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All interfaces > All interologs > Interface groups > group122 > 4Y4O_1S_1A vs 7O7Y_BD_B5

Interface analysis


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Common contacts -

4Y4O_1S
4Y4O_1A
7O7Y_BD
7O7Y_B5
Conserved?
1S:94 [TYR] 1A:2388 [A] BD:153 [THR] B5:4069 [A] ✔
1S:93 [LYS] 1A:2306 [C] BD:151 [ALA] B5:3986 [G] ✔
1S:3 [ARG] 1A:2331 [G] BD:18 [VAL] B5:4011 [U] ✔
1S:18 [ILE] 1A:2389 [A] BD:36 [LEU] B5:4070 [A] ✔
1S:18 [ILE] 1A:2390 [A] BD:36 [LEU] B5:4071 [A] ✔
1S:92 [TYR] 1A:2306 [C] BD:150 [LEU] B5:3986 [G] ✔
1S:13 [ARG] 1A:2347 [A] BD:31 [TYR] B5:4027 [A] ✔
1S:12 [PHE] 1A:2346 [G] BD:30 [TYR] B5:4026 [A] ✔
1S:9 [ARG] 1A:2346 [G] BD:28 [THR] B5:4026 [A] ✔
1S:87 [PHE] 1A:2389 [A] BD:145 [TYR] B5:4070 [A] ✔
1S:17 [ARG] 1A:2304 [C] BD:35 [ARG] B5:3984 [G] ✔
1S:17 [ARG] 1A:2390 [A] BD:35 [ARG] B5:4071 [A] ✔
1S:17 [ARG] 1A:2391 [G] BD:35 [ARG] B5:4072 [G] ✔
1S:4 [LEU] 1A:2346 [G] BD:23 [ARG] B5:4026 [A] ✔
1S:112 [PHE] 1A:2388 [A] BD:174 [PRO] B5:4069 [A] ✔
1S:112 [PHE] 1A:2389 [A] BD:174 [PRO] B5:4070 [A] ✔
1S:112 [PHE] 1A:2390 [A] BD:174 [PRO] B5:4071 [A] ✔
1S:85 [VAL] 1A:2390 [A] BD:143 [THR] B5:4071 [A] ❌ 7O7Y_BD_B5
1S:10 [ARG] 1A:2306 [C] BD:29 [ASP] B5:3986 [G] ❌ 7O7Y_BD_B5
1S:3 [ARG] 1A:2330 [G] BD:18 [VAL] B5:4010 [G] ❌ 7O7Y_BD_B5
1S:3 [ARG] 1A:2332 [A] BD:18 [VAL] B5:4012 [G] ❌ 7O7Y_BD_B5
1S:23 [ARG] 1A:2390 [A] BD:47 [PRO] B5:4071 [A] ❌ 7O7Y_BD_B5
1S:23 [ARG] 1A:2391 [G] BD:47 [PRO] B5:4072 [G] ❌ 7O7Y_BD_B5
1S:13 [ARG] 1A:2306 [C] BD:31 [TYR] B5:3986 [G] ❌ 7O7Y_BD_B5
1S:13 [ARG] 1A:2346 [G] BD:31 [TYR] B5:4026 [A] ❌ 7O7Y_BD_B5
1S:9 [ARG] 1A:2345 [A] BD:28 [THR] B5:4025 [A] ❌ 7O7Y_BD_B5
1S:9 [ARG] 1A:2347 [A] BD:28 [THR] B5:4027 [A] ❌ 7O7Y_BD_B5
1S:87 [PHE] 1A:2388 [A] BD:145 [TYR] B5:4069 [A] ❌ 7O7Y_BD_B5
1S:4 [LEU] 1A:2331 [G] BD:23 [ARG] B5:4011 [U] ❌ 7O7Y_BD_B5
1S:14 [VAL] 1A:2306 [C] BD:32 [ALA] B5:3986 [G] ❌ 7O7Y_BD_B5
1S:87 [PHE] 1A:2390 [A] BD:145 [TYR] B5:4071 [A] ❌ 4Y4O_1S_1A
1S:87 [PHE] 1A:2391 [G] BD:145 [TYR] B5:4072 [G] ❌ 4Y4O_1S_1A
1S:92 [TYR] 1A:2346 [G] BD:150 [LEU] B5:4026 [A] ❌ 4Y4O_1S_1A
1S:4 [LEU] 1A:2345 [A] BD:23 [ARG] B5:4025 [A] ❌ 4Y4O_1S_1A
1S:10 [ARG] 1A:2346 [G] BD:29 [ASP] B5:4026 [A] ❌ 4Y4O_1S_1A
1S:10 [ARG] 1A:2347 [A] BD:29 [ASP] B5:4027 [A] ❌ 4Y4O_1S_1A
1S:13 [ARG] 1A:2304 [C] BD:31 [TYR] B5:3984 [G] ❌ 4Y4O_1S_1A
1S:14 [VAL] 1A:2390 [A] BD:32 [ALA] B5:4071 [A] ❌ 4Y4O_1S_1A
1S:6 [ALA] 1A:2307 [C] BD:25 [GLU] B5:3987 [C] ❌ 7O7Y_BD:25, 7O7Y_B5:3987 no longer at interface
1S:6 [ALA] 1A:2308 [U] BD:25 [GLU] B5:3988 [U] ❌ 7O7Y_BD:25, 7O7Y_B5:3988 no longer at interface
1S:10 [ARG] 1A:2307 [C] BD:29 [ASP] B5:3987 [C] ❌ 7O7Y_B5:3987 no longer at interface
1S:3 [ARG] 1A:2308 [U] BD:18 [VAL] B5:3988 [U] ❌ 7O7Y_B5:3988 no longer at interface
1S:3 [ARG] 1A:2309 [C] BD:18 [VAL] B5:3989 [C] ❌ 7O7Y_B5:3989 no longer at interface
1S:13 [ARG] 1A:2307 [C] BD:31 [TYR] B5:3987 [C] ❌ 7O7Y_B5:3987 no longer at interface
1S:9 [ARG] 1A:2308 [U] BD:28 [THR] B5:3988 [U] ❌ 7O7Y_B5:3988 no longer at interface
1S:17 [ARG] 1A:2303 [U] BD:35 [ARG] B5:3983 [C] ❌ 7O7Y_B5:3983 no longer at interface
1S:17 [ARG] 1A:2392 [C] BD:35 [ARG] B5:4073 [C] ❌ 7O7Y_B5:4073 no longer at interface
1S:13 [ARG] 1A:2348 [A] BD:31 [TYR] B5:4028 [A] ❌ 4Y4O_1A:2348 no longer at interface
1S:17 [ARG] 1A:2348 [A] BD:35 [ARG] B5:4028 [A] ❌ 4Y4O_1A:2348 no longer at interface
1S:106 [ARG] 1A:2388 [A] BD:168 [ASP] B5:4069 [A] ❌ 7O7Y_BD:168 no longer at interface
1S:106 [ARG] 1A:2389 [A] BD:168 [ASP] B5:4070 [A] ❌ 7O7Y_BD:168 no longer at interface
1S:91 [PRO] 1A:2306 [C] BD:149 [GLY] B5:3986 [G] ❌ 7O7Y_BD:149 no longer at interface
1S:86 [ALA] 1A:2390 [A] BD:144 [CYS] B5:4071 [A] ❌ 7O7Y_BD:144 no longer at interface
1S:21 [THR] 1A:2390 [A] BD:39 [GLN] B5:4071 [A] ❌ 7O7Y_BD:39 no longer at interface
1S:21 [THR] 1A:2391 [G] BD:39 [GLN] B5:4072 [G] ❌ 7O7Y_BD:39 no longer at interface
1S:16 [ASN] 1A:2346 [G] BD:34 [LYS] B5:4026 [A] ❌ 7O7Y_BD:34 no longer at interface
1S:89 [ARG] 1A:2305 [C] BD:147 [ASP] B5:3985 [A] ❌ 7O7Y_BD:147 no longer at interface
1S:89 [ARG] 1A:2306 [C] BD:147 [ASP] B5:3986 [G] ❌ 7O7Y_BD:147 no longer at interface
1S:89 [ARG] 1A:2388 [A] BD:147 [ASP] B5:4069 [A] ❌ 7O7Y_BD:147 no longer at interface
1S:88 [ASP] 1A:2389 [A] BD:146 [LEU] B5:4070 [A] ❌ 4Y4O_1S:88 no longer at interface
1S:88 [ASP] 1A:2388 [A] BD:146 [LEU] B5:4069 [A] ❌ 4Y4O_1S:88 no longer at interface
1S:90 [GLY] 1A:2388 [A] BD:148 [ALA] B5:4069 [A] ❌ 4Y4O_1S:90 no longer at interface
1S:98 [VAL] 1A:2388 [A] BD:160 [PHE] B5:4069 [A] ❌ 4Y4O_1S:98 no longer at interface
1S:7 [TYR] 1A:2346 [G] BD:26 [GLY] B5:4026 [A] ❌ 4Y4O_1S:7 no longer at interface
1S:8 [GLU] 1A:2346 [G] BD:27 [LYS] B5:4026 [A] ❌ 4Y4O_1S:8 no longer at interface
1S:19 [LYS] 1A:2390 [A] BD:37 [VAL] B5:4071 [A] ❌ 4Y4O_1S:19 no longer at interface
1S:24 [LEU] 1A:2390 [A] BD:48 [LYS] B5:4071 [A] ❌ 4Y4O_1S:24 no longer at interface
1S:24 [LEU] 1A:2391 [G] BD:48 [LYS] B5:4072 [G] ❌ 4Y4O_1S:24 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.89 4.42 0.04 0.82 0.89 0.7 0.72 0.36 0.25 0.00 0.59


Other pairs involving 4Y4O_1S_1A or 7O7Y_BD_B5

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 6S0Z_M_A 0.62 0.97 2.94 0.38 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 6AZ3_O_2 0.40 0.75 4.24 0.0 Ribonuclease H-like compare
4Y4O_1S_1A 7RYG_N_A 0.56 0.95 3.79 0.47 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
4Y4O_1S_1A 7O7Y_BD_B5 0.36 0.89 4.42 0.04 Ribonuclease H-like compare
6AZ3_O_2 7O7Y_BD_B5 0.93 0.92 0.85 0.68 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA compare
6S0Z_M_A 7O7Y_BD_B5 0.26 0.89 4.78 0.05 Ribonuclease H-like compare
6AZ3_O_1 7O7Y_BD_B5 0.65 0.93 1.41 0.33 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA compare
1YHQ_N_0 7O7Y_BD_B5 0.71 0.94 3.12 0.42 Ribonuclease H-like compare
1YHQ_N_0 4Y4O_1S_1A 0.37 0.91 4.27 0.09 Ribonuclease H-like compare
1VQ8_N_0 7O7Y_BD_B5 0.71 0.94 3.15 0.42 Ribonuclease H-like compare
1VQ8_N_0 4Y4O_1S_1A 0.37 0.91 4.22 0.09 Ribonuclease H-like compare