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All interfaces > All interologs > Interface groups > group122 > 4Y4O_1S_1A vs 7K00_n_a

Interface analysis


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Common contacts -

4Y4O_1S
4Y4O_1A
7K00_n
7K00_a
Conserved?
1S:106 [ARG] 1A:2388 [A] n:111 [ARG] a:2376 [A] ✔
1S:106 [ARG] 1A:2389 [A] n:111 [ARG] a:2377 [A] ✔
1S:94 [TYR] 1A:2388 [A] n:99 [TYR] a:2376 [A] ✔
1S:6 [ALA] 1A:2307 [C] n:6 [ALA] a:2295 [C] ✔
1S:93 [LYS] 1A:2306 [C] n:98 [GLN] a:2294 [G] ✔
1S:10 [ARG] 1A:2306 [C] n:10 [ARG] a:2294 [G] ✔
1S:10 [ARG] 1A:2307 [C] n:10 [ARG] a:2295 [C] ✔
1S:18 [ILE] 1A:2390 [A] n:18 [LEU] a:2378 [A] ✔
1S:23 [ARG] 1A:2390 [A] n:23 [ALA] a:2378 [A] ✔
1S:91 [PRO] 1A:2306 [C] n:96 [GLY] a:2294 [G] ✔
1S:92 [TYR] 1A:2306 [C] n:97 [PHE] a:2294 [G] ✔
1S:13 [ARG] 1A:2346 [G] n:13 [ARG] a:2334 [U] ✔
1S:13 [ARG] 1A:2347 [A] n:13 [ARG] a:2335 [A] ✔
1S:12 [PHE] 1A:2346 [G] n:12 [THR] a:2334 [U] ✔
1S:9 [ARG] 1A:2308 [U] n:9 [ARG] a:2296 [U] ✔
1S:9 [ARG] 1A:2346 [G] n:9 [ARG] a:2334 [U] ✔
1S:9 [ARG] 1A:2347 [A] n:9 [ARG] a:2335 [A] ✔
1S:87 [PHE] 1A:2388 [A] n:92 [PHE] a:2376 [A] ✔
1S:87 [PHE] 1A:2389 [A] n:92 [PHE] a:2377 [A] ✔
1S:86 [ALA] 1A:2390 [A] n:91 [SER] a:2378 [A] ✔
1S:21 [THR] 1A:2390 [A] n:21 [LEU] a:2378 [A] ✔
1S:21 [THR] 1A:2391 [G] n:21 [LEU] a:2379 [G] ✔
1S:17 [ARG] 1A:2390 [A] n:17 [LYS] a:2378 [A] ✔
1S:17 [ARG] 1A:2391 [G] n:17 [LYS] a:2379 [G] ✔
1S:17 [ARG] 1A:2392 [C] n:17 [LYS] a:2380 [C] ✔
1S:16 [ASN] 1A:2346 [G] n:16 [ARG] a:2334 [U] ✔
1S:89 [ARG] 1A:2305 [C] n:94 [ARG] a:2293 [G] ✔
1S:89 [ARG] 1A:2306 [C] n:94 [ARG] a:2294 [G] ✔
1S:89 [ARG] 1A:2388 [A] n:94 [ARG] a:2376 [A] ✔
1S:112 [PHE] 1A:2388 [A] n:117 [PHE] a:2376 [A] ✔
1S:112 [PHE] 1A:2389 [A] n:117 [PHE] a:2377 [A] ✔
1S:6 [ALA] 1A:2308 [U] n:6 [ALA] a:2296 [U] ❌ 7K00_n_a
1S:18 [ILE] 1A:2389 [A] n:18 [LEU] a:2377 [A] ❌ 7K00_n_a
1S:23 [ARG] 1A:2391 [G] n:23 [ALA] a:2379 [G] ❌ 7K00_n_a
1S:13 [ARG] 1A:2306 [C] n:13 [ARG] a:2294 [G] ❌ 7K00_n_a
1S:13 [ARG] 1A:2307 [C] n:13 [ARG] a:2295 [C] ❌ 7K00_n_a
1S:14 [VAL] 1A:2306 [C] n:14 [ALA] a:2294 [G] ❌ 7K00_n_a
1S:112 [PHE] 1A:2390 [A] n:117 [PHE] a:2378 [A] ❌ 7K00_n_a
1S:14 [VAL] 1A:2390 [A] n:14 [ALA] a:2378 [A] ❌ 4Y4O_1S_1A
1S:21 [THR] 1A:2392 [C] n:21 [LEU] a:2380 [C] ❌ 4Y4O_1S_1A
1S:9 [ARG] 1A:2307 [C] n:9 [ARG] a:2295 [C] ❌ 4Y4O_1S_1A
1S:93 [LYS] 1A:2305 [C] n:98 [GLN] a:2293 [G] ❌ 4Y4O_1S_1A
1S:9 [ARG] 1A:2345 [A] n:9 [ARG] a:2333 [A] ❌ 7K00_a:2333 no longer at interface
1S:17 [ARG] 1A:2303 [U] n:17 [LYS] a:2291 [U] ❌ 7K00_a:2291 no longer at interface
1S:17 [ARG] 1A:2304 [C] n:17 [LYS] a:2292 [U] ❌ 7K00_a:2292 no longer at interface
1S:4 [LEU] 1A:2331 [G] n:4 [LYS] a:2319 [G] ❌ 7K00_n:4, 7K00_a:2319 no longer at interface
1S:13 [ARG] 1A:2348 [A] n:13 [ARG] a:2336 [A] ❌ 4Y4O_1A:2348 no longer at interface
1S:85 [VAL] 1A:2390 [A] n:90 [VAL] a:2378 [A] ❌ 7K00_n:90 no longer at interface
1S:4 [LEU] 1A:2346 [G] n:4 [LYS] a:2334 [U] ❌ 7K00_n:4 no longer at interface
1S:20 [ARG] 1A:2392 [C] n:20 [GLU] a:2380 [C] ❌ 4Y4O_1S:20 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like Bacterial large subunit ribosomal RNA 0.96 1.65 0.43 0.91 0.96 0.95 0.92 0.77 0.75 0.32 0.42


Other pairs involving 4Y4O_1S_1A or 7K00_n_a

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 6S0Z_M_A 0.62 0.97 2.94 0.38 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 6AZ3_O_2 0.40 0.75 4.24 0.0 Ribonuclease H-like compare
4Y4O_1S_1A 7RYG_N_A 0.56 0.95 3.79 0.47 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 7O7Y_BD_B5 0.36 0.89 4.42 0.04 Ribonuclease H-like compare
6AZ3_O_2 7K00_n_a 0.46 0.75 2.27 0.05 Ribonuclease H-like compare
6S0Z_M_A 7K00_n_a 0.68 0.97 2.72 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
1YHQ_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1YHQ_N_0 4Y4O_1S_1A 0.37 0.91 4.27 0.09 Ribonuclease H-like compare
1VQ8_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare