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All interfaces > All interologs > Interface groups > group121 > 7RYG_G_A

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

7RYG_G
7RYG_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
G:2 [SER] A:2745 [A] 3.91 A:2749 [A] 97.8
G:2 [SER] A:2746 [A] 4.93 A:2748 [C] 97.8
G:3 [ARG] A:1046 [C] 4.53 A:1107 [G] 82.92
G:3 [ARG] A:1109 [G] 4.2 A:1040 [C] 82.92
G:3 [ARG] A:1110 [U] 4.21 A:1039 [G] 82.92
G:3 [ARG] A:2745 [A] 4.05 A:2749 [A] 82.92
G:3 [ARG] A:2746 [A] 4.84 A:2748 [C] 82.92
G:3 [ARG] A:2747 [G] 2.45 base/AA stacks 82.92
G:4 [VAL] A:2744 [A] 3.06 A:2750 [U] 77.36
G:4 [VAL] A:2745 [A] 3.27 A:2749 [A] 77.36
G:4 [VAL] A:2747 [G] 3.76 77.36
G:4 [VAL] A:2748 [C] 4.67 A:2746 [A] 77.36
G:35 [PHE] A:2754 [A] 4.7 A:2752 [U] 3.14
G:38 [HIS] A:2754 [A] 4.01 A:2752 [U] 51.68
G:59 [LYS] A:1032 [U] 4.66 A:1117 [G] 61.29
G:62 [TRP] A:2744 [A] 4.97 A:2750 [U] 57.48
G:63 [MET] A:2744 [A] 3.24 A:2750 [U] sugar:BB 60.92
G:63 [MET] A:2745 [A] 3.75 A:2749 [A] 60.92
G:63 [MET] A:2753 [A] 3.03 A:2743 [G] 60.92
G:64 [GLN] A:2753 [A] 3.47 A:2743 [G] 37.19
G:64 [GLN] A:2754 [A] 3.44 A:2752 [U] sugar:SC 37.19
G:66 [GLY] A:2744 [A] 4.21 A:2750 [U] 94.32
G:67 [THR] A:2743 [G] 3.45 A:2753 [A] 84.84
G:67 [THR] A:2744 [A] 3.42 A:2750 [U] 84.84
G:67 [THR] A:2753 [A] 3.22 A:2743 [G] 84.84
G:70 [ALA] A:2743 [G] 3.22 A:2753 [A] 81.17
G:70 [ALA] A:2744 [A] 3.02 A:2750 [U] 81.17
G:71 [VAL] A:2743 [G] 4.73 A:2753 [A] 72.64
G:71 [VAL] A:2754 [A] 4.68 A:2752 [U] 72.64
G:74 [ASN] A:2742 [U] 4.12 92.91
G:74 [ASN] A:2743 [G] 3.13 A:2753 [A] 92.91
G:85 [ARG] A:2742 [U] 4.31 75.14
G:92 [VAL] A:2653 [A] 4.34 A:2660 [G] 88.51
G:92 [VAL] A:2654 [C] 3.94 A:2659 [G] 88.51
G:108 [GLY] A:2661 [A] 4.53 A:2652 [U] 98.92
G:108 [GLY] A:2662 [C] 4.48 98.92
G:109 [TYR] A:2662 [C] 3.11 56.68
G:109 [TYR] A:2663 [C] 4.37 A:2649 [U] 56.68
G:110 [SER] A:2649 [U] 3.55 A:2663 [C] 97.4
G:110 [SER] A:2662 [C] 4.23 97.4
G:110 [SER] A:2663 [C] 2.69 A:2649 [U] base:SC 97.4
G:110 [SER] A:2664 [A] 3.67 A:2648 [C] 97.4
G:111 [HIS] A:2663 [C] 3.47 A:2649 [U] 91.26
G:111 [HIS] A:2664 [A] 4.19 A:2648 [C] 91.26
G:138 [LYS] A:2741 [C] 4.72 A:2755 [G] 87.55
G:138 [LYS] A:2742 [U] 3.09 87.55
G:138 [LYS] A:2743 [G] 3.01 A:2753 [A] 87.55
G:139 [GLN] A:2740 [G] 4.9 A:2756 [C] 69.5
G:139 [GLN] A:2741 [C] 2.79 A:2755 [G] base:SC, sugar:BB 69.5
G:139 [GLN] A:2742 [U] 3.43 69.5
G:139 [GLN] A:2755 [G] 3.27 A:2741 [C] base:SC 69.5
G:139 [GLN] A:2756 [C] 4.7 A:2740 [G] 69.5
G:140 [LEU] A:2741 [C] 4.96 A:2755 [G] 36.89
G:142 [GLY] A:2741 [C] 3.78 A:2755 [G] 81.74
G:142 [GLY] A:2742 [U] 4.51 81.74
G:143 [GLN] A:2740 [G] 3.4 A:2756 [C] 66.18
G:143 [GLN] A:2741 [C] 3.32 A:2755 [G] 66.18
G:143 [GLN] A:2757 [G] 3.45 A:2739 [C] sugar:SC 66.18
G:146 [ALA] A:2740 [G] 3.96 A:2756 [C] 84.38
G:146 [ALA] A:2741 [C] 4.35 A:2755 [G] 84.38
G:147 [GLU] A:2757 [G] 4.27 A:2739 [C] 46.08
G:152 [ARG] A:2662 [C] 4.43 85.39
G:156 [PRO] A:2526 [A] 4.48 76.77
G:157 [TYR] A:2526 [A] 3.4 93.85
G:157 [TYR] A:2527 [A] 3.38 93.85
G:157 [TYR] A:2528 [G] 4.8 93.85
G:158 [LYS] A:2654 [C] 4.09 A:2659 [G] 89.12
G:158 [LYS] A:2655 [G] 2.86 89.12
G:160 [LYS] A:2653 [A] 3.54 A:2660 [G] sugar:SC 92.8
G:160 [LYS] A:2654 [C] 4.53 A:2659 [G] 92.8
G:172 [LYS] A:2524 [U] 3.87 A:2531 [G] 98.37
G:172 [LYS] A:2525 [G] 3.65 98.37
G:172 [LYS] A:2526 [A] 2.91 base:SC 98.37
G:174 [ALA] A:2527 [A] 3.07 80.03
G:175 [LYS] A:2527 [A] 4.04 95.65

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group121 7RYG_G_A G: 50s ribosomal protein l6, Acinetobacter baumannii (strain ab0057) (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) B7IA24 Ribosomal protein L6 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_E_0 7RYG_G_A 0.64 0.92 3.91 0.17 Ribosomal protein L6 compare
1VQ8_E_0 7RYG_G_A 0.63 0.92 3.83 0.17 Ribosomal protein L6 compare
4Y4O_1H_1A 7RYG_G_A 0.75 0.96 2.99 0.49 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
7K00_g_a 7RYG_G_A 0.88 0.99 2.43 0.71 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare
6AZ3_E_4 7RYG_G_A 0.69 0.81 2.41 0.15 Ribosomal protein L6 compare
6S0Z_G_A 7RYG_G_A 0.88 0.98 1.9 0.59 Ribosomal protein L6 Bacterial large subunit ribosomal RNA compare