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All interfaces > All interologs > Interface groups > group121 > 6S0Z_G_A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0Z_G
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
G:2 [SER] A:2776 [A] 4.01 A:2780 [A] 93.89
G:3 [ARG] A:1092 [A] 4.27 A:1154 [G] 81.78
G:3 [ARG] A:1093 [C] 3.93 A:2778 [G] 81.78
G:3 [ARG] A:1156 [G] 3.44 A:1087 [C] 81.78
G:3 [ARG] A:1157 [U] 4.09 A:1086 [G] 81.78
G:3 [ARG] A:2776 [A] 3.66 A:2780 [A] 81.78
G:3 [ARG] A:2778 [G] 3.14 A:1093 [C] 81.78
G:4 [VAL] A:2775 [A] 3.98 A:2781 [U] 75.49
G:4 [VAL] A:2776 [A] 4.17 A:2780 [A] 75.49
G:4 [VAL] A:2778 [G] 3.8 A:1093 [C] 75.49
G:4 [VAL] A:2779 [C] 3.97 A:2777 [A] 75.49
G:35 [ARG] A:2786 [G] 4.01 A:2772 [C] 4.11
G:59 [LYS] A:1078 [G] 4.55 A:1165 [C] 57.62
G:59 [LYS] A:1079 [U] 2.87 A:1164 [G] 57.62
G:59 [LYS] A:2776 [A] 4.0 A:2780 [A] 57.62
G:62 [ARG] A:2775 [A] 4.09 A:2781 [U] 49.04
G:62 [ARG] A:2776 [A] 3.52 A:2780 [A] 49.04
G:62 [ARG] A:2777 [A] 3.4 A:2779 [C] 49.04
G:63 [THR] A:2775 [A] 2.73 A:2781 [U] sugar:BB 63.54
G:63 [THR] A:2776 [A] 3.23 A:2780 [A] 63.54
G:63 [THR] A:2784 [A] 4.59 A:2774 [G] 63.54
G:64 [ASN] A:2775 [A] 4.78 A:2781 [U] 43.47
G:64 [ASN] A:2784 [A] 4.13 A:2774 [G] 43.47
G:64 [ASN] A:2785 [A] 4.67 A:2783 [U] 43.47
G:66 [GLY] A:2774 [G] 4.73 A:2784 [A] 90.23
G:66 [GLY] A:2775 [A] 3.73 A:2781 [U] 90.23
G:67 [THR] A:2774 [G] 3.59 A:2784 [A] 83.63
G:67 [THR] A:2775 [A] 3.81 A:2781 [U] 83.63
G:67 [THR] A:2784 [A] 3.16 A:2774 [G] 83.63
G:70 [ALA] A:2774 [G] 3.3 A:2784 [A] 76.59
G:70 [ALA] A:2775 [A] 3.31 A:2781 [U] 76.59
G:71 [LEU] A:2773 [U] 4.35 63.16
G:71 [LEU] A:2785 [A] 4.12 A:2783 [U] 63.16
G:74 [ASN] A:2773 [U] 3.71 91.53
G:74 [ASN] A:2774 [G] 2.98 A:2784 [A] 91.53
G:85 [LYS] A:2773 [U] 4.61 71.65
G:94 [TYR] A:2684 [A] 4.27 A:2691 [G] 85.1
G:108 [GLY] A:2692 [A] 3.67 A:2683 [U] base:BB 98.84
G:108 [GLY] A:2693 [C] 3.22 base:BB 98.84
G:109 [TYR] A:2680 [U] 4.63 A:2694 [C] 56.42
G:109 [TYR] A:2693 [C] 3.45 56.42
G:109 [TYR] A:2694 [C] 3.33 A:2680 [U] 56.42
G:110 [SER] A:2680 [U] 2.42 A:2694 [C] base:SC, sugar:BB, sugar:SC 95.32
G:110 [SER] A:2681 [A] 4.32 95.32
G:110 [SER] A:2693 [C] 3.82 95.32
G:110 [SER] A:2694 [C] 2.67 A:2680 [U] base:BB, base:SC 95.32
G:110 [SER] A:2695 [G] 3.58 A:2679 [U] 95.32
G:111 [HIS] A:2694 [C] 2.71 A:2680 [U] sugar:SC 91.64
G:111 [HIS] A:2695 [G] 3.36 A:2679 [U] 91.64
G:138 [LYS] A:2772 [C] 4.15 A:2786 [G] 84.45
G:138 [LYS] A:2773 [U] 3.62 84.45
G:138 [LYS] A:2774 [G] 2.96 A:2784 [A] 84.45
G:139 [GLU] A:2772 [C] 3.0 A:2786 [G] sugar:BB 72.95
G:139 [GLU] A:2773 [U] 3.8 72.95
G:140 [GLN] A:2772 [C] 4.99 A:2786 [G] 31.6
G:142 [GLY] A:2772 [C] 3.61 A:2786 [G] 79.66
G:143 [ALA] A:2772 [C] 3.46 A:2786 [G] 68.11
G:146 [SER] A:2771 [G] 3.52 A:2787 [C] sugar:SC 85.73
G:146 [SER] A:2772 [C] 4.15 A:2786 [G] 85.73
G:147 [ASN] A:2788 [A] 4.75 A:2770 [U] 35.23
G:152 [ARG] A:2693 [C] 4.12 86.1
G:155 [GLU] A:2558 [A] 4.88 80.08
G:156 [PRO] A:2557 [U] 4.73 75.08
G:157 [TYR] A:2556 [G] 4.47 A:2502 [C] 93.97
G:157 [TYR] A:2557 [U] 3.23 base/AA stacks 93.97
G:157 [TYR] A:2558 [A] 3.37 93.97
G:157 [TYR] A:2559 [G] 4.22 93.97
G:158 [LYS] A:2685 [C] 2.99 A:2690 [G] 89.78
G:158 [LYS] A:2686 [G] 3.43 89.78
G:160 [LYS] A:2684 [A] 2.83 A:2691 [G] sugar:SC 92.64
G:160 [LYS] A:2685 [C] 3.34 A:2690 [G] 92.64
G:172 [LYS] A:2555 [U] 3.67 A:2562 [G] 98.34
G:172 [LYS] A:2556 [G] 4.06 A:2502 [C] 98.34
G:172 [LYS] A:2557 [U] 4.55 98.34
G:174 [GLY] A:2558 [A] 3.3 sugar:BB 79.22

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 6S0Z_G_A G: 50s ribosomal protein l6, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) W8U3X2 Ribosomal protein L6 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 6S0Z_G_A 0.59 0.93 2.63 0.18 Ribosomal protein L6 compare
1YHQ_E_0 6S0Z_G_A 0.60 0.93 2.65 0.18 Ribosomal protein L6 compare
4Y4O_1H_1A 6S0Z_G_A 0.77 0.97 1.91 0.53 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6AZ3_E_2 6S0Z_G_A 0.42 0.82 3.69 0.0 Ribosomal protein L6 compare
6AZ3_E_4 6S0Z_G_A 0.63 0.82 2.0 0.18 Ribosomal protein L6 compare
6S0Z_G_A 7O7Y_BH_B5 0.48 0.89 2.89 0.15 Ribosomal protein L6 compare
6S0Z_G_A 7RYG_G_A 0.88 0.98 1.9 0.59 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6S0Z_G_A 7K00_g_a 0.83 0.97 1.49 0.65 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare