Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_N
|
7RYG_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| N:10 [ARG] | A:2291 [C] | 3.41 | A:2333 [G] | 62.6 | ||
| N:10 [ARG] | A:2292 [U] | 3.73 | A:2331 [A] | 62.6 | ||
| N:10 [ARG] | A:2329 [A] | 4.43 | 62.6 | |||
| N:10 [ARG] | A:2331 [A] | 4.08 | A:2292 [U] | 62.6 | ||
| N:11 [ARG] | A:2290 [G] | 3.67 | A:2334 [C] | 88.5 | ||
| N:11 [ARG] | A:2291 [C] | 3.21 | A:2333 [G] | 88.5 | ||
| N:13 [LYS] | A:2329 [A] | 4.18 | 0.2 | |||
| N:13 [LYS] | A:2330 [A] | 3.26 | 0.2 | |||
| N:14 [SER] | A:2330 [A] | 3.19 | base:SC | 80.6 | ||
| N:14 [SER] | A:2331 [A] | 4.47 | A:2292 [U] | 80.6 | ||
| N:15 [THR] | A:2289 [C] | 5.0 | A:2335 [G] | 59.9 | ||
| N:15 [THR] | A:2374 [A] | 4.53 | A:2371 [G] | 59.9 | ||
| N:17 [LEU] | A:2330 [A] | 3.31 | 34.9 | |||
| N:18 [HIS] | A:2330 [A] | 3.69 | base:SC | 59.9 | ||
| N:18 [HIS] | A:2374 [A] | 3.71 | A:2371 [G] | 59.9 | ||
| N:18 [HIS] | A:2375 [G] | 3.04 | A:2370 [C] | sugar:SC | 59.9 | |
| N:18 [HIS] | A:2376 [U] | 4.29 | A:2369 [A] | 59.9 | ||
| N:19 [ILE] | A:2374 [A] | 4.04 | A:2371 [G] | 62.8 | ||
| N:21 [ALA] | A:2330 [A] | 4.26 | 61.3 | |||
| N:22 [LEU] | A:2374 [A] | 4.04 | A:2371 [G] | 64.7 | ||
| N:22 [LEU] | A:2375 [G] | 4.07 | A:2370 [C] | 64.7 | ||
| N:22 [LEU] | A:2376 [U] | 4.43 | A:2369 [A] | 64.7 | ||
| N:24 [ALA] | A:2374 [A] | 4.57 | A:2371 [G] | 66.6 | ||
| N:89 [VAL] | A:2374 [A] | 4.9 | A:2371 [G] | 80.1 | ||
| N:90 [ALA] | A:2374 [A] | 4.19 | A:2371 [G] | 77.8 | ||
| N:91 [PHE] | A:2372 [A] | 3.57 | 91.9 | |||
| N:91 [PHE] | A:2373 [A] | 4.14 | 91.9 | |||
| N:93 [ARG] | A:2289 [C] | 3.05 | A:2335 [G] | 97.9 | ||
| N:93 [ARG] | A:2290 [G] | 3.1 | A:2334 [C] | 97.9 | ||
| N:93 [ARG] | A:2372 [A] | 4.23 | 97.9 | |||
| N:95 [GLY] | A:2290 [G] | 4.41 | A:2334 [C] | 64.0 | ||
| N:98 [TYR] | A:2372 [A] | 3.37 | base/AA stacks | 91.1 | ||
| N:110 [ARG] | A:2372 [A] | 3.04 | base:SC | 96.5 | ||
| N:110 [ARG] | A:2373 [A] | 3.9 | sugar:SC | 96.5 | ||
| N:116 [PHE] | A:2372 [A] | 4.73 | 76.0 | |||
| N:116 [PHE] | A:2373 [A] | 2.02 | sugar:SC | 76.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group122 | 7RYG_N_A | N: 50s ribosomal protein l18, Acinetobacter baumannii (strain ab0057) (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | B7IA23 | Ribonuclease H-like | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1S_1A | 7RYG_N_A | 0.56 | 0.95 | 3.79 | 0.47 | Ribonuclease H-like | Bacterial large subunit ribosomal RNA | compare |
| 6AZ3_O_2 | 7RYG_N_A | 0.22 | 0.74 | 3.63 | 0.0 | Ribonuclease H-like | compare | |
| 6S0Z_M_A | 7RYG_N_A | 0.66 | 0.98 | 2.44 | 0.37 | Ribonuclease H-like | Bacterial large subunit ribosomal RNA | compare |
| 1YHQ_N_0 | 7RYG_N_A | 0.17 | 0.92 | 5.16 | 0.05 | Ribonuclease H-like | compare | |
| 1VQ8_N_0 | 7RYG_N_A | 0.17 | 0.92 | 5.13 | 0.05 | Ribonuclease H-like | compare |