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All interfaces > All interologs > Interface groups > group121 > 6AZ3_E_4

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_E
6AZ3_4
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
E:40 [HIS] 4:151 [A] 3.03 4:149 [U] sugar:SC 0.0
E:40 [HIS] 4:152 [G] 3.53 4:138 [C] 0.0
E:41 [LEU] 4:151 [A] 3.38 4:149 [U] 0.0
E:63 [LYS] 4:142 [A] 3.34 4:146 [C] 0.0
E:63 [LYS] 4:143 [C] 4.06 4:145 [C] 0.0
E:64 [ILE] 4:150 [A] 3.86 4:140 [G] 0.0
E:66 [ILE] 4:141 [A] 4.63 4:147 [U] 0.0
E:66 [ILE] 4:142 [A] 4.9 4:146 [C] 0.0
E:67 [ALA] 4:141 [A] 2.83 4:147 [U] sugar:BB 0.0
E:67 [ALA] 4:142 [A] 4.17 4:146 [C] 0.0
E:67 [ALA] 4:150 [A] 3.75 4:140 [G] 0.0
E:68 [CYS] 4:141 [A] 4.96 4:147 [U] 0.0
E:68 [CYS] 4:150 [A] 4.13 4:140 [G] 0.0
E:68 [CYS] 4:151 [A] 3.77 4:149 [U] 0.0
E:70 [ASN] 4:140 [G] 3.9 4:150 [A] 0.0
E:70 [ASN] 4:141 [A] 3.32 4:147 [U] 0.0
E:70 [ASN] 4:142 [A] 3.08 4:146 [C] 0.0
E:71 [THR] 4:140 [G] 3.14 4:150 [A] sugar:SC 0.0
E:71 [THR] 4:141 [A] 3.86 4:147 [U] 0.0
E:71 [THR] 4:150 [A] 2.85 4:140 [G] base:SC 0.0
E:71 [THR] 4:151 [A] 3.46 4:149 [U] 0.0
E:74 [ALA] 4:140 [G] 3.31 4:150 [A] 0.0
E:74 [ALA] 4:141 [A] 3.4 4:147 [U] 0.0
E:75 [HIS] 4:139 [U] 3.7 0.0
E:75 [HIS] 4:140 [G] 4.08 4:150 [A] 0.0
E:75 [HIS] 4:151 [A] 3.08 4:149 [U] 0.0
E:78 [ASN] 4:139 [U] 3.52 0.0
E:78 [ASN] 4:140 [G] 2.89 4:150 [A] 0.0
E:89 [PHE] 4:139 [U] 4.47 0.0
E:96 [ALA] 4:53 [C] 4.13 4:58 [G] 0.0
E:97 [HIS] 4:51 [U] 4.54 4:60 [A] 0.0
E:97 [HIS] 4:52 [A] 3.49 4:59 [G] 0.0
E:97 [HIS] 4:53 [C] 3.83 4:58 [G] 0.0
E:98 [PHE] 4:51 [U] 3.76 4:60 [A] 0.0
E:98 [PHE] 4:52 [A] 3.56 4:59 [G] 0.0
E:115 [LEU] 4:52 [A] 4.2 4:59 [G] 0.0
E:115 [LEU] 4:60 [A] 4.69 4:51 [U] 0.0
E:115 [LEU] 4:61 [A] 4.16 4:49 [A] 0.0
E:116 [GLY] 4:48 [U] 4.16 4:62 [C] 0.0
E:116 [GLY] 4:61 [A] 3.8 4:49 [A] 0.0
E:116 [GLY] 4:62 [C] 4.73 4:48 [U] 0.0
E:117 [GLU] 4:61 [A] 3.64 4:49 [A] 0.0
E:117 [GLU] 4:62 [C] 3.29 4:48 [U] base/AA stacks 0.0
E:118 [LYS] 4:48 [U] 3.34 4:62 [C] sugar:SC 0.0
E:118 [LYS] 4:49 [A] 4.89 4:61 [A] 0.0
E:118 [LYS] 4:62 [C] 2.87 4:48 [U] base:BB 0.0
E:118 [LYS] 4:63 [U] 3.57 4:47 [G] 0.0
E:119 [ARG] 4:62 [C] 2.9 4:48 [U] base:BB, sugar:SC 0.0
E:119 [ARG] 4:63 [U] 4.06 4:47 [G] 0.0
E:150 [LEU] 4:139 [U] 3.46 0.0
E:150 [LEU] 4:140 [G] 4.0 4:150 [A] 0.0
E:151 [GLU] 4:138 [C] 4.36 4:152 [G] 0.0
E:151 [GLU] 4:139 [U] 3.11 0.0
E:151 [GLU] 4:152 [G] 3.81 4:138 [C] base:SC 0.0
E:154 [SER] 4:138 [C] 3.26 4:152 [G] 0.0
E:154 [SER] 4:139 [U] 3.33 0.0
E:155 [ARG] 4:138 [C] 3.9 4:152 [G] 0.0
E:155 [ARG] 4:154 [C] 2.71 4:136 [G] 0.0
E:155 [ARG] 4:155 [A] 3.27 4:135 [C] 0.0
E:158 [ALA] 4:137 [G] 3.61 4:153 [C] 0.0
E:158 [ALA] 4:138 [C] 3.85 4:152 [G] 0.0
E:159 [VAL] 4:154 [C] 3.61 4:136 [G] 0.0
E:162 [GLN] 4:136 [G] 3.28 4:154 [C] base:SC, base:SC, sugar:SC 0.0
E:162 [GLN] 4:137 [G] 3.29 4:153 [C] sugar:SC 0.0
E:162 [GLN] 4:154 [C] 5.0 4:136 [G] 0.0
E:165 [LEU] 4:136 [G] 4.62 4:154 [C] 0.0
E:169 [LYS] 4:52 [A] 4.02 4:59 [G] 0.0
E:169 [LYS] 4:60 [A] 3.23 4:51 [U] base:SC 0.0
E:169 [LYS] 4:61 [A] 4.76 4:49 [A] 0.0
E:173 [LYS] 4:53 [C] 3.17 4:58 [G] 0.0
E:173 [LYS] 4:54 [G] 3.32 0.0
E:174 [PHE] 4:52 [A] 4.1 4:59 [G] 0.0
E:174 [PHE] 4:53 [C] 3.84 4:58 [G] 0.0
E:183 [LYS] 4:139 [U] 3.83 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 6AZ3_E_4 E: 60s ribosomal protein l9, putative, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) A0A3S7X3V0 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_E_4 7O7Y_BH_B5 0.90 0.92 0.54 0.61 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA compare
1VQ8_E_0 6AZ3_E_4 0.84 0.86 1.45 0.45 Ribosomal protein L6 compare
1YHQ_E_0 6AZ3_E_4 0.85 0.86 1.35 0.42 Ribosomal protein L6 compare
6AZ3_E_4 6S0Z_G_A 0.63 0.82 2.0 0.18 Ribosomal protein L6 compare
6AZ3_E_4 7K00_g_a 0.73 0.82 1.97 0.15 Ribosomal protein L6 compare
4Y4O_1H_1A 6AZ3_E_4 0.72 0.82 1.87 0.06 Ribosomal protein L6 compare
6AZ3_E_4 7RYG_G_A 0.69 0.81 2.41 0.15 Ribosomal protein L6 compare