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All interfaces > All interologs > Interface groups > group121 > 7O7Y_BH_B5

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BH
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BH:1 [MET] B5:1865 [C] 4.28 B5:1997 [G] 87.04
BH:1 [MET] B5:1889 [U] 3.67 B5:1972 [A] 87.04
BH:1 [MET] B5:1890 [G] 3.52 B5:1971 [U] 87.04
BH:21 [LYS] B5:4601 [G] 3.72 B5:4520 [C] 45.85
BH:21 [LYS] B5:4602 [G] 3.02 B5:4519 [C] 45.85
BH:22 [GLY] B5:4512 [G] 3.51 56.1
BH:23 [ARG] B5:4510 [U] 3.34 62.15
BH:23 [ARG] B5:4511 [A] 3.12 sugar:SC 62.15
BH:23 [ARG] B5:4512 [G] 2.4 62.15
BH:36 [ARG] B5:4435 [PSU] 4.64 71.91
BH:36 [ARG] B5:4447 [A] 4.24 B5:4445 [U] 71.91
BH:36 [ARG] B5:4448 [G] 4.07 B5:4434 [C] 71.91
BH:39 [ASN] B5:4510 [U] 4.58 63.94
BH:39 [ASN] B5:4512 [G] 4.88 63.94
BH:40 [HIS] B5:4447 [A] 2.44 B5:4445 [U] sugar:SC 56.9
BH:40 [HIS] B5:4448 [G] 3.48 B5:4434 [C] 56.9
BH:41 [ILE] B5:4447 [A] 3.5 B5:4445 [U] 32.45
BH:41 [ILE] B5:4511 [A] 4.15 32.45
BH:42 [ASN] B5:4511 [A] 3.6 12.63
BH:43 [VAL] B5:4511 [A] 2.74 sugar:BB 64.16
BH:43 [VAL] B5:4512 [G] 4.75 64.16
BH:44 [GLU] B5:4511 [A] 3.29 30.54
BH:49 [GLY] B5:753 [G] 3.84 B5:802 [C] 38.68
BH:49 [GLY] B5:754 [G] 3.52 B5:801 [C] 38.68
BH:50 [LYS] B5:753 [G] 4.45 B5:802 [C] 56.51
BH:50 [LYS] B5:754 [G] 2.62 B5:801 [C] 56.51
BH:50 [LYS] B5:755 [G] 3.31 B5:800 [U] 56.51
BH:51 [LYS] B5:754 [G] 3.58 B5:801 [C] 32.42
BH:51 [LYS] B5:796 [C] 4.57 32.42
BH:52 [LYS] B5:752 [G] 4.05 B5:803 [C] 51.79
BH:52 [LYS] B5:753 [G] 2.87 B5:802 [C] 51.79
BH:52 [LYS] B5:754 [G] 4.46 B5:801 [C] 51.79
BH:54 [ARG] B5:752 [G] 4.6 B5:803 [C] 45.34
BH:54 [ARG] B5:753 [G] 3.35 B5:802 [C] 45.34
BH:58 [ASP] B5:4511 [A] 3.27 0.0
BH:59 [LYS] B5:4511 [A] 3.44 47.83
BH:60 [TRP] B5:4511 [A] 2.65 base:BB, base:BB 19.97
BH:61 [TRP] B5:4511 [A] 4.87 39.55
BH:64 [ARG] B5:1888 [U] 2.72 B5:1973 [G] 78.5
BH:64 [ARG] B5:1889 [U] 3.38 B5:1972 [A] 78.5
BH:64 [ARG] B5:4438 [A] 3.16 B5:4442 [C] 78.5
BH:64 [ARG] B5:4439 [C] 2.71 B5:1886 [U] 78.5
BH:65 [LYS] B5:1887 [G] 3.51 B5:1974 [C] 68.4
BH:65 [LYS] B5:1888 [U] 3.39 B5:1973 [G] 68.4
BH:65 [LYS] B5:4446 [A] 3.73 B5:4436 [G] 68.4
BH:67 [LEU] B5:4437 [A] 4.99 B5:4443 [U] 35.35
BH:68 [ALA] B5:4437 [A] 2.33 B5:4443 [U] sugar:BB 80.89
BH:68 [ALA] B5:4438 [A] 3.41 B5:4442 [C] 80.89
BH:68 [ALA] B5:4446 [A] 3.8 B5:4436 [G] 80.89
BH:69 [THR] B5:4437 [A] 4.46 B5:4443 [U] 29.56
BH:69 [THR] B5:4446 [A] 3.82 B5:4436 [G] 29.56
BH:69 [THR] B5:4447 [A] 4.44 B5:4445 [U] 29.56
BH:71 [ARG] B5:4436 [G] 4.92 B5:4446 [A] 60.72
BH:71 [ARG] B5:4437 [A] 3.19 B5:4443 [U] 60.72
BH:71 [ARG] B5:4438 [A] 3.8 B5:4442 [C] 60.72
BH:71 [ARG] B5:4440 [G] 3.23 B5:1902 [C] sugar:SC 60.72
BH:71 [ARG] B5:4441 [C] 2.81 60.72
BH:72 [THR] B5:4436 [G] 3.06 B5:4446 [A] sugar:SC 93.52
BH:72 [THR] B5:4437 [A] 3.27 B5:4443 [U] 93.52
BH:72 [THR] B5:4446 [A] 2.86 B5:4436 [G] base:SC 93.52
BH:72 [THR] B5:4447 [A] 3.51 B5:4445 [U] 93.52
BH:75 [SER] B5:4436 [G] 3.32 B5:4446 [A] 83.3
BH:75 [SER] B5:4437 [A] 2.55 B5:4443 [U] 83.3
BH:76 [HIS] B5:4435 [PSU] 3.46 79.5
BH:76 [HIS] B5:4436 [G] 3.74 B5:4446 [A] 79.5
BH:76 [HIS] B5:4447 [A] 2.82 B5:4445 [U] base:SC 79.5
BH:79 [ASN] B5:4435 [PSU] 3.61 96.88
BH:79 [ASN] B5:4436 [G] 2.8 B5:4446 [A] 96.88
BH:90 [TYR] B5:4434 [C] 4.84 B5:4448 [G] 70.54
BH:90 [TYR] B5:4435 [PSU] 3.15 70.54
BH:97 [ALA] B5:4349 [C] 4.12 B5:4354 [G] 74.98
BH:98 [HIS] B5:4347 [U] 4.74 B5:4356 [A] 99.0
BH:98 [HIS] B5:4348 [A] 3.52 B5:4355 [G] 99.0
BH:98 [HIS] B5:4349 [C] 3.69 B5:4354 [G] 99.0
BH:99 [PHE] B5:4347 [U] 3.8 B5:4356 [A] 98.53
BH:99 [PHE] B5:4348 [A] 3.44 B5:4355 [G] 98.53
BH:118 [LEU] B5:4348 [A] 4.5 B5:4355 [G] 66.15
BH:118 [LEU] B5:4356 [A] 4.77 B5:4347 [U] 66.15
BH:118 [LEU] B5:4357 [A] 3.88 B5:4345 [A] 66.15
BH:119 [GLY] B5:4344 [C] 4.39 B5:4358 [C] 98.92
BH:119 [GLY] B5:4357 [A] 3.93 B5:4345 [A] 98.92
BH:120 [GLU] B5:4357 [A] 3.52 B5:4345 [A] 81.0
BH:120 [GLU] B5:4358 [C] 3.19 B5:4344 [C] base/AA stacks 81.0
BH:121 [LYS] B5:4343 [U] 3.61 B5:4359 [C] sugar:SC 91.25
BH:121 [LYS] B5:4344 [C] 3.38 B5:4358 [C] 91.25
BH:121 [LYS] B5:4358 [C] 3.12 B5:4344 [C] base:BB, base:BB 91.25
BH:121 [LYS] B5:4359 [C] 3.35 B5:4343 [U] 91.25
BH:122 [TYR] B5:4358 [C] 2.86 B5:4344 [C] base:BB 32.14
BH:122 [TYR] B5:4359 [C] 3.76 B5:4343 [U] 32.14
BH:129 [ARG] B5:4450 [C] 3.0 B5:4432 [G] 21.68
BH:129 [ARG] B5:4451 [A] 4.25 B5:4431 [U] 21.68
BH:151 [ILE] B5:4434 [C] 4.98 B5:4448 [G] 57.34
BH:151 [ILE] B5:4435 [PSU] 3.84 57.34
BH:151 [ILE] B5:4436 [G] 4.17 B5:4446 [A] 57.34
BH:152 [GLU] B5:4434 [C] 3.85 B5:4448 [G] 73.46
BH:152 [GLU] B5:4435 [PSU] 3.19 sugar:SC 73.46
BH:152 [GLU] B5:4448 [G] 4.15 B5:4434 [C] 73.46
BH:152 [GLU] B5:4449 [U] 4.95 B5:4433 [A] 73.46
BH:155 [SER] B5:4434 [C] 2.44 B5:4448 [G] sugar:SC 85.59
BH:155 [SER] B5:4435 [PSU] 3.47 85.59
BH:156 [ASN] B5:4434 [C] 3.58 B5:4448 [G] 83.21
BH:156 [ASN] B5:4450 [C] 3.46 B5:4432 [G] 83.21
BH:159 [ALA] B5:4433 [A] 3.48 B5:4449 [U] 83.31
BH:159 [ALA] B5:4434 [C] 4.17 B5:4448 [G] 83.31
BH:160 [LEU] B5:4450 [C] 3.67 B5:4432 [G] 77.07
BH:160 [LEU] B5:4451 [A] 4.41 B5:4431 [U] 77.07
BH:163 [GLN] B5:4432 [G] 2.92 B5:4450 [C] base:SC, base:SC, sugar:SC 60.11
BH:163 [GLN] B5:4433 [A] 3.14 B5:4449 [U] sugar:SC 60.11
BH:163 [GLN] B5:4450 [C] 4.79 B5:4432 [G] 60.11
BH:163 [GLN] B5:4451 [A] 4.66 B5:4431 [U] 60.11
BH:168 [LYS] B5:4217 [PSU] 3.31 B5:4230 [A] 55.19
BH:169 [ASN] B5:4224 [G] 4.72 53.89
BH:169 [ASN] B5:4225 [A] 4.04 53.89
BH:170 [LYS] B5:4222 [C] 4.85 68.35
BH:170 [LYS] B5:4224 [G] 3.53 68.35
BH:170 [LYS] B5:4225 [A] 3.1 68.35
BH:170 [LYS] B5:4348 [A] 3.88 B5:4355 [G] 68.35
BH:170 [LYS] B5:4356 [A] 3.07 B5:4347 [U] base:SC 68.35
BH:170 [LYS] B5:4357 [A] 4.41 B5:4345 [A] 68.35
BH:171 [ASP] B5:4222 [C] 3.4 base/AA stacks 98.72
BH:171 [ASP] B5:4223 [A] 3.72 B5:4353 [A] 98.72
BH:171 [ASP] B5:4224 [G] 2.91 98.72
BH:172 [ILE] B5:4219 [A] 4.81 B5:4228 [U] 46.27
BH:172 [ILE] B5:4222 [C] 4.83 46.27
BH:173 [ARG] B5:4220 [A] 4.57 B5:4227 [U] 98.74
BH:173 [ARG] B5:4221 [G] 2.93 B5:4167 [C] 98.74
BH:173 [ARG] B5:4222 [C] 3.06 base/AA stacks 98.74
BH:173 [ARG] B5:4223 [A] 3.9 B5:4353 [A] 98.74
BH:174 [LYS] B5:4223 [A] 3.2 B5:4353 [A] sugar:SC 70.79
BH:174 [LYS] B5:4349 [C] 2.92 B5:4354 [G] 70.79
BH:174 [LYS] B5:4350 [G] 3.07 70.79
BH:175 [PHE] B5:4223 [A] 3.51 B5:4353 [A] 91.04
BH:175 [PHE] B5:4224 [G] 3.63 91.04
BH:175 [PHE] B5:4348 [A] 4.29 B5:4355 [G] 91.04
BH:175 [PHE] B5:4349 [C] 3.93 B5:4354 [G] 91.04
BH:184 [LYS] B5:4435 [PSU] 3.23 78.94

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 7O7Y_BH_B5 BH: 60s ribosomal protein l9, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SWI6 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_E_0 7O7Y_BH_B5 0.81 0.94 2.38 0.55 Ribosomal protein L6 compare
7K00_g_a 7O7Y_BH_B5 0.58 0.9 2.4 0.1 Ribosomal protein L6 compare
4Y4O_1H_1A 7O7Y_BH_B5 0.58 0.89 2.14 0.1 Ribosomal protein L6 compare
6S0Z_G_A 7O7Y_BH_B5 0.48 0.89 2.89 0.15 Ribosomal protein L6 compare
1YHQ_E_0 7O7Y_BH_B5 0.82 0.94 2.31 0.54 Ribosomal protein L6 compare
6AZ3_E_4 7O7Y_BH_B5 0.90 0.92 0.54 0.61 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA compare
6AZ3_E_2 7O7Y_BH_B5 0.98 0.92 0.68 0.56 Ribosomal protein L6 Eukaryotic large subunit ribosomal RNA compare