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All interfaces > All interologs > Interface groups > group122 > 1VQ8_N_0 vs 1YHQ_N_0

Interface analysis


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Common contacts -

1VQ8_N
1VQ8_0
1YHQ_N
1YHQ_0
Conserved?
N:4 [PRO] 0:961 [A] N:4 [PRO] 0:961 [A] ✔
N:4 [PRO] 0:1010 [C] N:4 [PRO] 0:1010 [C] ✔
N:20 [TYR] 0:2368 [A] N:20 [TYR] 0:2368 [A] ✔
N:18 [THR] 0:2368 [A] N:18 [THR] 0:2368 [A] ✔
N:8 [VAL] 0:2353 [A] N:8 [VAL] 0:2353 [A] ✔
N:102 [LEU] 0:2413 [A] N:102 [LEU] 0:2413 [A] ✔
N:102 [LEU] 0:2414 [A] N:102 [LEU] 0:2414 [A] ✔
N:7 [LYS] 0:2353 [A] N:7 [LYS] 0:2353 [A] ✔
N:22 [GLN] 0:2413 [A] N:22 [GLN] 0:2413 [A] ✔
N:22 [GLN] 0:2414 [A] N:22 [GLN] 0:2414 [A] ✔
N:22 [GLN] 0:2415 [A] N:22 [GLN] 0:2415 [A] ✔
N:101 [VAL] 0:2414 [A] N:101 [VAL] 0:2414 [A] ✔
N:101 [VAL] 0:2415 [A] N:101 [VAL] 0:2415 [A] ✔
N:108 [SER] 0:2328 [U] N:108 [SER] 0:2328 [U] ✔
N:6 [TYR] 0:2353 [A] N:6 [TYR] 0:2353 [A] ✔
N:6 [TYR] 0:2354 [A] N:6 [TYR] 0:2354 [A] ✔
N:135 [VAL] 0:2413 [A] N:135 [VAL] 0:2413 [A] ✔
N:5 [ARG] 0:961 [A] N:5 [ARG] 0:961 [A] ✔
N:5 [ARG] 0:962 [C] N:5 [ARG] 0:962 [C] ✔
N:5 [ARG] 0:1009 [U] N:5 [ARG] 0:1009 [U] ✔
N:5 [ARG] 0:1010 [C] N:5 [ARG] 0:1010 [C] ✔
N:29 [SER] 0:2415 [A] N:29 [SER] 0:2415 [A] ✔
N:29 [SER] 0:2416 [G] N:29 [SER] 0:2416 [G] ✔
N:13 [ARG] 0:2353 [A] N:13 [ARG] 0:2353 [A] ✔
N:13 [ARG] 0:2368 [A] N:13 [ARG] 0:2368 [A] ✔
N:104 [ILE] 0:2413 [A] N:104 [ILE] 0:2413 [A] ✔
N:132 [ASN] 0:2413 [A] N:132 [ASN] 0:2413 [A] ✔
N:132 [ASN] 0:2414 [A] N:132 [ASN] 0:2414 [A] ✔
N:106 [LEU] 0:2368 [A] N:106 [LEU] 0:2368 [A] ✔
N:19 [ASP] 0:2368 [A] N:19 [ASP] 0:2368 [A] ✔
N:19 [ASP] 0:2369 [A] N:19 [ASP] 0:2369 [A] ✔
N:21 [HIS] 0:2367 [A] N:21 [HIS] 0:2367 [A] ✔
N:21 [HIS] 0:2368 [A] N:21 [HIS] 0:2368 [A] ✔
N:21 [HIS] 0:2369 [A] N:21 [HIS] 0:2369 [A] ✔
N:21 [HIS] 0:2370 [A] N:21 [HIS] 0:2370 [A] ✔
N:27 [LEU] 0:2415 [A] N:27 [LEU] 0:2415 [A] ✔
N:25 [ARG] 0:2414 [A] N:25 [ARG] 0:2414 [A] ✔
N:25 [ARG] 0:2415 [A] N:25 [ARG] 0:2415 [A] ✔
N:25 [ARG] 0:2416 [G] N:25 [ARG] 0:2416 [G] ✔
N:17 [ARG] 0:2368 [A] N:17 [ARG] 0:2368 [A] ✔
N:131 [HIS] 0:2413 [A] N:131 [HIS] 0:2413 [A] ✔
N:131 [HIS] 0:2414 [A] N:131 [HIS] 0:2414 [A] ✔
N:116 [PHE] 0:2413 [A] N:116 [PHE] 0:2413 [A] ✔
N:109 [PRO] 0:2327 [A] N:109 [PRO] 0:2327 [A] ✔
N:109 [PRO] 0:2328 [U] N:109 [PRO] 0:2328 [U] ✔
N:109 [PRO] 0:2413 [A] N:109 [PRO] 0:2413 [A] ✔
N:9 [PRO] 0:2353 [A] N:9 [PRO] 0:2353 [A] ✔
N:28 [LYS] 0:2415 [A] N:28 [LYS] 0:2415 [A] ✔
N:28 [LYS] 0:2416 [G] N:28 [LYS] 0:2416 [G] ✔
N:28 [LYS] 0:2417 [C] N:28 [LYS] 0:2417 [C] ✔
N:26 [LEU] 0:2414 [A] N:26 [LEU] 0:2414 [A] ✔
N:26 [LEU] 0:2415 [A] N:26 [LEU] 0:2415 [A] ✔
N:12 [ARG] 0:2368 [A] N:12 [ARG] 0:2368 [A] ✔
N:130 [PRO] 0:2414 [A] N:130 [PRO] 0:2414 [A] ✔
N:130 [PRO] 0:2415 [A] N:130 [PRO] 0:2415 [A] ✔
N:16 [ALA] 0:2368 [A] N:16 [ALA] 0:2368 [A] ✔
N:5 [ARG] 0:2354 [A] N:5 [ARG] 0:2354 [A] ❌ 1YHQ_N_0
N:130 [PRO] 0:2413 [A] N:130 [PRO] 0:2413 [A] ❌ 1VQ8_N_0
N:6 [TYR] 0:2352 [G] N:6 [TYR] 0:2352 [G] ❌ 1VQ8_0:2352 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Archaeal large subunit ribosomal RNA 1.0 0.17 1.00 1.0 1.0 1.0 1.0 1.00 1.00 0.90 0.33


Other pairs involving 1VQ8_N_0 or 1YHQ_N_0

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_0 6AZ3_O_2 0.80 0.79 1.52 0.42 Ribonuclease H-like compare
1YHQ_N_0 7RYG_N_A 0.17 0.92 5.16 0.05 Ribonuclease H-like compare
1YHQ_N_0 7O7Y_BD_B5 0.71 0.94 3.12 0.42 Ribonuclease H-like compare
1YHQ_N_0 6S0Z_M_A 0.30 0.91 3.99 0.14 Ribonuclease H-like compare
1YHQ_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1YHQ_N_0 4Y4O_1S_1A 0.37 0.91 4.27 0.09 Ribonuclease H-like compare
1VQ8_N_0 6S0Z_M_A 0.30 0.91 3.95 0.14 Ribonuclease H-like compare
1VQ8_N_0 1YHQ_N_0 1.00 1.0 0.17 1.0 Ribonuclease H-like Archaeal large subunit ribosomal RNA compare
1VQ8_N_0 7RYG_N_A 0.17 0.92 5.13 0.05 Ribonuclease H-like compare
1VQ8_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 6AZ3_O_2 0.80 0.79 1.53 0.42 Ribonuclease H-like compare
1VQ8_N_0 7O7Y_BD_B5 0.71 0.94 3.15 0.42 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare