 3.65 0.0
E:170 [ASP] 2:1338 [C] 3.16 base/AA stacks 0.0
E:170 [ASP] 2:1339 [A] 3.54 4:57 [A] 0.0
E:170 [ASP] 2:1340 [G] 2.97 0.0
E:171 [ILE] 2:1335 [C] 4.74 2:1344 [A] 0.0
E:172 [ARG] 2:1336 [C] 4.64 2:1343 [G] 0.0
E:172 [ARG] 2:1337 [G] 3.01 2:1283 [C] 0.0
E:172 [ARG] 2:1338 [C] 3.3 base/AA stacks 0.0
E:172 [ARG] 2:1339 [A] 3.84 4:57 [A] 0.0
E:173 [LYS] 2:1339 [A] 3.51 4:57 [A] sugar:SC 0.0
E:174 [PHE] 2:1339 [A] 3.91 4:57 [A] 0.0
E:174 [PHE] 2:1340 [G] 3.87 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 6AZ3_E_2 E: 60s ribosomal protein l9, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3S7X3V0 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 6AZ3_E_2 0.85 0.82 2.44 0.5 Ribosomal protein L6 compare
6AZ3_E_2 6S0Z_G_A 0.42 0.82 3.69 0.0 Ribosomal protein L6 compare
6AZ3_E_2 7K00_g_a 0.41 0.83 2.88 0.0 Ribosomal protein L6 compare
6AZ3_E_2 7O7Y_BH_B5 0.98 0.92 0.68 0.56 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA compare
1YHQ_E_0 6AZ3_E_2 0.83 0.82 2.3 0.5 Ribosomal protein L6 compare