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All interfaces > All interologs > Interface groups > group122 > 1YHQ_N_0 vs 4Y4O_1S_1A

Interface analysis


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Common contacts -

1YHQ_N
1YHQ_0
4Y4O_1S
4Y4O_1A
Conserved?
N:20 [TYR] 0:2368 [A] 1S:12 [PHE] 1A:2346 [G] ✔
N:8 [VAL] 0:2353 [A] 1S:3 [ARG] 1A:2331 [G] ✔
N:102 [LEU] 0:2413 [A] 1S:87 [PHE] 1A:2388 [A] ✔
N:102 [LEU] 0:2414 [A] 1S:87 [PHE] 1A:2389 [A] ✔
N:101 [VAL] 0:2415 [A] 1S:86 [ALA] 1A:2390 [A] ✔
N:108 [SER] 0:2328 [U] 1S:93 [LYS] 1A:2306 [C] ✔
N:29 [SER] 0:2415 [A] 1S:21 [THR] 1A:2390 [A] ✔
N:29 [SER] 0:2416 [G] 1S:21 [THR] 1A:2391 [G] ✔
N:104 [ILE] 0:2413 [A] 1S:89 [ARG] 1A:2388 [A] ✔
N:21 [HIS] 0:2368 [A] 1S:13 [ARG] 1A:2346 [G] ✔
N:21 [HIS] 0:2369 [A] 1S:13 [ARG] 1A:2347 [A] ✔
N:25 [ARG] 0:2415 [A] 1S:17 [ARG] 1A:2390 [A] ✔
N:25 [ARG] 0:2416 [G] 1S:17 [ARG] 1A:2391 [G] ✔
N:17 [ARG] 0:2368 [A] 1S:9 [ARG] 1A:2346 [G] ✔
N:109 [PRO] 0:2413 [A] 1S:94 [TYR] 1A:2388 [A] ✔
N:9 [PRO] 0:2353 [A] 1S:4 [LEU] 1A:2331 [G] ✔
N:26 [LEU] 0:2414 [A] 1S:18 [ILE] 1A:2389 [A] ✔
N:26 [LEU] 0:2415 [A] 1S:18 [ILE] 1A:2390 [A] ✔
N:18 [THR] 0:2368 [A] 1S:10 [ARG] 1A:2346 [G] ❌ 4Y4O_1S_1A
N:22 [GLN] 0:2413 [A] 1S:14 [VAL] 1A:2388 [A] ❌ 4Y4O_1S_1A
N:22 [GLN] 0:2414 [A] 1S:14 [VAL] 1A:2389 [A] ❌ 4Y4O_1S_1A
N:22 [GLN] 0:2415 [A] 1S:14 [VAL] 1A:2390 [A] ❌ 4Y4O_1S_1A
N:101 [VAL] 0:2414 [A] 1S:86 [ALA] 1A:2389 [A] ❌ 4Y4O_1S_1A
N:106 [LEU] 0:2368 [A] 1S:91 [PRO] 1A:2346 [G] ❌ 4Y4O_1S_1A
N:21 [HIS] 0:2367 [A] 1S:13 [ARG] 1A:2345 [A] ❌ 4Y4O_1S_1A
N:25 [ARG] 0:2414 [A] 1S:17 [ARG] 1A:2389 [A] ❌ 4Y4O_1S_1A
N:109 [PRO] 0:2327 [A] 1S:94 [TYR] 1A:2305 [C] ❌ 4Y4O_1S_1A
N:109 [PRO] 0:2328 [U] 1S:94 [TYR] 1A:2306 [C] ❌ 4Y4O_1S_1A
N:18 [THR] 0:2328 [U] 1S:10 [ARG] 1A:2306 [C] ❌ 1YHQ_N_0
N:21 [HIS] 0:2328 [U] 1S:13 [ARG] 1A:2306 [C] ❌ 1YHQ_N_0
N:22 [GLN] 0:2328 [U] 1S:14 [VAL] 1A:2306 [C] ❌ 1YHQ_N_0
N:25 [ARG] 0:2417 [C] 1S:17 [ARG] 1A:2392 [C] ❌ 1YHQ_N_0
N:8 [VAL] 0:2354 [A] 1S:3 [ARG] 1A:2332 [A] ❌ 1YHQ_N_0
N:8 [VAL] 0:2352 [G] 1S:3 [ARG] 1A:2330 [G] ❌ 1YHQ_N_0
N:9 [PRO] 0:2368 [A] 1S:4 [LEU] 1A:2346 [G] ❌ 1YHQ_N_0
N:104 [ILE] 0:2328 [U] 1S:89 [ARG] 1A:2306 [C] ❌ 1YHQ_N_0
N:104 [ILE] 0:2327 [A] 1S:89 [ARG] 1A:2305 [C] ❌ 1YHQ_N_0
N:17 [ARG] 0:2369 [A] 1S:9 [ARG] 1A:2347 [A] ❌ 1YHQ_N_0
N:17 [ARG] 0:2367 [A] 1S:9 [ARG] 1A:2345 [A] ❌ 1YHQ_N_0
N:106 [LEU] 0:2328 [U] 1S:91 [PRO] 1A:2306 [C] ❌ 1YHQ_N_0
N:21 [HIS] 0:2370 [A] 1S:13 [ARG] 1A:2348 [A] ❌ 4Y4O_1A:2348 no longer at interface
N:18 [THR] 0:2329 [C] 1S:10 [ARG] 1A:2307 [C] ❌ 1YHQ_0:2329 no longer at interface
N:21 [HIS] 0:2329 [C] 1S:13 [ARG] 1A:2307 [C] ❌ 1YHQ_0:2329 no longer at interface
N:25 [ARG] 0:2325 [U] 1S:17 [ARG] 1A:2303 [U] ❌ 1YHQ_0:2325 no longer at interface
N:25 [ARG] 0:2326 [C] 1S:17 [ARG] 1A:2304 [C] ❌ 1YHQ_0:2326 no longer at interface
N:8 [VAL] 0:2331 [C] 1S:3 [ARG] 1A:2309 [C] ❌ 1YHQ_0:2331 no longer at interface
N:8 [VAL] 0:2330 [U] 1S:3 [ARG] 1A:2308 [U] ❌ 1YHQ_0:2330 no longer at interface
N:17 [ARG] 0:2330 [U] 1S:9 [ARG] 1A:2308 [U] ❌ 1YHQ_0:2330 no longer at interface
N:13 [ARG] 0:2353 [A] 1S:5 [THR] 1A:2331 [G] ❌ 4Y4O_1S:5 no longer at interface
N:13 [ARG] 0:2368 [A] 1S:5 [THR] 1A:2346 [G] ❌ 4Y4O_1S:5 no longer at interface
N:19 [ASP] 0:2368 [A] 1S:11 [LYS] 1A:2346 [G] ❌ 4Y4O_1S:11 no longer at interface
N:19 [ASP] 0:2369 [A] 1S:11 [LYS] 1A:2347 [A] ❌ 4Y4O_1S:11 no longer at interface
N:27 [LEU] 0:2415 [A] 1S:19 [LYS] 1A:2390 [A] ❌ 4Y4O_1S:19 no longer at interface
N:116 [PHE] 0:2413 [A] 1S:99 [LYS] 1A:2388 [A] ❌ 4Y4O_1S:99 no longer at interface
N:28 [LYS] 0:2415 [A] 1S:20 [ARG] 1A:2390 [A] ❌ 4Y4O_1S:20 no longer at interface
N:28 [LYS] 0:2416 [G] 1S:20 [ARG] 1A:2391 [G] ❌ 4Y4O_1S:20 no longer at interface
N:28 [LYS] 0:2417 [C] 1S:20 [ARG] 1A:2392 [C] ❌ 4Y4O_1S:20 no longer at interface
N:16 [ALA] 0:2368 [A] 1S:8 [GLU] 1A:2346 [G] ❌ 4Y4O_1S:8 no longer at interface
N:123 [ILE] 0:2414 [A] 1S:106 [ARG] 1A:2389 [A] ❌ 1YHQ_N:123 no longer at interface
N:123 [ILE] 0:2413 [A] 1S:106 [ARG] 1A:2388 [A] ❌ 1YHQ_N:123 no longer at interface
N:129 [ILE] 0:2414 [A] 1S:112 [PHE] 1A:2389 [A] ❌ 1YHQ_N:129 no longer at interface
N:129 [ILE] 0:2415 [A] 1S:112 [PHE] 1A:2390 [A] ❌ 1YHQ_N:129 no longer at interface
N:129 [ILE] 0:2413 [A] 1S:112 [PHE] 1A:2388 [A] ❌ 1YHQ_N:129 no longer at interface
N:24 [LEU] 0:2368 [A] 1S:16 [ASN] 1A:2346 [G] ❌ 1YHQ_N:24 no longer at interface
N:31 [LYS] 0:2415 [A] 1S:23 [ARG] 1A:2390 [A] ❌ 1YHQ_N:31 no longer at interface
N:31 [LYS] 0:2416 [G] 1S:23 [ARG] 1A:2391 [G] ❌ 1YHQ_N:31 no longer at interface
N:100 [ALA] 0:2415 [A] 1S:85 [VAL] 1A:2390 [A] ❌ 1YHQ_N:100 no longer at interface
N:107 [ASN] 0:2328 [U] 1S:92 [TYR] 1A:2306 [C] ❌ 1YHQ_N:107 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.91 4.27 0.09 0.84 0.93 0.7 0.72 0.37 0.31 0.00 0.56


Other pairs involving 1YHQ_N_0 or 4Y4O_1S_1A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_0 1YHQ_N_0 1.00 1.0 0.17 1.0 Ribonuclease H-like Archaeal large subunit ribosomal RNA compare
1YHQ_N_0 4Y4O_1S_1A 0.37 0.91 4.27 0.09 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare
4Y4O_1S_1A 6AZ3_O_2 0.40 0.75 4.24 0.0 Ribonuclease H-like compare
1YHQ_N_0 6AZ3_O_2 0.80 0.79 1.52 0.42 Ribonuclease H-like compare
4Y4O_1S_1A 6S0Z_M_A 0.62 0.97 2.94 0.38 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
1YHQ_N_0 6S0Z_M_A 0.30 0.91 3.99 0.14 Ribonuclease H-like compare
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
1YHQ_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
4Y4O_1S_1A 7O7Y_BD_B5 0.36 0.89 4.42 0.04 Ribonuclease H-like compare
1YHQ_N_0 7O7Y_BD_B5 0.71 0.94 3.12 0.42 Ribonuclease H-like compare
4Y4O_1S_1A 7RYG_N_A 0.56 0.95 3.79 0.47 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
1YHQ_N_0 7RYG_N_A 0.17 0.92 5.16 0.05 Ribonuclease H-like compare