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All interfaces > All interologs > Interface groups > group122 > 7K00_n_a

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_n
7K00_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
n:6 [ALA] a:2295 [C] 4.7 a:2337 [G] 18.65
n:9 [ARG] a:2295 [C] 2.8 a:2337 [G] 47.71
n:9 [ARG] a:2296 [U] 3.96 a:2335 [A] 47.71
n:9 [ARG] a:2334 [U] 3.92 47.71
n:9 [ARG] a:2335 [A] 4.16 a:2296 [U] 47.71
n:10 [ARG] a:2294 [G] 3.27 a:2338 [C] 82.11
n:10 [ARG] a:2295 [C] 3.07 a:2337 [G] 82.11
n:12 [THR] a:2334 [U] 3.2 4.27
n:13 [ARG] a:2334 [U] 2.81 sugar:SC 81.93
n:13 [ARG] a:2335 [A] 3.32 a:2296 [U] 81.93
n:13 [ARG] a:2336 [A] 2.99 81.93
n:14 [ALA] a:2378 [A] 4.35 a:2375 [G] 46.62
n:16 [ARG] a:2334 [U] 3.43 34.11
n:17 [LYS] a:2378 [A] 4.51 a:2375 [G] 57.89
n:17 [LYS] a:2379 [G] 3.38 a:2374 [C] 57.89
n:17 [LYS] a:2380 [C] 2.83 a:2373 [G] 57.89
n:18 [LEU] a:2378 [A] 3.28 a:2375 [G] 57.57
n:20 [GLU] a:2380 [C] 4.65 a:2373 [G] 33.65
n:21 [LEU] a:2378 [A] 3.78 a:2375 [G] 58.8
n:21 [LEU] a:2379 [G] 3.46 a:2374 [C] 58.8
n:21 [LEU] a:2380 [C] 4.64 a:2373 [G] 58.8
n:23 [ALA] a:2378 [A] 4.3 a:2375 [G] 12.83
n:91 [SER] a:2378 [A] 3.39 a:2375 [G] 52.24
n:92 [PHE] a:2376 [A] 3.49 79.36
n:92 [PHE] a:2377 [A] 3.8 79.36
n:94 [ARG] a:2293 [G] 3.29 a:2339 [C] 86.33
n:94 [ARG] a:2294 [G] 2.77 a:2338 [C] 86.33
n:94 [ARG] a:2376 [A] 3.7 86.33
n:96 [GLY] a:2294 [G] 4.12 a:2338 [C] 56.71
n:97 [PHE] a:2294 [G] 4.87 a:2338 [C] 42.94
n:98 [GLN] a:2293 [G] 2.93 a:2339 [C] sugar:SC 40.15
n:98 [GLN] a:2294 [G] 3.15 a:2338 [C] 40.15
n:99 [TYR] a:2376 [A] 3.27 base/AA stacks 72.7
n:111 [ARG] a:2376 [A] 2.87 base:SC 87.45
n:111 [ARG] a:2377 [A] 3.29 sugar:SC 87.45
n:117 [PHE] a:2376 [A] 4.55 66.82
n:117 [PHE] a:2377 [A] 2.47 sugar:BB 66.82

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group122 7K00_n_a n: 50s ribosomal protein l18, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) P0C018 Ribonuclease H-like Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1S_1A 7K00_n_a 0.77 0.96 1.65 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
6AZ3_O_2 7K00_n_a 0.46 0.75 2.27 0.05 Ribonuclease H-like compare
6S0Z_M_A 7K00_n_a 0.68 0.97 2.72 0.43 Ribonuclease H-like Bacterial large subunit ribosomal RNA compare
1YHQ_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare
1VQ8_N_0 7K00_n_a 0.41 0.9 3.76 0.1 Ribonuclease H-like compare