Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6S0Z_M
|
6S0Z_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| M:2 [ILE] | A:2342 [U] | 3.42 | A:2328 [A] | 65.17 | ||
| M:2 [ILE] | A:2343 [U] | 4.08 | A:2327 [A] | 65.17 | ||
| M:3 [SER] | A:2342 [U] | 4.48 | A:2328 [A] | 30.33 | ||
| M:3 [SER] | A:2343 [U] | 3.18 | A:2327 [A] | 30.33 | ||
| M:10 [VAL] | A:2322 [C] | 4.53 | A:2364 [G] | 21.24 | ||
| M:13 [LYS] | A:2361 [U] | 4.93 | 56.75 | |||
| M:14 [ARG] | A:2321 [C] | 3.77 | A:2365 [G] | 80.69 | ||
| M:14 [ARG] | A:2322 [C] | 3.06 | A:2364 [G] | 80.69 | ||
| M:17 [ARG] | A:2322 [C] | 3.89 | A:2364 [G] | 75.2 | ||
| M:17 [ARG] | A:2323 [U] | 2.74 | A:2362 [A] | base:SC | 75.2 | |
| M:17 [ARG] | A:2360 [A] | 3.0 | 75.2 | |||
| M:17 [ARG] | A:2361 [U] | 2.79 | sugar:BB | 75.2 | ||
| M:17 [ARG] | A:2362 [A] | 3.38 | A:2323 [U] | 75.2 | ||
| M:20 [THR] | A:2361 [U] | 3.15 | sugar:SC | 37.46 | ||
| M:21 [ASN] | A:2405 [A] | 4.55 | A:2402 [G] | 64.1 | ||
| M:22 [LEU] | A:2405 [A] | 3.33 | A:2402 [G] | 58.16 | ||
| M:28 [LYS] | A:2405 [A] | 3.6 | A:2402 [G] | 60.5 | ||
| M:28 [LYS] | A:2406 [G] | 4.07 | A:2401 [C] | 60.5 | ||
| M:92 [ILE] | A:2405 [A] | 4.81 | A:2402 [G] | 82.13 | ||
| M:93 [VAL] | A:2405 [A] | 3.93 | A:2402 [G] | 70.09 | ||
| M:94 [PHE] | A:2403 [A] | 3.4 | 83.52 | |||
| M:94 [PHE] | A:2404 [A] | 4.25 | 83.52 | |||
| M:96 [ARG] | A:2320 [C] | 3.7 | A:2366 [G] | 99.0 | ||
| M:96 [ARG] | A:2321 [C] | 2.96 | A:2365 [G] | 99.0 | ||
| M:96 [ARG] | A:2403 [A] | 3.76 | 99.0 | |||
| M:98 [GLY] | A:2321 [C] | 4.99 | A:2365 [G] | 65.99 | ||
| M:99 [TYR] | A:2321 [C] | 4.35 | A:2365 [G] | 46.77 | ||
| M:100 [LEU] | A:2320 [C] | 3.55 | A:2366 [G] | 48.22 | ||
| M:100 [LEU] | A:2321 [C] | 2.99 | A:2365 [G] | 48.22 | ||
| M:101 [TYR] | A:2403 [A] | 3.39 | base/AA stacks | 85.31 | ||
| M:110 [GLU] | A:2403 [A] | 4.97 | 75.31 | |||
| M:113 [ARG] | A:2403 [A] | 2.74 | base:SC | 94.96 | ||
| M:113 [ARG] | A:2404 [A] | 3.86 | 94.96 | |||
| M:119 [PHE] | A:2403 [A] | 4.78 | 78.54 | |||
| M:119 [PHE] | A:2404 [A] | 3.74 | 78.54 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group122 | 6S0Z_M_A | M: 50s ribosomal protein l18, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) | W8TRE0 | Ribonuclease H-like | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1S_1A | 6S0Z_M_A | 0.62 | 0.97 | 2.94 | 0.38 | Ribonuclease H-like | Bacterial large subunit ribosomal RNA | compare |
| 6AZ3_O_2 | 6S0Z_M_A | 0.37 | 0.75 | 3.35 | 0.05 | Ribonuclease H-like | compare | |
| 6S0Z_M_A | 7RYG_N_A | 0.66 | 0.98 | 2.44 | 0.37 | Ribonuclease H-like | Bacterial large subunit ribosomal RNA | compare |
| 6S0Z_M_A | 7K00_n_a | 0.68 | 0.97 | 2.72 | 0.43 | Ribonuclease H-like | Bacterial large subunit ribosomal RNA | compare |
| 6S0Z_M_A | 7O7Y_BD_B5 | 0.26 | 0.89 | 4.78 | 0.05 | Ribonuclease H-like | compare | |
| 1YHQ_N_0 | 6S0Z_M_A | 0.30 | 0.91 | 3.99 | 0.14 | Ribonuclease H-like | compare | |
| 1VQ8_N_0 | 6S0Z_M_A | 0.30 | 0.91 | 3.95 | 0.14 | Ribonuclease H-like | compare |