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All interfaces > All interologs > Interface groups > group122 > 1VQ8_N_0 vs 7K00_n_a

Interface analysis


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Common contacts -

1VQ8_N
1VQ8_0
7K00_n
7K00_a
Conserved?
N:20 [TYR] 0:2368 [A] n:12 [THR] a:2334 [U] ✔
N:102 [LEU] 0:2413 [A] n:92 [PHE] a:2376 [A] ✔
N:102 [LEU] 0:2414 [A] n:92 [PHE] a:2377 [A] ✔
N:22 [GLN] 0:2415 [A] n:14 [ALA] a:2378 [A] ✔
N:101 [VAL] 0:2415 [A] n:91 [SER] a:2378 [A] ✔
N:108 [SER] 0:2328 [U] n:98 [GLN] a:2294 [G] ✔
N:29 [SER] 0:2415 [A] n:21 [LEU] a:2378 [A] ✔
N:29 [SER] 0:2416 [G] n:21 [LEU] a:2379 [G] ✔
N:104 [ILE] 0:2413 [A] n:94 [ARG] a:2376 [A] ✔
N:21 [HIS] 0:2368 [A] n:13 [ARG] a:2334 [U] ✔
N:21 [HIS] 0:2369 [A] n:13 [ARG] a:2335 [A] ✔
N:21 [HIS] 0:2370 [A] n:13 [ARG] a:2336 [A] ✔
N:25 [ARG] 0:2415 [A] n:17 [LYS] a:2378 [A] ✔
N:25 [ARG] 0:2416 [G] n:17 [LYS] a:2379 [G] ✔
N:17 [ARG] 0:2368 [A] n:9 [ARG] a:2334 [U] ✔
N:109 [PRO] 0:2413 [A] n:99 [TYR] a:2376 [A] ✔
N:28 [LYS] 0:2417 [C] n:20 [GLU] a:2380 [C] ✔
N:26 [LEU] 0:2415 [A] n:18 [LEU] a:2378 [A] ✔
N:18 [THR] 0:2368 [A] n:10 [ARG] a:2334 [U] ❌ 7K00_n_a
N:22 [GLN] 0:2413 [A] n:14 [ALA] a:2376 [A] ❌ 7K00_n_a
N:22 [GLN] 0:2414 [A] n:14 [ALA] a:2377 [A] ❌ 7K00_n_a
N:101 [VAL] 0:2414 [A] n:91 [SER] a:2377 [A] ❌ 7K00_n_a
N:106 [LEU] 0:2368 [A] n:96 [GLY] a:2334 [U] ❌ 7K00_n_a
N:25 [ARG] 0:2414 [A] n:17 [LYS] a:2377 [A] ❌ 7K00_n_a
N:109 [PRO] 0:2327 [A] n:99 [TYR] a:2293 [G] ❌ 7K00_n_a
N:109 [PRO] 0:2328 [U] n:99 [TYR] a:2294 [G] ❌ 7K00_n_a
N:28 [LYS] 0:2415 [A] n:20 [GLU] a:2378 [A] ❌ 7K00_n_a
N:28 [LYS] 0:2416 [G] n:20 [GLU] a:2379 [G] ❌ 7K00_n_a
N:26 [LEU] 0:2414 [A] n:18 [LEU] a:2377 [A] ❌ 7K00_n_a
N:18 [THR] 0:2328 [U] n:10 [ARG] a:2294 [G] ❌ 1VQ8_N_0
N:25 [ARG] 0:2417 [C] n:17 [LYS] a:2380 [C] ❌ 1VQ8_N_0
N:29 [SER] 0:2417 [C] n:21 [LEU] a:2380 [C] ❌ 1VQ8_N_0
N:17 [ARG] 0:2369 [A] n:9 [ARG] a:2335 [A] ❌ 1VQ8_N_0
N:104 [ILE] 0:2327 [A] n:94 [ARG] a:2293 [G] ❌ 1VQ8_N_0
N:104 [ILE] 0:2328 [U] n:94 [ARG] a:2294 [G] ❌ 1VQ8_N_0
N:106 [LEU] 0:2328 [U] n:96 [GLY] a:2294 [G] ❌ 1VQ8_N_0
N:108 [SER] 0:2327 [A] n:98 [GLN] a:2293 [G] ❌ 1VQ8_N_0
N:13 [ARG] 0:2353 [A] n:5 [SER] a:2319 [G] ❌ 7K00_n:5, 7K00_a:2319 no longer at interface
N:21 [HIS] 0:2367 [A] n:13 [ARG] a:2333 [A] ❌ 7K00_a:2333 no longer at interface
N:18 [THR] 0:2329 [C] n:10 [ARG] a:2295 [C] ❌ 1VQ8_0:2329 no longer at interface
N:14 [ARG] 0:2329 [C] n:6 [ALA] a:2295 [C] ❌ 1VQ8_N:14, 1VQ8_0:2329 no longer at interface
N:17 [ARG] 0:2329 [C] n:9 [ARG] a:2295 [C] ❌ 1VQ8_0:2329 no longer at interface
N:17 [ARG] 0:2330 [U] n:9 [ARG] a:2296 [U] ❌ 1VQ8_0:2330 no longer at interface
N:13 [ARG] 0:2368 [A] n:5 [SER] a:2334 [U] ❌ 7K00_n:5 no longer at interface
N:19 [ASP] 0:2368 [A] n:11 [ALA] a:2334 [U] ❌ 7K00_n:11 no longer at interface
N:19 [ASP] 0:2369 [A] n:11 [ALA] a:2335 [A] ❌ 7K00_n:11 no longer at interface
N:27 [LEU] 0:2415 [A] n:19 [GLN] a:2378 [A] ❌ 7K00_n:19 no longer at interface
N:116 [PHE] 0:2413 [A] n:104 [GLN] a:2376 [A] ❌ 7K00_n:104 no longer at interface
N:16 [ALA] 0:2368 [A] n:8 [ILE] a:2334 [U] ❌ 7K00_n:8 no longer at interface
N:123 [ILE] 0:2414 [A] n:111 [ARG] a:2377 [A] ❌ 1VQ8_N:123 no longer at interface
N:123 [ILE] 0:2413 [A] n:111 [ARG] a:2376 [A] ❌ 1VQ8_N:123 no longer at interface
N:129 [ILE] 0:2414 [A] n:117 [PHE] a:2377 [A] ❌ 1VQ8_N:129 no longer at interface
N:129 [ILE] 0:2413 [A] n:117 [PHE] a:2376 [A] ❌ 1VQ8_N:129 no longer at interface
N:24 [LEU] 0:2368 [A] n:16 [ARG] a:2334 [U] ❌ 1VQ8_N:24 no longer at interface
N:31 [LYS] 0:2415 [A] n:23 [ALA] a:2378 [A] ❌ 1VQ8_N:31 no longer at interface
N:107 [ASN] 0:2328 [U] n:97 [PHE] a:2294 [G] ❌ 1VQ8_N:107 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.9 3.76 0.10 0.82 0.9 0.71 0.83 0.41 0.37 0.00 0.50


Other pairs involving 1VQ8_N_0 or 7K00_n_a

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_0 1YHQ_N_0 1.00 1.0 0.17 1.0 Ribonuclease H-like Archaeal large subunit ribosomal RNA compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare
1VQ8_N_0 6AZ3_O_2 0.80 0.79 1.53 0.42 Ribonuclease H-like compare
1VQ8_N_0 6S0Z_M_A 0.30 0.91 3.95 0.14 Ribonuclease H-like compare
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6AZ3_O_2 7K00_n_a 0.46 0.75 2.27 0.05 Ribonuclease H-like compare
6S0Z_M_A 7K00_n_a 0.68 0.97 2.72 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
1YHQ_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 7O7Y_BD_B5 0.71 0.94 3.15 0.42 Ribonuclease H-like compare
1VQ8_N_0 7RYG_N_A 0.17 0.92 5.13 0.05 Ribonuclease H-like compare