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All interfaces > All interologs > Interface groups > group122 > 6AZ3_O_2

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_O
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
O:4 [VAL] 2:1097 [U] 4.11 2:1113 [A] 20.04
O:4 [VAL] 2:1098 [G] 4.07 2:1112 [C] 20.04
O:7 [VAL] 2:1096 [G] 4.74 2:1114 [C] 29.8
O:7 [VAL] 2:1114 [C] 4.67 2:1096 [G] 29.8
O:7 [VAL] 2:1115 [G] 3.89 2:1095 [A] 29.8
O:8 [LYS] 2:1114 [C] 3.9 2:1096 [G] 55.5
O:8 [LYS] 2:1115 [G] 3.24 2:1095 [A] 55.5
O:12 [TYR] 2:1115 [G] 3.72 2:1095 [A] 36.41
O:12 [TYR] 2:1116 [U] 2.43 36.41
O:15 [ARG] 2:1116 [U] 3.43 53.74
O:15 [ARG] 2:1117 [A] 2.84 53.74
O:16 [PHE] 2:1116 [U] 3.52 base/AA stacks 32.64
O:17 [GLN] 2:1116 [U] 2.5 base:BB, base:BB 46.3
O:18 [VAL] 2:1116 [U] 4.61 63.69
O:19 [LYS] 2:1116 [U] 3.35 9.19
O:19 [LYS] 2:1117 [A] 4.31 9.19
O:19 [LYS] 2:1130 [A] 3.22 sugar:SC 9.19
O:19 [LYS] 2:1131 [A] 4.9 9.19
O:22 [ARG] 2:1131 [A] 3.87 base:BB 98.11
O:23 [ARG] 2:1130 [A] 4.36 86.43
O:23 [ARG] 2:1131 [A] 2.27 base/AA stacks 86.43
O:26 [GLY] 2:1131 [A] 3.65 71.79
O:27 [LYS] 2:1131 [A] 3.76 78.49
O:28 [THR] 2:1131 [A] 2.45 base:BB 99.0
O:29 [ASP] 2:1131 [A] 3.04 83.84
O:29 [ASP] 2:1132 [A] 3.53 2:1093 [U] 83.84
O:30 [TYR] 2:1131 [A] 4.87 96.72
O:31 [HIS] 2:1132 [A] 3.8 2:1093 [U] 57.86
O:31 [HIS] 2:1133 [A] 3.19 57.86
O:32 [ALA] 2:1177 [A] 4.26 2:1174 [G] 45.89
O:35 [GLN] 2:1177 [A] 2.87 2:1174 [G] sugar:BB 38.45
O:35 [GLN] 2:1178 [G] 2.53 2:1173 [C] sugar:SC 38.45
O:35 [GLN] 2:1179 [C] 3.65 2:1172 [G] 38.45
O:36 [MET] 2:1176 [A] 4.28 76.79
O:36 [MET] 2:1177 [A] 3.27 2:1174 [G] sugar:BB 76.79
O:37 [VAL] 2:1177 [A] 4.77 2:1174 [G] 77.53
O:38 [LEU] 2:1177 [A] 3.95 2:1174 [G] 52.11
O:38 [LEU] 2:1178 [G] 3.82 2:1173 [C] 52.11
O:38 [LEU] 2:1179 [C] 3.52 2:1172 [G] 52.11
O:39 [GLN] 2:1178 [G] 4.83 2:1173 [C] 90.89
O:40 [ASP] 2:1178 [G] 4.94 2:1173 [C] 41.91
O:48 [LYS] 2:1177 [A] 2.83 2:1174 [G] sugar:SC 62.86
O:48 [LYS] 2:1178 [G] 4.22 2:1173 [C] 62.86
O:136 [LYS] 2:1177 [A] 3.24 2:1174 [G] 36.28
O:136 [LYS] 2:1178 [G] 4.27 2:1173 [C] 36.28
O:149 [LYS] 2:1177 [A] 4.87 2:1174 [G] 49.38
O:151 [ILE] 2:1176 [A] 3.67 81.15
O:151 [ILE] 2:1177 [A] 3.49 2:1174 [G] 81.15
O:152 [LEU] 2:1175 [A] 3.43 72.72
O:152 [LEU] 2:1176 [A] 4.47 72.72
O:154 [VAL] 2:1175 [A] 3.75 66.57
O:156 [LEU] 2:1091 [G] 4.91 2:1135 [C] 67.02
O:156 [LEU] 2:1131 [A] 3.37 67.02
O:158 [ARG] 2:1090 [A] 4.96 2:1136 [U] 51.26
O:158 [ARG] 2:1091 [G] 3.33 2:1135 [C] 51.26
O:158 [ARG] 2:1092 [C] 4.53 2:1134 [G] 51.26
O:159 [THR] 2:1175 [A] 3.4 53.28
O:166 [PHE] 2:1175 [A] 3.74 65.18
O:169 [LEU] 2:1175 [A] 4.79 54.54
O:180 [PRO] 2:1175 [A] 4.29 70.94
O:180 [PRO] 2:1176 [A] 3.3 70.94
O:180 [PRO] 2:1177 [A] 4.49 2:1174 [G] 70.94
O:181 [HIS] 2:1175 [A] 3.26 63.45
O:181 [HIS] 2:1176 [A] 4.07 63.45
O:182 [ARG] 2:1174 [G] 3.4 2:1177 [A] base/AA stacks 59.88
O:182 [ARG] 2:1175 [A] 3.4 59.88
O:182 [ARG] 2:1176 [A] 2.89 59.88
O:184 [ASN] 2:1175 [A] 3.62 39.18
O:185 [ARG] 2:1175 [A] 2.7 51.61

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group122 6AZ3_O_2 O: 60s ribosomal protein l5, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3Q8IJC5 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_O_2 7RYG_N_A 0.22 0.74 3.63 0.0 Ribonuclease H-like compare
6AZ3_O_2 6S0Z_M_A 0.37 0.75 3.35 0.05 Ribonuclease H-like compare
4Y4O_1S_1A 6AZ3_O_2 0.40 0.75 4.24 0.0 Ribonuclease H-like compare
6AZ3_O_2 7K00_n_a 0.46 0.75 2.27 0.05 Ribonuclease H-like compare
1YHQ_N_0 6AZ3_O_2 0.80 0.79 1.52 0.42 Ribonuclease H-like compare
1VQ8_N_0 6AZ3_O_2 0.80 0.79 1.53 0.42 Ribonuclease H-like compare
6AZ3_O_2 7O7Y_BD_B5 0.93 0.92 0.85 0.68 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA compare