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All interfaces > All interologs > Interface groups > group122 > 4Y4O_1S_1A

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Contacts -

4Y4O_1S
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1S:3 [ARG] 1A:2308 [U] 4.26 1A:2347 [A] 65.82
1S:3 [ARG] 1A:2309 [C] 4.58 1A:2333 [G] 65.82
1S:3 [ARG] 1A:2330 [G] 4.57 1A:2310 [A] 65.82
1S:3 [ARG] 1A:2331 [G] 2.84 65.82
1S:3 [ARG] 1A:2332 [A] 3.41 base:SC 65.82
1S:4 [LEU] 1A:2331 [G] 3.44 38.92
1S:4 [LEU] 1A:2346 [G] 3.34 38.92
1S:6 [ALA] 1A:2307 [C] 3.63 1A:2349 [G] 11.16
1S:6 [ALA] 1A:2308 [U] 3.36 1A:2347 [A] 11.16
1S:9 [ARG] 1A:2308 [U] 2.81 1A:2347 [A] base/AA stacks 55.57
1S:9 [ARG] 1A:2345 [A] 3.62 55.57
1S:9 [ARG] 1A:2346 [G] 3.49 55.57
1S:9 [ARG] 1A:2347 [A] 4.4 1A:2308 [U] 55.57
1S:10 [ARG] 1A:2306 [C] 3.42 1A:2350 [G] 82.53
1S:10 [ARG] 1A:2307 [C] 2.73 1A:2349 [G] 82.53
1S:12 [PHE] 1A:2346 [G] 3.14 base/AA stacks 0.26
1S:13 [ARG] 1A:2306 [C] 2.81 1A:2350 [G] 80.23
1S:13 [ARG] 1A:2307 [C] 3.49 1A:2349 [G] 80.23
1S:13 [ARG] 1A:2346 [G] 4.86 80.23
1S:13 [ARG] 1A:2347 [A] 3.73 1A:2308 [U] 80.23
1S:14 [VAL] 1A:2306 [C] 4.52 1A:2350 [G] 53.31
1S:16 [ASN] 1A:2346 [G] 2.84 base:SC, base:SC 40.11
1S:17 [ARG] 1A:2303 [U] 4.66 1A:2353 [G] 60.53
1S:17 [ARG] 1A:2304 [C] 2.68 1A:2352 [G] 60.53
1S:17 [ARG] 1A:2390 [A] 3.61 1A:2387 [G] base/AA stacks 60.53
1S:17 [ARG] 1A:2391 [G] 2.63 1A:2386 [C] sugar:SC 60.53
1S:17 [ARG] 1A:2392 [C] 3.4 1A:2385 [G] 60.53
1S:18 [ILE] 1A:2389 [A] 4.04 55.68
1S:18 [ILE] 1A:2390 [A] 3.48 1A:2387 [G] 55.68
1S:21 [THR] 1A:2390 [A] 2.88 1A:2387 [G] sugar:SC 66.23
1S:21 [THR] 1A:2391 [G] 3.93 1A:2386 [C] 66.23
1S:23 [ARG] 1A:2390 [A] 3.3 1A:2387 [G] 64.54
1S:23 [ARG] 1A:2391 [G] 3.74 1A:2386 [C] 64.54
1S:85 [VAL] 1A:2390 [A] 4.52 1A:2387 [G] 78.43
1S:86 [ALA] 1A:2390 [A] 3.47 1A:2387 [G] 78.59
1S:87 [PHE] 1A:2388 [A] 3.57 83.46
1S:87 [PHE] 1A:2389 [A] 3.98 83.46
1S:89 [ARG] 1A:2305 [C] 3.32 1A:2351 [G] 95.76
1S:89 [ARG] 1A:2306 [C] 2.81 1A:2350 [G] 95.76
1S:89 [ARG] 1A:2388 [A] 3.79 95.76
1S:91 [PRO] 1A:2306 [C] 4.87 1A:2350 [G] 62.21
1S:92 [TYR] 1A:2306 [C] 4.86 1A:2350 [G] 44.32
1S:93 [LYS] 1A:2306 [C] 4.87 1A:2350 [G] 41.59
1S:94 [TYR] 1A:2388 [A] 3.34 base/AA stacks 85.02
1S:106 [ARG] 1A:2388 [A] 2.8 base:SC 93.07
1S:106 [ARG] 1A:2389 [A] 3.45 sugar:SC 93.07
1S:112 [PHE] 1A:2388 [A] 4.39 67.6
1S:112 [PHE] 1A:2389 [A] 2.79 sugar:BB 67.6
1S:112 [PHE] 1A:2390 [A] 4.92 1A:2387 [G] 67.6

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group122 4Y4O_1S_1A 1S: 50s ribosomal protein l18, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHQ4 Ribonuclease H-like Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 6S0Z_M_A 0.62 0.97 2.94 0.38 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 6AZ3_O_2 0.40 0.75 4.24 0.0 Ribonuclease H-like compare
4Y4O_1S_1A 7RYG_N_A 0.56 0.95 3.79 0.47 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 7O7Y_BD_B5 0.36 0.89 4.42 0.04 Ribonuclease H-like compare
1YHQ_N_0 4Y4O_1S_1A 0.37 0.91 4.27 0.09 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare