RNAprotDB

All interfaces > All interologs > Interface groups > group122 > 6AZ3_O_2 vs 7RYG_N_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6AZ3_O
6AZ3_2
7RYG_N
7RYG_A
Conserved?
O:151 [ILE] 2:1177 [A] N:90 [ALA] A:2374 [A] ✔
O:152 [LEU] 2:1175 [A] N:91 [PHE] A:2372 [A] ✔
O:152 [LEU] 2:1176 [A] N:91 [PHE] A:2373 [A] ✔
O:154 [VAL] 2:1175 [A] N:93 [ARG] A:2372 [A] ✔
O:30 [TYR] 2:1131 [A] N:13 [LYS] A:2330 [A] ✔
O:36 [MET] 2:1177 [A] N:19 [ILE] A:2374 [A] ✔
O:32 [ALA] 2:1177 [A] N:15 [THR] A:2374 [A] ✔
O:48 [LYS] 2:1177 [A] N:24 [ALA] A:2374 [A] ✔
O:39 [GLN] 2:1178 [G] N:22 [LEU] A:2375 [G] ✔
O:35 [GLN] 2:1177 [A] N:18 [HIS] A:2374 [A] ✔
O:35 [GLN] 2:1178 [G] N:18 [HIS] A:2375 [G] ✔
O:35 [GLN] 2:1179 [C] N:18 [HIS] A:2376 [U] ✔
O:156 [LEU] 2:1091 [G] N:95 [GLY] A:2290 [G] ✔
O:31 [HIS] 2:1132 [A] N:14 [SER] A:2331 [A] ✔
O:38 [LEU] 2:1177 [A] N:21 [ALA] A:2374 [A] ❌ 7RYG_N_A
O:38 [LEU] 2:1178 [G] N:21 [ALA] A:2375 [G] ❌ 7RYG_N_A
O:38 [LEU] 2:1179 [C] N:21 [ALA] A:2376 [U] ❌ 7RYG_N_A
O:151 [ILE] 2:1176 [A] N:90 [ALA] A:2373 [A] ❌ 7RYG_N_A
O:28 [THR] 2:1131 [A] N:10 [ARG] A:2330 [A] ❌ 7RYG_N_A
O:36 [MET] 2:1176 [A] N:19 [ILE] A:2373 [A] ❌ 7RYG_N_A
O:48 [LYS] 2:1178 [G] N:24 [ALA] A:2375 [G] ❌ 7RYG_N_A
O:29 [ASP] 2:1131 [A] N:11 [ARG] A:2330 [A] ❌ 7RYG_N_A
O:29 [ASP] 2:1132 [A] N:11 [ARG] A:2331 [A] ❌ 7RYG_N_A
O:156 [LEU] 2:1131 [A] N:95 [GLY] A:2330 [A] ❌ 7RYG_N_A
O:28 [THR] 2:1092 [C] N:10 [ARG] A:2291 [C] ❌ 6AZ3_O_2
O:28 [THR] 2:1130 [A] N:10 [ARG] A:2329 [A] ❌ 6AZ3_O_2
O:28 [THR] 2:1132 [A] N:10 [ARG] A:2331 [A] ❌ 6AZ3_O_2
O:29 [ASP] 2:1092 [C] N:11 [ARG] A:2291 [C] ❌ 6AZ3_O_2
O:29 [ASP] 2:1091 [G] N:11 [ARG] A:2290 [G] ❌ 6AZ3_O_2
O:30 [TYR] 2:1130 [A] N:13 [LYS] A:2329 [A] ❌ 6AZ3_O_2
O:31 [HIS] 2:1131 [A] N:14 [SER] A:2330 [A] ❌ 6AZ3_O_2
O:32 [ALA] 2:1090 [A] N:15 [THR] A:2289 [C] ❌ 6AZ3_O_2
O:35 [GLN] 2:1131 [A] N:18 [HIS] A:2330 [A] ❌ 6AZ3_O_2
O:38 [LEU] 2:1131 [A] N:21 [ALA] A:2330 [A] ❌ 6AZ3_O_2
O:39 [GLN] 2:1177 [A] N:22 [LEU] A:2374 [A] ❌ 6AZ3_O_2
O:39 [GLN] 2:1179 [C] N:22 [LEU] A:2376 [U] ❌ 6AZ3_O_2
O:154 [VAL] 2:1091 [G] N:93 [ARG] A:2290 [G] ❌ 6AZ3_O_2
O:154 [VAL] 2:1090 [A] N:93 [ARG] A:2289 [C] ❌ 6AZ3_O_2
O:31 [HIS] 2:1133 [A] N:14 [SER] A:2332 [A] ❌ 7RYG_A:2332 no longer at interface
O:28 [THR] 2:1093 [U] N:10 [ARG] A:2292 [U] ❌ 6AZ3_2:1093 no longer at interface
O:149 [LYS] 2:1177 [A] N:88 [LYS] A:2374 [A] ❌ 7RYG_N:88 no longer at interface
O:27 [LYS] 2:1131 [A] N:9 [LEU] A:2330 [A] ❌ 7RYG_N:9 no longer at interface
O:166 [PHE] 2:1175 [A] N:103 [LYS] A:2372 [A] ❌ 7RYG_N:103 no longer at interface
O:159 [THR] 2:1175 [A] N:97 [LYS] A:2372 [A] ❌ 7RYG_N:97 no longer at interface
O:37 [VAL] 2:1177 [A] N:20 [ARG] A:2374 [A] ❌ 7RYG_N:20 no longer at interface
O:26 [GLY] 2:1131 [A] N:7 [SER] A:2330 [A] ❌ 7RYG_N:7 no longer at interface
O:169 [LEU] 2:1175 [A] N:106 [ALA] A:2372 [A] ❌ 7RYG_N:106 no longer at interface
O:173 [VAL] 2:1176 [A] N:110 [ARG] A:2373 [A] ❌ 6AZ3_O:173 no longer at interface
O:173 [VAL] 2:1175 [A] N:110 [ARG] A:2372 [A] ❌ 6AZ3_O:173 no longer at interface
O:179 [VAL] 2:1176 [A] N:116 [PHE] A:2373 [A] ❌ 6AZ3_O:179 no longer at interface
O:179 [VAL] 2:1175 [A] N:116 [PHE] A:2372 [A] ❌ 6AZ3_O:179 no longer at interface
O:34 [ARG] 2:1131 [A] N:17 [LEU] A:2330 [A] ❌ 6AZ3_O:34 no longer at interface
O:150 [ALA] 2:1177 [A] N:89 [VAL] A:2374 [A] ❌ 6AZ3_O:150 no longer at interface
O:162 [GLY] 2:1175 [A] N:98 [TYR] A:2372 [A] ❌ 6AZ3_O:162 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.74 3.63 0.00 0.81 0.81 0.74 0.92 0.22 0.15 0.07 0.40


Other pairs involving 6AZ3_O_2 or 7RYG_N_A

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1S_1A 6AZ3_O_2 0.40 0.75 4.24 0.0 Ribonuclease H-like compare
4Y4O_1S_1A 7RYG_N_A 0.56 0.95 3.79 0.47 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6AZ3_O_2 7RYG_N_A 0.22 0.74 3.63 0.0 Ribonuclease H-like compare
6AZ3_O_2 7O7Y_BD_B5 0.93 0.92 0.85 0.68 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA compare
6AZ3_O_2 7K00_n_a 0.46 0.75 2.27 0.05 Ribonuclease H-like compare
6AZ3_O_2 6S0Z_M_A 0.37 0.75 3.35 0.05 Ribonuclease H-like compare
6S0Z_M_A 7RYG_N_A 0.66 0.98 2.44 0.37 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
1YHQ_N_0 6AZ3_O_2 0.80 0.79 1.52 0.42 Ribonuclease H-like compare
1YHQ_N_0 7RYG_N_A 0.17 0.92 5.16 0.05 Ribonuclease H-like compare
1VQ8_N_0 7RYG_N_A 0.17 0.92 5.13 0.05 Ribonuclease H-like compare
1VQ8_N_0 6AZ3_O_2 0.80 0.79 1.53 0.42 Ribonuclease H-like compare