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All interfaces > All interologs > Interface groups > group122 > 1VQ8_N_0

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_N
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
N:4 [PRO] 0:961 [A] 3.85 34.37
N:4 [PRO] 0:1010 [C] 3.38 34.37
N:5 [ARG] 0:961 [A] 4.29 45.34
N:5 [ARG] 0:962 [C] 2.96 45.34
N:5 [ARG] 0:1009 [U] 4.86 0:957 [A] 45.34
N:5 [ARG] 0:1010 [C] 3.02 45.34
N:5 [ARG] 0:2354 [A] 4.98 45.34
N:6 [TYR] 0:2353 [A] 2.82 37.94
N:6 [TYR] 0:2354 [A] 4.99 37.94
N:7 [LYS] 0:2353 [A] 2.74 sugar:BB, sugar:BB 49.87
N:8 [VAL] 0:2353 [A] 4.7 66.18
N:9 [PRO] 0:2353 [A] 3.42 28.26
N:12 [ARG] 0:2368 [A] 3.99 base:BB 98.75
N:13 [ARG] 0:2353 [A] 4.48 86.06
N:13 [ARG] 0:2368 [A] 2.98 base/AA stacks 86.06
N:16 [ALA] 0:2368 [A] 3.49 58.84
N:17 [ARG] 0:2368 [A] 3.67 65.31
N:18 [THR] 0:2368 [A] 2.84 base:BB 99.0
N:19 [ASP] 0:2368 [A] 3.61 base/AA stacks 88.67
N:19 [ASP] 0:2369 [A] 4.61 0:2330 [U] 88.67
N:20 [TYR] 0:2368 [A] 4.62 98.68
N:21 [HIS] 0:2367 [A] 4.99 54.02
N:21 [HIS] 0:2368 [A] 4.72 54.02
N:21 [HIS] 0:2369 [A] 3.49 0:2330 [U] 54.02
N:21 [HIS] 0:2370 [A] 4.89 54.02
N:22 [GLN] 0:2413 [A] 3.81 62.2
N:22 [GLN] 0:2414 [A] 4.15 62.2
N:22 [GLN] 0:2415 [A] 3.66 0:2412 [G] 62.2
N:25 [ARG] 0:2414 [A] 4.86 44.09
N:25 [ARG] 0:2415 [A] 2.97 0:2412 [G] base:SC, sugar:BB 44.09
N:25 [ARG] 0:2416 [G] 3.0 0:2411 [C] 44.09
N:26 [LEU] 0:2414 [A] 4.59 73.88
N:26 [LEU] 0:2415 [A] 2.93 0:2412 [G] sugar:BB 73.88
N:27 [LEU] 0:2415 [A] 4.83 0:2412 [G] 78.66
N:28 [LYS] 0:2415 [A] 4.65 0:2412 [G] 60.53
N:28 [LYS] 0:2416 [G] 3.64 0:2411 [C] 60.53
N:28 [LYS] 0:2417 [C] 2.75 0:2410 [G] 60.53
N:29 [SER] 0:2415 [A] 3.13 0:2412 [G] 90.63
N:29 [SER] 0:2416 [G] 3.61 0:2411 [C] 90.63
N:101 [VAL] 0:2414 [A] 4.59 83.42
N:101 [VAL] 0:2415 [A] 3.87 0:2412 [G] 83.42
N:102 [LEU] 0:2413 [A] 3.72 68.7
N:102 [LEU] 0:2414 [A] 4.67 68.7
N:104 [ILE] 0:2413 [A] 3.64 65.51
N:106 [LEU] 0:2368 [A] 3.74 53.34
N:108 [SER] 0:2328 [U] 4.21 0:2372 [A] 47.85
N:109 [PRO] 0:2327 [A] 4.97 0:2373 [U] 54.14
N:109 [PRO] 0:2328 [U] 4.72 0:2372 [A] 54.14
N:109 [PRO] 0:2413 [A] 3.13 54.14
N:116 [PHE] 0:2413 [A] 3.69 66.14
N:130 [PRO] 0:2414 [A] 3.51 68.69
N:130 [PRO] 0:2415 [A] 4.37 0:2412 [G] 68.69
N:131 [HIS] 0:2413 [A] 3.81 42.08
N:131 [HIS] 0:2414 [A] 3.9 42.08
N:132 [ASN] 0:2413 [A] 3.13 61.88
N:132 [ASN] 0:2414 [A] 3.26 61.88
N:135 [VAL] 0:2413 [A] 3.35 56.58

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group122 1VQ8_N_0 N: 50s ribosomal protein l18p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14123 Ribonuclease H-like Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_0 6S0Z_M_A 0.30 0.91 3.95 0.14 Ribonuclease H-like compare
1VQ8_N_0 7RYG_N_A 0.17 0.92 5.13 0.05 Ribonuclease H-like compare
1VQ8_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 6AZ3_O_2 0.80 0.79 1.53 0.42 Ribonuclease H-like compare
1VQ8_N_0 7O7Y_BD_B5 0.71 0.94 3.15 0.42 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare
1VQ8_N_0 1YHQ_N_0 1.00 1.0 0.17 1.0 Ribonuclease H-like Archaeal large subunit ribosomal RNA compare