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All interfaces > All interologs > Interface groups > group123 > 1VQ8_N_9

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_N
1VQ8_9
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
N:1 [ALA] 9:3011 [A] 3.63 9:3068 [G] 69.0
N:1 [ALA] 9:3014 [G] 3.02 9:3067 [C] base:BB 69.0
N:1 [ALA] 9:3015 [C] 3.5 9:3066 [G] 69.0
N:1 [ALA] 9:3067 [C] 4.67 9:3014 [G] 69.0
N:1 [ALA] 9:3068 [G] 3.48 9:3011 [A] 69.0
N:2 [THR] 9:3068 [G] 3.99 9:3011 [A] 38.6
N:3 [GLY] 9:3011 [A] 2.69 9:3068 [G] base:BB 34.8
N:3 [GLY] 9:3068 [G] 3.49 9:3011 [A] 34.8
N:3 [GLY] 9:3069 [U] 4.69 9:3112 [U] 34.8
N:4 [PRO] 9:3011 [A] 3.46 9:3068 [G] 34.3
N:4 [PRO] 9:3068 [G] 3.93 9:3011 [A] 34.3
N:4 [PRO] 9:3069 [U] 2.97 9:3112 [U] 34.3
N:5 [ARG] 9:3011 [A] 4.79 9:3068 [G] 45.3
N:6 [TYR] 9:3011 [A] 3.08 9:3068 [G] base:BB 37.9
N:6 [TYR] 9:3014 [G] 4.5 9:3067 [C] 37.9
N:8 [VAL] 9:3010 [C] 4.51 9:3013 [A] 66.1
N:8 [VAL] 9:3011 [A] 3.3 9:3068 [G] 66.1
N:8 [VAL] 9:3013 [A] 4.97 9:3010 [C] 66.1
N:8 [VAL] 9:3014 [G] 3.88 9:3067 [C] 66.1
N:9 [PRO] 9:3010 [C] 4.86 9:3013 [A] 28.2
N:10 [MET] 9:3010 [C] 3.19 9:3013 [A] 54.4
N:11 [ARG] 9:3007 [G] 3.48 9:3116 [C] base:SC 78.7
N:11 [ARG] 9:3008 [G] 2.42 9:3115 [C] base:SC 78.7
N:11 [ARG] 9:3009 [C] 3.33 9:3114 [G] 78.7
N:11 [ARG] 9:3010 [C] 2.97 9:3013 [A] base:BB 78.7
N:11 [ARG] 9:3013 [A] 4.01 9:3010 [C] 78.7
N:11 [ARG] 9:3114 [G] 2.82 9:3009 [C] base:SC 78.7
N:11 [ARG] 9:3115 [C] 3.24 9:3008 [G] 78.7
N:11 [ARG] 9:3116 [C] 4.72 9:3007 [G] 78.7
N:12 [ARG] 9:3006 [C] 2.89 9:3117 [G] 98.7
N:12 [ARG] 9:3007 [G] 2.97 9:3116 [C] 98.7
N:14 [ARG] 9:3010 [C] 4.98 9:3013 [A] 83.0
N:14 [ARG] 9:3011 [A] 4.56 9:3068 [G] 83.0
N:14 [ARG] 9:3013 [A] 3.06 9:3010 [C] base:SC 83.0
N:14 [ARG] 9:3014 [G] 3.9 9:3067 [C] 83.0
N:17 [ARG] 9:3004 [G] 4.51 9:3119 [C] 65.3
N:17 [ARG] 9:3005 [G] 2.5 9:3118 [C] 65.3
N:17 [ARG] 9:3006 [C] 3.28 9:3117 [G] 65.3
N:17 [ARG] 9:3007 [G] 4.03 9:3116 [C] 65.3
N:18 [THR] 9:3007 [G] 2.72 9:3116 [C] 99.0
N:20 [TYR] 9:3007 [G] 4.87 9:3116 [C] 98.6
N:20 [TYR] 9:3008 [G] 2.71 9:3115 [C] 98.6
N:20 [TYR] 9:3010 [C] 3.55 9:3013 [A] 98.6
N:23 [ARG] 9:3007 [G] 2.91 9:3116 [C] 98.9
N:23 [ARG] 9:3008 [G] 2.64 9:3115 [C] 98.9
N:33 [ARG] 9:3006 [C] 2.57 9:3117 [G] sugar:SC 94.7
N:33 [ARG] 9:3007 [G] 3.29 9:3116 [C] 94.7
N:35 [VAL] 9:3005 [G] 4.35 9:3118 [C] 91.4
N:35 [VAL] 9:3006 [C] 3.45 9:3117 [G] 91.4
N:37 [ARG] 9:3005 [G] 3.35 9:3118 [C] 96.3
N:37 [ARG] 9:3006 [C] 2.67 9:3117 [G] 96.3
N:37 [ARG] 9:3007 [G] 4.12 9:3116 [C] 96.3
N:38 [LYS] 9:3028 [U] 4.34 9:3054 [A] 50.3
N:38 [LYS] 9:3047 [A] 3.9 9:3033 [U] 50.3
N:38 [LYS] 9:3048 [C] 3.24 9:3032 [G] 50.3
N:39 [SER] 9:3027 [C] 2.9 9:3055 [U] 87.3
N:39 [SER] 9:3028 [U] 2.5 9:3054 [A] 87.3
N:40 [ASN] 9:3028 [U] 3.39 9:3054 [A] 72.7
N:40 [ASN] 9:3029 [C] 2.91 9:3053 [G] 72.7
N:40 [ASN] 9:3030 [C] 3.74 9:3050 [G] 72.7
N:40 [ASN] 9:3050 [G] 3.82 9:3030 [C] 72.7
N:40 [ASN] 9:3051 [A] 3.96 9:3052 [A] 72.7
N:41 [LYS] 9:3025 [G] 4.78 9:3003 [A] 64.6
N:41 [LYS] 9:3026 [C] 3.75 9:3022 [G] 64.6
N:41 [LYS] 9:3027 [C] 3.56 9:3055 [U] 64.6
N:41 [LYS] 9:3028 [U] 3.93 9:3054 [A] base:SC 64.6
N:41 [LYS] 9:3051 [A] 3.3 9:3052 [A] 64.6
N:42 [HIS] 9:3026 [C] 2.82 9:3022 [G] 63.1
N:42 [HIS] 9:3027 [C] 3.12 9:3055 [U] 63.1
N:44 [ARG] 9:3004 [G] 2.53 9:3119 [C] base:SC, sugar:SC 38.3
N:44 [ARG] 9:3005 [G] 3.3 9:3118 [C] 38.3
N:44 [ARG] 9:3120 [A] 4.3 38.3
N:46 [GLN] 9:3004 [G] 4.33 9:3119 [C] 93.5
N:46 [GLN] 9:3005 [G] 2.49 9:3118 [C] base:SC, sugar:SC 93.5
N:46 [GLN] 9:3006 [C] 3.6 9:3117 [G] 93.5
N:46 [GLN] 9:3119 [C] 4.0 9:3004 [G] base:SC 93.5
N:48 [VAL] 9:3006 [C] 3.39 9:3117 [G] 74.9
N:52 [PRO] 9:3008 [G] 4.01 9:3115 [C] 1.3
N:53 [ASN] 9:3007 [G] 2.95 9:3116 [C] base:BB 28.4
N:53 [ASN] 9:3008 [G] 3.58 9:3115 [C] 28.4
N:53 [ASN] 9:3116 [C] 4.42 9:3007 [G] 28.4
N:53 [ASN] 9:3117 [G] 3.69 9:3006 [C] 28.4
N:54 [GLY] 9:3007 [G] 3.35 9:3116 [C] 91.4
N:54 [GLY] 9:3008 [G] 3.48 9:3115 [C] 91.4
N:54 [GLY] 9:3117 [G] 4.0 9:3006 [C] 91.4
N:55 [ASP] 9:3006 [C] 2.97 9:3117 [G] sugar:SC 99.0
N:55 [ASP] 9:3007 [G] 2.77 9:3116 [C] sugar:BB 99.0
N:55 [ASP] 9:3117 [G] 2.91 9:3006 [C] base:BB 99.0
N:55 [ASP] 9:3118 [C] 3.61 9:3005 [G] 99.0
N:56 [ASP] 9:3117 [G] 4.82 9:3006 [C] 37.8
N:56 [ASP] 9:3118 [C] 2.89 9:3005 [G] sugar:SC 37.8
N:57 [THR] 9:3005 [G] 3.31 9:3118 [C] base:SC 77.7
N:57 [THR] 9:3118 [C] 3.06 9:3005 [G] sugar:BB 77.7
N:57 [THR] 9:3119 [C] 3.52 9:3004 [G] 77.7
N:60 [SER] 9:3119 [C] 3.23 9:3004 [G] sugar:SC 68.7
N:60 [SER] 9:3120 [A] 4.16 68.7
N:62 [HIS] 9:3027 [C] 4.9 9:3055 [U] 53.0
N:74 [PRO] 9:3050 [G] 3.87 9:3030 [C] 70.2
N:74 [PRO] 9:3051 [A] 4.78 9:3052 [A] 70.2
N:76 [GLY] 9:3049 [G] 3.18 9:3031 [C] 62.1
N:76 [GLY] 9:3050 [G] 4.04 9:3030 [C] 62.1
N:77 [ASN] 9:3049 [G] 3.35 9:3031 [C] 93.0
N:77 [ASN] 9:3050 [G] 3.14 9:3030 [C] 93.0
N:78 [MET] 9:3048 [C] 3.99 9:3032 [G] 60.9
N:78 [MET] 9:3049 [G] 2.85 9:3031 [C] 60.9
N:79 [PRO] 9:3049 [G] 4.68 9:3031 [C] 79.2
N:103 [ASP] 9:3006 [C] 4.93 9:3117 [G] 96.3
N:103 [ASP] 9:3007 [G] 4.77 9:3116 [C] 96.3
N:107 [ASN] 9:3047 [A] 3.84 9:3033 [U] 36.6
N:108 [SER] 9:3046 [C] 2.98 47.8
N:108 [SER] 9:3047 [A] 2.97 9:3033 [U] 47.8
N:110 [THR] 9:3036 [C] 4.96 59.6
N:110 [THR] 9:3037 [C] 2.86 9:3043 [G] 59.6
N:110 [THR] 9:3046 [C] 4.22 59.6
N:110 [THR] 9:3047 [A] 3.18 9:3033 [U] 59.6
N:111 [PRO] 9:3036 [C] 2.59 sugar:BB 71.4
N:111 [PRO] 9:3037 [C] 3.84 9:3043 [G] 71.4
N:112 [GLY] 9:3036 [C] 3.64 70.8
N:113 [SER] 9:3036 [C] 4.8 77.9
N:113 [SER] 9:3047 [A] 3.52 9:3033 [U] 77.9
N:113 [SER] 9:3048 [C] 3.53 9:3032 [G] 77.9
N:114 [LYS] 9:3047 [A] 4.87 9:3033 [U] 76.2
N:114 [LYS] 9:3048 [C] 2.96 9:3032 [G] 76.2
N:114 [LYS] 9:3049 [G] 3.54 9:3031 [C] 76.2
N:115 [VAL] 9:3048 [C] 4.82 9:3032 [G] 63.0
N:141 [ARG] 9:3035 [C] 3.02 base:SC, base:SC 89.7
N:141 [ARG] 9:3036 [C] 3.39 base/AA stacks 89.7
N:141 [ARG] 9:3048 [C] 3.02 9:3032 [G] sugar:SC 89.7
N:141 [ARG] 9:3049 [G] 4.82 9:3031 [C] 89.7
N:146 [HIS] 9:3034 [A] 3.59 87.4
N:146 [HIS] 9:3035 [C] 3.44 87.4
N:146 [HIS] 9:3048 [C] 3.99 9:3032 [G] 87.4
N:146 [HIS] 9:3049 [G] 2.95 9:3031 [C] 87.4
N:147 [ILE] 9:3034 [A] 4.79 88.6
N:147 [ILE] 9:3049 [G] 3.12 9:3031 [C] 88.6
N:147 [ILE] 9:3050 [G] 2.97 9:3030 [C] 88.6
N:150 [TYR] 9:3032 [G] 4.56 9:3048 [C] 49.3
N:150 [TYR] 9:3034 [A] 3.34 base/AA stacks 49.3
N:150 [TYR] 9:3049 [G] 4.01 9:3031 [C] 49.3
N:153 [GLN] 9:3034 [A] 3.24 sugar:SC 3.4
N:158 [LEU] 9:3049 [G] 3.85 9:3031 [C] 54.0
N:158 [LEU] 9:3050 [G] 3.85 9:3030 [C] 54.0
N:158 [LEU] 9:3051 [A] 4.34 9:3052 [A] 54.0
N:159 [TYR] 9:3049 [G] 4.66 9:3031 [C] 13.8
N:159 [TYR] 9:3050 [G] 2.63 9:3030 [C] 13.8
N:159 [TYR] 9:3051 [A] 3.25 9:3052 [A] 13.8
N:160 [SER] 9:3050 [G] 4.83 9:3030 [C] 48.0
N:160 [SER] 9:3051 [A] 3.17 9:3052 [A] 48.0
N:160 [SER] 9:3052 [A] 2.7 9:3051 [A] 48.0
N:161 [GLY] 9:3051 [A] 4.84 9:3052 [A] 36.3

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 1VQ8_N_9 N: 50s ribosomal protein l18p, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural) P14123 Ribonuclease H-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_9 4Y4O_1S_1B 0.63 0.87 2.3 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 1YHQ_N_9 1.00 1.0 0.19 1.0 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7RYG_N_B 0.63 0.86 1.72 0.18 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6AZ3_O_8 0.83 0.9 1.77 0.43 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7OF0_P_B 0.67 0.57 1.81 0.11 Ribonuclease H-like compare
1VQ8_N_9 7O9M_P_B 0.65 0.55 1.74 0.1 Ribonuclease H-like compare
1VQ8_N_9 7O7Y_BD_B7 0.84 0.91 1.74 0.38 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6S0Z_M_B 0.71 0.83 2.22 0.24 Ribonuclease H-like 5S ribosomal RNA compare