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All interfaces > All interologs > Interface groups > group122 > 4Y4O_1S_1A vs 6S0Z_M_A

Interface analysis


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Common contacts -

4Y4O_1S
4Y4O_1A
6S0Z_M
6S0Z_A
Conserved?
1S:106 [ARG] 1A:2388 [A] M:113 [ARG] A:2403 [A] ✔
1S:106 [ARG] 1A:2389 [A] M:113 [ARG] A:2404 [A] ✔
1S:85 [VAL] 1A:2390 [A] M:92 [ILE] A:2405 [A] ✔
1S:94 [TYR] 1A:2388 [A] M:101 [TYR] A:2403 [A] ✔
1S:6 [ALA] 1A:2307 [C] M:10 [VAL] A:2322 [C] ✔
1S:93 [LYS] 1A:2306 [C] M:100 [LEU] A:2321 [C] ✔
1S:10 [ARG] 1A:2306 [C] M:14 [ARG] A:2321 [C] ✔
1S:10 [ARG] 1A:2307 [C] M:14 [ARG] A:2322 [C] ✔
1S:18 [ILE] 1A:2390 [A] M:22 [LEU] A:2405 [A] ✔
1S:23 [ARG] 1A:2390 [A] M:28 [LYS] A:2405 [A] ✔
1S:23 [ARG] 1A:2391 [G] M:28 [LYS] A:2406 [G] ✔
1S:91 [PRO] 1A:2306 [C] M:98 [GLY] A:2321 [C] ✔
1S:92 [TYR] 1A:2306 [C] M:99 [TYR] A:2321 [C] ✔
1S:13 [ARG] 1A:2307 [C] M:17 [ARG] A:2322 [C] ✔
1S:13 [ARG] 1A:2346 [G] M:17 [ARG] A:2361 [U] ✔
1S:13 [ARG] 1A:2347 [A] M:17 [ARG] A:2362 [A] ✔
1S:9 [ARG] 1A:2346 [G] M:13 [LYS] A:2361 [U] ✔
1S:87 [PHE] 1A:2388 [A] M:94 [PHE] A:2403 [A] ✔
1S:87 [PHE] 1A:2389 [A] M:94 [PHE] A:2404 [A] ✔
1S:86 [ALA] 1A:2390 [A] M:93 [VAL] A:2405 [A] ✔
1S:17 [ARG] 1A:2390 [A] M:21 [ASN] A:2405 [A] ✔
1S:16 [ASN] 1A:2346 [G] M:20 [THR] A:2361 [U] ✔
1S:89 [ARG] 1A:2305 [C] M:96 [ARG] A:2320 [C] ✔
1S:89 [ARG] 1A:2306 [C] M:96 [ARG] A:2321 [C] ✔
1S:89 [ARG] 1A:2388 [A] M:96 [ARG] A:2403 [A] ✔
1S:112 [PHE] 1A:2388 [A] M:119 [PHE] A:2403 [A] ✔
1S:112 [PHE] 1A:2389 [A] M:119 [PHE] A:2404 [A] ✔
1S:6 [ALA] 1A:2308 [U] M:10 [VAL] A:2323 [U] ❌ 6S0Z_M_A
1S:18 [ILE] 1A:2389 [A] M:22 [LEU] A:2404 [A] ❌ 6S0Z_M_A
1S:13 [ARG] 1A:2306 [C] M:17 [ARG] A:2321 [C] ❌ 6S0Z_M_A
1S:9 [ARG] 1A:2308 [U] M:13 [LYS] A:2323 [U] ❌ 6S0Z_M_A
1S:9 [ARG] 1A:2345 [A] M:13 [LYS] A:2360 [A] ❌ 6S0Z_M_A
1S:9 [ARG] 1A:2347 [A] M:13 [LYS] A:2362 [A] ❌ 6S0Z_M_A
1S:17 [ARG] 1A:2391 [G] M:21 [ASN] A:2406 [G] ❌ 6S0Z_M_A
1S:112 [PHE] 1A:2390 [A] M:119 [PHE] A:2405 [A] ❌ 6S0Z_M_A
1S:93 [LYS] 1A:2305 [C] M:100 [LEU] A:2320 [C] ❌ 4Y4O_1S_1A
1S:13 [ARG] 1A:2308 [U] M:17 [ARG] A:2323 [U] ❌ 4Y4O_1S_1A
1S:13 [ARG] 1A:2345 [A] M:17 [ARG] A:2360 [A] ❌ 4Y4O_1S_1A
1S:17 [ARG] 1A:2303 [U] M:21 [ASN] A:2318 [U] ❌ 6S0Z_A:2318 no longer at interface
1S:17 [ARG] 1A:2304 [C] M:21 [ASN] A:2319 [U] ❌ 6S0Z_A:2319 no longer at interface
1S:17 [ARG] 1A:2392 [C] M:21 [ASN] A:2407 [A] ❌ 6S0Z_A:2407 no longer at interface
1S:12 [PHE] 1A:2346 [G] M:16 [ALA] A:2361 [U] ❌ 6S0Z_M:16 no longer at interface
1S:14 [VAL] 1A:2306 [C] M:18 [VAL] A:2321 [C] ❌ 6S0Z_M:18 no longer at interface
1S:103 [GLU] 1A:2388 [A] M:110 [GLU] A:2403 [A] ❌ 4Y4O_1S:103 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial large subunit ribosomal RNA 0.97 2.94 0.38 0.88 0.97 0.86 0.85 0.62 0.43 0.27 0.35


Other pairs involving 4Y4O_1S_1A or 6S0Z_M_A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_0 4Y4O_1S_1A 0.37 0.91 4.27 0.09 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare
4Y4O_1S_1A 6AZ3_O_2 0.40 0.75 4.24 0.0 Ribonuclease H-like compare
4Y4O_1S_1A 6S0Z_M_A 0.62 0.97 2.94 0.38 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6AZ3_O_2 6S0Z_M_A 0.37 0.75 3.35 0.05 Ribonuclease H-like compare
1YHQ_N_0 6S0Z_M_A 0.30 0.91 3.99 0.14 Ribonuclease H-like compare
1VQ8_N_0 6S0Z_M_A 0.30 0.91 3.95 0.14 Ribonuclease H-like compare
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6S0Z_M_A 7K00_n_a 0.68 0.97 2.72 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 7O7Y_BD_B5 0.36 0.89 4.42 0.04 Ribonuclease H-like compare
6S0Z_M_A 7O7Y_BD_B5 0.26 0.89 4.78 0.05 Ribonuclease H-like compare
4Y4O_1S_1A 7RYG_N_A 0.56 0.95 3.79 0.47 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6S0Z_M_A 7RYG_N_A 0.66 0.98 2.44 0.37 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare