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All interfaces > All interologs > Interface groups > group122 > 6AZ3_O_1

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_O
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
O:3 [PHE] 1:1064 [G] 3.08 1:1088 [C] base:BB 36.1
O:3 [PHE] 1:1067 [U] 4.81 1:1087 [A] 36.1
O:3 [PHE] 1:1088 [C] 4.08 1:1064 [G] 36.1
O:3 [PHE] 1:1089 [C] 3.4 1:1063 [G] sugar:BB 36.1
O:4 [VAL] 1:1089 [C] 3.73 1:1063 [G] 20.0
O:4 [VAL] 1:1090 [U] 4.52 1:1062 [A] 20.0
O:5 [LYS] 1:1089 [C] 3.29 1:1063 [G] 37.8
O:5 [LYS] 1:1090 [U] 3.12 1:1062 [A] 37.8
O:6 [VAL] 1:1089 [C] 4.23 1:1063 [G] 28.8
O:6 [VAL] 1:1090 [U] 2.94 1:1062 [A] 28.8
O:9 [ASN] 1:1054 [A] 4.56 26.4
O:9 [ASN] 1:1091 [A] 3.98 1:1061 [G] 26.4
O:10 [LYS] 1:1052 [A] 4.18 8:104 [C] 69.2
O:10 [LYS] 1:1053 [A] 2.72 69.2
O:11 [ALA] 1:1053 [A] 3.41 70.8
O:11 [ALA] 1:1054 [A] 3.6 70.8
O:14 [LYS] 1:1053 [A] 3.37 27.2
O:15 [ARG] 1:1053 [A] 4.42 53.7
O:15 [ARG] 1:1054 [A] 3.24 53.7
O:39 [GLN] 1:1131 [C] 4.78 1:1134 [C] 90.8
O:42 [THR] 1:1130 [C] 4.8 1:1136 [G] 63.0
O:43 [LYS] 1:1130 [C] 3.33 1:1136 [G] 65.4
O:43 [LYS] 1:1131 [C] 3.54 1:1134 [C] 65.4
O:44 [PHE] 1:1137 [C] 3.5 1:1129 [G] sugar:BB 45.1
O:44 [PHE] 1:1138 [A] 3.67 1:1127 [U] 45.1
O:46 [SER] 1:1130 [C] 3.55 1:1136 [G] sugar:SC 47.2
O:46 [SER] 1:1131 [C] 3.98 1:1134 [C] 47.2
O:47 [PRO] 1:1131 [C] 3.4 1:1134 [C] 39.9
O:47 [PRO] 1:1133 [A] 4.93 39.9
O:113 [LEU] 1:1132 [A] 3.43 18.5
O:115 [ILE] 1:1132 [A] 4.72 44.8
O:119 [PHE] 1:1132 [A] 4.56 47.6
O:135 [LYS] 1:1131 [C] 3.24 1:1134 [C] 52.8
O:135 [LYS] 1:1132 [A] 4.08 52.8
O:135 [LYS] 1:1133 [A] 2.51 52.8
O:145 [ARG] 1:1132 [A] 2.63 base:SC, sugar:SC 50.7
O:145 [ARG] 1:1133 [A] 3.31 50.7
O:146 [PHE] 1:1132 [A] 2.7 sugar:BB 42.3
O:146 [PHE] 1:1133 [A] 3.87 42.3
O:147 [PRO] 1:1132 [A] 3.26 63.8
O:148 [PHE] 1:1132 [A] 3.57 50.9
O:149 [LYS] 1:1132 [A] 3.32 49.3

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group122 6AZ3_O_1 O: 60s ribosomal protein l5, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A3Q8IJC5 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_O_1 7O7Y_BD_B5 0.65 0.93 1.41 0.33 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA compare