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All interfaces > All interologs > Interface groups > group122 > 7O7Y_BD_B5

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

7O7Y_BD
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BD:3 [PHE] B5:1692 [G] 3.22 B5:1716 [C] 55.1
BD:3 [PHE] B5:1693 [U] 4.5 B5:1694 [C] 55.1
BD:3 [PHE] B5:1694 [C] 2.3 B5:1693 [U] base:BB base/AA stacks 55.1
BD:3 [PHE] B5:1716 [C] 3.52 B5:1692 [G] sugar:BB 55.1
BD:3 [PHE] B5:1717 [C] 3.46 B5:1691 [G] 55.1
BD:4 [VAL] B5:1717 [C] 3.75 B5:1691 [G] 38.2
BD:4 [VAL] B5:1718 [PSU] 4.75 B5:1690 [A] 38.2
BD:4 [VAL] B5:3992 [G] 3.22 B5:4008 [C] 38.2
BD:4 [VAL] B5:3993 [G] 4.39 B5:4007 [C] 38.2
BD:5 [LYS] B5:1717 [C] 3.17 B5:1691 [G] 49.7
BD:5 [LYS] B5:1718 [PSU] 3.35 B5:1690 [A] 49.7
BD:6 [VAL] B5:1717 [C] 4.32 B5:1691 [G] 30.8
BD:6 [VAL] B5:1718 [PSU] 3.12 B5:1690 [A] 30.8
BD:7 [VAL] B5:3991 [G] 4.72 B5:4009 [C] 31.0
BD:7 [VAL] B5:4009 [C] 3.52 B5:3991 [G] 31.0
BD:7 [VAL] B5:4010 [G] 4.58 B5:3990 [A] 31.0
BD:8 [LYS] B5:4009 [C] 3.93 B5:3991 [G] 70.9
BD:8 [LYS] B5:4010 [G] 3.41 B5:3990 [A] 70.9
BD:10 [LYS] B5:1680 [G] 4.78 60.0
BD:10 [LYS] B5:1681 [A] 3.2 60.0
BD:10 [LYS] B5:1720 [PSU] 4.64 B5:1688 [A] 60.0
BD:11 [ALA] B5:1681 [A] 3.59 76.1
BD:11 [ALA] B5:1682 [A] 3.79 76.1
BD:12 [TYR] B5:4010 [G] 3.83 B5:3990 [A] 50.9
BD:12 [TYR] B5:4011 [U] 2.71 50.9
BD:14 [LYS] B5:1681 [A] 3.59 40.8
BD:15 [ARG] B5:1681 [A] 3.89 67.4
BD:15 [ARG] B5:1682 [A] 3.3 base/AA stacks 67.4
BD:15 [ARG] B5:1729 [U] 4.86 B5:1677 [A] 67.4
BD:15 [ARG] B5:1730 [U] 4.35 67.4
BD:15 [ARG] B5:4011 [U] 3.69 67.4
BD:16 [TYR] B5:4011 [U] 2.94 base/AA stacks 49.1
BD:17 [GLN] B5:4011 [U] 2.38 base:BB, base:BB 71.6
BD:18 [VAL] B5:4011 [U] 4.54 66.0
BD:19 [LYS] B5:4011 [U] 3.68 60.7
BD:19 [LYS] B5:4012 [G] 4.42 60.7
BD:19 [LYS] B5:4025 [A] 2.82 sugar:SC 60.7
BD:19 [LYS] B5:4026 [A] 3.0 60.7
BD:22 [ARG] B5:4026 [A] 4.46 97.0
BD:23 [ARG] B5:4025 [A] 4.92 91.2
BD:23 [ARG] B5:4026 [A] 2.63 base/AA stacks 91.2
BD:26 [GLY] B5:4026 [A] 3.38 78.7
BD:27 [LYS] B5:4026 [A] 3.98 75.8
BD:28 [THR] B5:4026 [A] 2.73 base:BB 99.0
BD:29 [ASP] B5:4026 [A] 3.6 base/AA stacks 89.9
BD:29 [ASP] B5:4027 [A] 4.21 B5:3988 [U] 89.9
BD:30 [TYR] B5:4026 [A] 4.86 94.3
BD:31 [TYR] B5:3984 [G] 4.22 B5:4032 [C] 53.2
BD:31 [TYR] B5:4027 [A] 3.73 B5:3988 [U] 53.2
BD:31 [TYR] B5:4028 [A] 3.52 53.2
BD:32 [ALA] B5:4071 [A] 3.57 B5:4068 [G] 73.5
BD:35 [ARG] B5:3984 [G] 4.59 B5:4032 [C] 64.1
BD:35 [ARG] B5:4028 [A] 4.89 64.1
BD:35 [ARG] B5:4071 [A] 3.11 B5:4068 [G] sugar:BB 64.1
BD:35 [ARG] B5:4072 [G] 3.33 B5:4067 [U] 64.1
BD:36 [LEU] B5:4070 [A] 4.83 84.0
BD:36 [LEU] B5:4071 [A] 3.06 B5:4068 [G] sugar:BB 84.0
BD:37 [VAL] B5:4071 [A] 4.94 B5:4068 [G] 79.8
BD:40 [ASP] B5:4072 [G] 4.9 B5:4067 [U] 71.1
BD:43 [LYS] B5:1756 [U] 3.36 B5:1761 [U] 82.7
BD:43 [LYS] B5:1757 [G] 2.99 82.7
BD:43 [LYS] B5:1762 [G] 3.3 B5:1755 [C] 82.7
BD:44 [TYR] B5:1762 [G] 3.36 B5:1755 [C] 68.7
BD:44 [TYR] B5:1763 [G] 3.47 B5:1753 [C] 68.7
BD:45 [ASN] B5:1762 [G] 3.94 B5:1755 [C] 65.3
BD:45 [ASN] B5:1763 [G] 4.53 B5:1753 [C] 65.3
BD:46 [THR] B5:1756 [U] 3.84 B5:1761 [U] 52.1
BD:46 [THR] B5:1757 [G] 3.95 52.1
BD:46 [THR] B5:1758 [G] 4.51 52.1
BD:46 [THR] B5:1761 [U] 4.86 B5:1756 [U] 52.1
BD:46 [THR] B5:1762 [G] 3.87 B5:1755 [C] 52.1
BD:47 [PRO] B5:1758 [G] 4.06 47.9
BD:47 [PRO] B5:1759 [C] 4.01 47.9
BD:48 [LYS] B5:4071 [A] 3.08 B5:4068 [G] sugar:SC 96.3
BD:48 [LYS] B5:4072 [G] 3.08 B5:4067 [U] 96.3
BD:49 [TYR] B5:1758 [G] 2.94 base:SC 70.3
BD:49 [TYR] B5:1759 [C] 4.23 70.3
BD:113 [PHE] B5:1758 [G] 3.35 base:BB base/AA stacks 41.3
BD:115 [MET] B5:1758 [G] 3.09 68.8
BD:138 [GLN] B5:1759 [C] 4.91 5.0
BD:139 [PRO] B5:1758 [G] 3.66 34.2
BD:139 [PRO] B5:1759 [C] 3.82 34.2
BD:140 [GLY] B5:1758 [G] 2.58 sugar:BB 71.7
BD:140 [GLY] B5:1759 [C] 3.07 71.7
BD:141 [ALA] B5:1758 [G] 3.72 72.1
BD:142 [PHE] B5:1758 [G] 3.67 69.5
BD:143 [THR] B5:1758 [G] 4.79 58.4
BD:145 [TYR] B5:4070 [A] 3.98 77.1
BD:145 [TYR] B5:4071 [A] 3.49 B5:4068 [G] 77.1
BD:145 [TYR] B5:4072 [G] 4.49 B5:4067 [U] 77.1
BD:146 [LEU] B5:4069 [A] 3.62 84.5
BD:146 [LEU] B5:4070 [A] 4.3 84.5
BD:148 [ALA] B5:4069 [A] 3.97 81.6
BD:150 [LEU] B5:3986 [G] 4.68 B5:4030 [C] 72.9
BD:150 [LEU] B5:4026 [A] 3.37 72.9
BD:151 [ALA] B5:3986 [G] 4.77 B5:4030 [C] 44.4
BD:152 [ARG] B5:3985 [A] 3.29 B5:4031 [U] 74.0
BD:152 [ARG] B5:3986 [G] 3.83 B5:4030 [C] 74.0
BD:153 [THR] B5:4069 [A] 3.31 74.5
BD:160 [PHE] B5:4069 [A] 3.61 82.5
BD:174 [PRO] B5:4069 [A] 4.38 84.4
BD:174 [PRO] B5:4070 [A] 3.23 84.4
BD:174 [PRO] B5:4071 [A] 4.27 B5:4068 [G] 84.4
BD:175 [HIS] B5:4069 [A] 3.3 84.0
BD:175 [HIS] B5:4070 [A] 4.02 84.0
BD:176 [SER] B5:4069 [A] 3.26 sugar:BB 75.9
BD:176 [SER] B5:4070 [A] 4.63 75.9
BD:178 [LYS] B5:4069 [A] 3.48 67.6
BD:179 [ARG] B5:4068 [G] 4.6 B5:4071 [A] 69.6
BD:179 [ARG] B5:4069 [A] 2.7 69.6
BD:268 [ARG] B5:1066 [A] 4.49 B5:1077 [U] 6.1
BD:268 [ARG] B5:1067 [C] 3.34 B5:1076 [G] 6.1
BD:268 [ARG] B5:1068 [U] 3.81 B5:1075 [A] 6.1
BD:269 [PRO] B5:1066 [A] 4.44 B5:1077 [U] 2.9
BD:271 [MET] B5:1067 [C] 4.07 B5:1076 [G] 48.1
BD:271 [MET] B5:1068 [U] 4.46 B5:1075 [A] 48.1
BD:272 [SER] B5:1077 [U] 4.66 B5:1066 [A] 71.0
BD:272 [SER] B5:1078 [G] 3.05 B5:1065 [G] sugar:SC 71.0
BD:274 [ALA] B5:1077 [U] 3.13 B5:1066 [A] 53.4
BD:274 [ALA] B5:1078 [G] 3.33 B5:1065 [G] 53.4
BD:275 [GLN] B5:1066 [A] 4.19 B5:1077 [U] 54.2
BD:275 [GLN] B5:1067 [C] 4.77 B5:1076 [G] 54.2
BD:275 [GLN] B5:1077 [U] 3.05 B5:1066 [A] base:SC 54.2
BD:275 [GLN] B5:1078 [G] 3.24 B5:1065 [G] base/AA stacks 54.2
BD:278 [ASP] B5:1076 [G] 2.67 B5:1067 [C] sugar:SC, sugar:SC 26.9
BD:278 [ASP] B5:1077 [U] 3.23 B5:1066 [A] 26.9
BD:279 [ARG] B5:1068 [U] 2.95 B5:1075 [A] 53.5
BD:279 [ARG] B5:1069 [G] 3.08 B5:1074 [C] 53.5
BD:282 [GLN] B5:1068 [U] 2.8 B5:1075 [A] base:SC, sugar:SC 36.1
BD:282 [GLN] B5:1069 [G] 2.83 B5:1074 [C] sugar:SC 36.1
BD:282 [GLN] B5:1075 [A] 4.55 B5:1068 [U] 36.1
BD:282 [GLN] B5:1076 [G] 3.09 B5:1067 [C] sugar:SC 36.1
BD:283 [LYS] B5:1068 [U] 4.74 B5:1075 [A] 80.5
BD:283 [LYS] B5:1069 [G] 3.47 B5:1074 [C] 80.5
BD:283 [LYS] B5:1070 [U] 4.19 80.5
BD:286 [SER] B5:1069 [G] 3.39 B5:1074 [C] 19.4
BD:286 [SER] B5:1070 [U] 2.24 base:SC 19.4
BD:286 [SER] B5:1071 [C] 2.62 19.4
BD:287 [PHE] B5:1070 [U] 4.23 15.1
BD:289 [ARG] B5:1071 [C] 3.21 base/AA stacks 36.3
BD:290 [ALA] B5:1070 [U] 3.92 45.2
BD:293 [ARG] B5:1071 [C] 3.57 4.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group122 7O7Y_BD_B5 BD: Ribosomal_l18_c domain-containing protein, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SYJ6 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_0 7O7Y_BD_B5 0.71 0.94 3.15 0.42 Ribonuclease H-like compare
1YHQ_N_0 7O7Y_BD_B5 0.71 0.94 3.12 0.42 Ribonuclease H-like compare
4Y4O_1S_1A 7O7Y_BD_B5 0.36 0.89 4.42 0.04 Ribonuclease H-like compare
6AZ3_O_1 7O7Y_BD_B5 0.65 0.93 1.41 0.33 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA compare
6AZ3_O_2 7O7Y_BD_B5 0.93 0.92 0.85 0.68 Ribonuclease H-like Eukaryotic large subunit ribosomal RNA compare
6S0Z_M_A 7O7Y_BD_B5 0.26 0.89 4.78 0.05 Ribonuclease H-like compare