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All interfaces > All interologs > Interface groups > group121 > 7K00_g_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_g
7K00_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
g:2 [SER] a:2748 [A] 4.56 a:2754 [U] 97.29
g:2 [SER] a:2749 [A] 2.79 a:2753 [A] 97.29
g:2 [SER] a:2750 [A] 3.66 a:2752 [C] 97.29
g:2 [SER] a:2751 [G] 2.5 a:1049 [C] 97.29
g:3 [ARG] a:1111 [A] 4.91 a:1047 [G] 81.21
g:3 [ARG] a:1112 [G] 4.4 a:1043 [C] 81.21
g:3 [ARG] a:1113 [U] 4.16 a:1042 [G] 81.21
g:3 [ARG] a:2749 [A] 3.61 a:2753 [A] 81.21
g:3 [ARG] a:2751 [G] 2.95 a:1049 [C] base:SC base/AA stacks 81.21
g:4 [VAL] a:2748 [A] 3.49 a:2754 [U] 80.09
g:4 [VAL] a:2749 [A] 3.41 a:2753 [A] 80.09
g:4 [VAL] a:2751 [G] 3.48 a:1049 [C] 80.09
g:4 [VAL] a:2752 [C] 4.64 a:2750 [A] 80.09
g:5 [ALA] a:2749 [A] 4.84 a:2753 [A] 76.99
g:35 [ARG] a:2758 [A] 3.74 a:2756 [U] 24.5
g:35 [ARG] a:2759 [G] 3.66 a:2745 [C] sugar:SC 24.5
g:38 [ASN] a:2758 [A] 3.36 a:2756 [U] sugar:SC 41.62
g:62 [TRP] a:2748 [A] 3.37 a:2754 [U] sugar:BB 56.73
g:62 [TRP] a:2749 [A] 3.86 a:2753 [A] 56.73
g:63 [ALA] a:2748 [A] 2.64 a:2754 [U] sugar:BB 63.4
g:63 [ALA] a:2749 [A] 3.5 a:2753 [A] 63.4
g:63 [ALA] a:2757 [A] 4.7 a:2747 [G] 63.4
g:64 [GLN] a:2748 [A] 4.61 a:2754 [U] 43.49
g:64 [GLN] a:2757 [A] 3.14 a:2747 [G] base:SC 43.49
g:64 [GLN] a:2758 [A] 3.24 a:2756 [U] sugar:SC 43.49
g:66 [GLY] a:2747 [G] 4.83 a:2757 [A] 92.95
g:66 [GLY] a:2748 [A] 3.31 a:2754 [U] 92.95
g:67 [THR] a:2747 [G] 2.8 a:2757 [A] sugar:SC 82.37
g:67 [THR] a:2748 [A] 3.51 a:2754 [U] 82.37
g:67 [THR] a:2757 [A] 3.69 a:2747 [G] 82.37
g:67 [THR] a:2758 [A] 4.21 a:2756 [U] 82.37
g:70 [ALA] a:2747 [G] 3.19 a:2757 [A] 75.86
g:70 [ALA] a:2748 [A] 3.07 a:2754 [U] 75.86
g:71 [LEU] a:2746 [U] 3.73 66.37
g:71 [LEU] a:2747 [G] 4.41 a:2757 [A] 66.37
g:71 [LEU] a:2758 [A] 3.64 a:2756 [U] 66.37
g:74 [SER] a:2747 [G] 4.45 a:2757 [A] 93.32
g:85 [LYS] a:2746 [U] 3.89 65.14
g:92 [VAL] a:2658 [C] 4.76 a:2663 [G] 86.72
g:94 [TYR] a:2657 [A] 4.98 a:2664 [G] 84.42
g:108 [GLY] a:2665 [A] 4.62 a:2656 [U] 98.97
g:108 [GLY] a:2666 [C] 3.23 a:2654 [A] base:BB 98.97
g:109 [PHE] a:2666 [C] 3.73 a:2654 [A] 60.65
g:109 [PHE] a:2667 [C] 3.77 a:2653 [U] 60.65
g:110 [SER] a:2653 [U] 3.04 a:2667 [C] 95.21
g:110 [SER] a:2666 [C] 4.46 a:2654 [A] 95.21
g:110 [SER] a:2667 [C] 2.69 a:2653 [U] base:BB, base:SC, base:SC 95.21
g:110 [SER] a:2668 [G] 3.39 a:2652 [C] 95.21
g:111 [HIS] a:2667 [C] 2.59 a:2653 [U] sugar:SC 91.03
g:111 [HIS] a:2668 [G] 3.38 a:2652 [C] 91.03
g:138 [LYS] a:2745 [C] 4.56 a:2759 [G] 85.83
g:138 [LYS] a:2746 [U] 3.57 85.83
g:138 [LYS] a:2747 [G] 2.87 a:2757 [A] 85.83
g:139 [GLN] a:2744 [G] 4.65 a:2760 [C] 74.21
g:139 [GLN] a:2745 [C] 2.8 a:2759 [G] base:SC, sugar:BB, sugar:SC 74.21
g:139 [GLN] a:2746 [U] 3.19 74.21
g:139 [GLN] a:2759 [G] 3.41 a:2745 [C] 74.21
g:139 [GLN] a:2760 [C] 3.63 a:2744 [G] 74.21
g:142 [GLY] a:2745 [C] 3.33 a:2759 [G] 78.16
g:142 [GLY] a:2746 [U] 4.15 78.16
g:143 [GLN] a:2744 [G] 2.73 a:2760 [C] base:SC 66.14
g:143 [GLN] a:2745 [C] 3.19 a:2759 [G] 66.14
g:143 [GLN] a:2760 [C] 3.98 a:2744 [G] 66.14
g:143 [GLN] a:2761 [A] 3.93 a:2743 [U] 66.14
g:146 [ALA] a:2744 [G] 3.45 a:2760 [C] 84.89
g:146 [ALA] a:2745 [C] 3.97 a:2759 [G] 84.89
g:147 [ASP] a:2761 [A] 4.93 a:2743 [U] 29.15
g:149 [ARG] a:2744 [G] 4.76 a:2760 [C] 79.18
g:152 [ARG] a:2666 [C] 4.06 a:2654 [A] 84.75
g:153 [ARG] a:2526 [G] 4.89 a:2537 [U] 52.61
g:153 [ARG] a:2743 [U] 4.92 a:2761 [A] 52.61
g:155 [GLU] a:2658 [C] 4.79 a:2663 [G] 76.95
g:156 [PRO] a:2530 [A] 3.47 75.19
g:157 [TYR] a:2529 [G] 4.49 a:2475 [C] 96.24
g:157 [TYR] a:2530 [A] 2.99 base/AA stacks 96.24
g:157 [TYR] a:2531 [A] 3.43 a:2662 [A] 96.24
g:157 [TYR] a:2532 [G] 4.61 96.24
g:158 [LYS] a:2658 [C] 3.3 a:2663 [G] 87.12
g:158 [LYS] a:2659 [G] 3.71 87.12
g:160 [LYS] a:2657 [A] 3.9 a:2664 [G] 92.8
g:160 [LYS] a:2658 [C] 3.1 a:2663 [G] 92.8
g:164 [TYR] a:2744 [G] 4.91 a:2760 [C] 57.73
g:164 [TYR] a:2745 [C] 3.97 a:2759 [G] 57.73
g:172 [LYS] a:2528 [U] 3.82 a:2535 [G] 94.35
g:172 [LYS] a:2529 [G] 3.5 a:2475 [C] 94.35
g:172 [LYS] a:2530 [A] 2.92 base:SC 94.35
g:174 [ALA] a:2531 [A] 3.65 a:2662 [A] 77.07
g:175 [LYS] a:2529 [G] 3.38 a:2475 [C] 96.37
g:175 [LYS] a:2530 [A] 3.52 96.37
g:175 [LYS] a:2531 [A] 3.15 a:2662 [A] 96.37
g:176 [LYS] a:2473 [U] 4.11 72.14

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 7K00_g_a g: 50s ribosomal protein l6, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) P0AG55 Ribosomal protein L6 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 7K00_g_a 0.71 0.9 2.26 0.2 Ribosomal protein L6 compare
7K00_g_a 7O7Y_BH_B5 0.58 0.9 2.4 0.1 Ribosomal protein L6 compare
6AZ3_E_4 7K00_g_a 0.73 0.82 1.97 0.15 Ribosomal protein L6 compare
6AZ3_E_2 7K00_g_a 0.41 0.83 2.88 0.0 Ribosomal protein L6 compare
1YHQ_E_0 7K00_g_a 0.71 0.91 2.33 0.2 Ribosomal protein L6 compare
7K00_g_a 7RYG_G_A 0.88 0.99 2.43 0.71 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
4Y4O_1H_1A 7K00_g_a 0.82 0.97 1.64 0.54 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6S0Z_G_A 7K00_g_a 0.83 0.97 1.49 0.65 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare