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All interfaces > All interologs > Interface groups > group123 > 1VQ8_N_9 vs 4Y4O_1S_1B

Interface analysis


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Common contacts -

1VQ8_N
1VQ8_9
4Y4O_1S
4Y4O_1B
Conserved?
N:77 [ASN] 9:3049 [G] 1S:62 [LYS] 1B:50 [G] ✔
N:77 [ASN] 9:3050 [G] 1S:62 [LYS] 1B:51 [G] ✔
N:48 [VAL] 9:3006 [C] 1S:40 [ILE] 1B:8 [U] ✔
N:115 [VAL] 9:3048 [C] 1S:98 [VAL] 1B:49 [C] ✔
N:60 [SER] 9:3119 [C] 1S:50 [SER] 1B:115 [G] ✔
N:60 [SER] 9:3120 [A] 1S:50 [SER] 1B:116 [G] ✔
N:42 [HIS] 9:3026 [C] 1S:34 [HIS] 1B:27 [C] ✔
N:42 [HIS] 9:3027 [C] 1S:34 [HIS] 1B:28 [C] ✔
N:23 [ARG] 9:3007 [G] 1S:15 [ARG] 1B:9 [G] ✔
N:108 [SER] 9:3046 [C] 1S:93 [LYS] 1B:47 [C] ✔
N:108 [SER] 9:3047 [A] 1S:93 [LYS] 1B:48 [A] ✔
N:55 [ASP] 9:3007 [G] 1S:45 [GLY] 1B:9 [G] ✔
N:55 [ASP] 9:3117 [G] 1S:45 [GLY] 1B:113 [G] ✔
N:55 [ASP] 9:3118 [C] 1S:45 [GLY] 1B:114 [C] ✔
N:39 [SER] 9:3027 [C] 1S:31 [SER] 1B:28 [C] ✔
N:39 [SER] 9:3028 [U] 1S:31 [SER] 1B:29 [A] ✔
N:33 [ARG] 9:3006 [C] 1S:25 [ARG] 1B:8 [U] ✔
N:33 [ARG] 9:3007 [G] 1S:25 [ARG] 1B:9 [G] ✔
N:78 [MET] 9:3048 [C] 1S:63 [THR] 1B:49 [C] ✔
N:78 [MET] 9:3049 [G] 1S:63 [THR] 1B:50 [G] ✔
N:37 [ARG] 9:3005 [G] 1S:29 [PHE] 1B:7 [G] ✔
N:40 [ASN] 9:3028 [U] 1S:32 [LEU] 1B:29 [A] ✔
N:40 [ASN] 9:3029 [C] 1S:32 [LEU] 1B:30 [C] ✔
N:40 [ASN] 9:3030 [C] 1S:32 [LEU] 1B:31 [C] ✔
N:40 [ASN] 9:3050 [G] 1S:32 [LEU] 1B:51 [G] ✔
N:40 [ASN] 9:3051 [A] 1S:32 [LEU] 1B:52 [A] ✔
N:110 [THR] 9:3036 [C] 1S:95 [HIS] 1B:37 [C] ✔
N:110 [THR] 9:3037 [C] 1S:95 [HIS] 1B:38 [C] ✔
N:110 [THR] 9:3047 [A] 1S:95 [HIS] 1B:48 [A] ✔
N:107 [ASN] 9:3047 [A] 1S:92 [TYR] 1B:48 [A] ✔
N:114 [LYS] 9:3047 [A] 1S:97 [ARG] 1B:48 [A] ✔
N:114 [LYS] 9:3048 [C] 1S:97 [ARG] 1B:49 [C] ✔
N:114 [LYS] 9:3049 [G] 1S:97 [ARG] 1B:50 [G] ✔
N:38 [LYS] 9:3028 [U] 1S:30 [ARG] 1B:29 [A] ✔
N:38 [LYS] 9:3047 [A] 1S:30 [ARG] 1B:48 [A] ✔
N:38 [LYS] 9:3048 [C] 1S:30 [ARG] 1B:49 [C] ✔
N:76 [GLY] 9:3049 [G] 1S:61 [ASN] 1B:50 [G] ✔
N:76 [GLY] 9:3050 [G] 1S:61 [ASN] 1B:51 [G] ✔
N:74 [PRO] 9:3050 [G] 1S:60 [GLY] 1B:51 [G] ✔
N:56 [ASP] 9:3117 [G] 1S:46 [VAL] 1B:113 [G] ✔
N:56 [ASP] 9:3118 [C] 1S:46 [VAL] 1B:114 [C] ✔
N:35 [VAL] 9:3005 [G] 1S:27 [SER] 1B:7 [G] ✔
N:35 [VAL] 9:3006 [C] 1S:27 [SER] 1B:8 [U] ✔
N:113 [SER] 9:3047 [A] 1S:96 [GLY] 1B:48 [A] ✔
N:113 [SER] 9:3048 [C] 1S:96 [GLY] 1B:49 [C] ✔
N:46 [GLN] 9:3005 [G] 1S:38 [GLN] 1B:7 [G] ✔
N:46 [GLN] 9:3006 [C] 1S:38 [GLN] 1B:8 [U] ✔
N:46 [GLN] 9:3119 [C] 1S:38 [GLN] 1B:115 [G] ✔
N:57 [THR] 9:3005 [G] 1S:47 [THR] 1B:7 [G] ✔
N:57 [THR] 9:3118 [C] 1S:47 [THR] 1B:114 [C] ✔
N:57 [THR] 9:3119 [C] 1S:47 [THR] 1B:115 [G] ✔
N:41 [LYS] 9:3026 [C] 1S:33 [LYS] 1B:27 [C] ✔
N:41 [LYS] 9:3027 [C] 1S:33 [LYS] 1B:28 [C] ✔
N:41 [LYS] 9:3028 [U] 1S:33 [LYS] 1B:29 [A] ✔
N:41 [LYS] 9:3051 [A] 1S:33 [LYS] 1B:52 [A] ✔
N:44 [ARG] 9:3004 [G] 1S:36 [TYR] 1B:6 [C] ✔
N:44 [ARG] 9:3120 [A] 1S:36 [TYR] 1B:116 [G] ✔
N:18 [THR] 9:3007 [G] 1S:10 [ARG] 1B:9 [G] ❌ 4Y4O_1S_1B
N:55 [ASP] 9:3006 [C] 1S:45 [GLY] 1B:8 [U] ❌ 4Y4O_1S_1B
N:37 [ARG] 9:3006 [C] 1S:29 [PHE] 1B:8 [U] ❌ 4Y4O_1S_1B
N:37 [ARG] 9:3007 [G] 1S:29 [PHE] 1B:9 [G] ❌ 4Y4O_1S_1B
N:110 [THR] 9:3046 [C] 1S:95 [HIS] 1B:47 [C] ❌ 4Y4O_1S_1B
N:62 [HIS] 9:3027 [C] 1S:52 [SER] 1B:28 [C] ❌ 4Y4O_1S_1B
N:74 [PRO] 9:3051 [A] 1S:60 [GLY] 1B:52 [A] ❌ 4Y4O_1S_1B
N:113 [SER] 9:3036 [C] 1S:96 [GLY] 1B:37 [C] ❌ 4Y4O_1S_1B
N:46 [GLN] 9:3004 [G] 1S:38 [GLN] 1B:6 [C] ❌ 4Y4O_1S_1B
N:41 [LYS] 9:3025 [G] 1S:33 [LYS] 1B:26 [A] ❌ 4Y4O_1S_1B
N:44 [ARG] 9:3005 [G] 1S:36 [TYR] 1B:7 [G] ❌ 4Y4O_1S_1B
N:18 [THR] 9:3046 [C] 1S:10 [ARG] 1B:47 [C] ❌ 1VQ8_N_9
N:23 [ARG] 9:3006 [C] 1S:15 [ARG] 1B:8 [U] ❌ 1VQ8_N_9
N:23 [ARG] 9:3005 [G] 1S:15 [ARG] 1B:7 [G] ❌ 1VQ8_N_9
N:37 [ARG] 9:3004 [G] 1S:29 [PHE] 1B:6 [C] ❌ 1VQ8_N_9
N:37 [ARG] 9:3027 [C] 1S:29 [PHE] 1B:28 [C] ❌ 1VQ8_N_9
N:37 [ARG] 9:3028 [U] 1S:29 [PHE] 1B:29 [A] ❌ 1VQ8_N_9
N:39 [SER] 9:3026 [C] 1S:31 [SER] 1B:27 [C] ❌ 1VQ8_N_9
N:40 [ASN] 9:3027 [C] 1S:32 [LEU] 1B:28 [C] ❌ 1VQ8_N_9
N:44 [ARG] 9:3027 [C] 1S:36 [TYR] 1B:28 [C] ❌ 1VQ8_N_9
N:44 [ARG] 9:3026 [C] 1S:36 [TYR] 1B:27 [C] ❌ 1VQ8_N_9
N:46 [GLN] 9:3118 [C] 1S:38 [GLN] 1B:114 [C] ❌ 1VQ8_N_9
N:62 [HIS] 9:3120 [A] 1S:52 [SER] 1B:116 [G] ❌ 1VQ8_N_9
N:77 [ASN] 9:3051 [A] 1S:62 [LYS] 1B:52 [A] ❌ 1VQ8_N_9
N:107 [ASN] 9:3046 [C] 1S:92 [TYR] 1B:47 [C] ❌ 1VQ8_N_9
N:108 [SER] 9:3037 [C] 1S:93 [LYS] 1B:38 [C] ❌ 1VQ8_N_9
N:110 [THR] 9:3048 [C] 1S:95 [HIS] 1B:49 [C] ❌ 1VQ8_N_9
N:20 [TYR] 9:3008 [G] 1S:12 [PHE] 1B:10 [C] ❌ 4Y4O_1S:12, 4Y4O_1B:10 no longer at interface
N:20 [TYR] 9:3010 [C] 1S:12 [PHE] 1B:12 [C] ❌ 4Y4O_1S:12, 4Y4O_1B:12 no longer at interface
N:14 [ARG] 9:3010 [C] 1S:5 [THR] 1B:12 [C] ❌ 4Y4O_1S:5, 4Y4O_1B:12 no longer at interface
N:14 [ARG] 9:3011 [A] 1S:5 [THR] 1B:13 [A] ❌ 4Y4O_1S:5, 4Y4O_1B:13 no longer at interface
N:14 [ARG] 9:3013 [A] 1S:5 [THR] 1B:15 [A] ❌ 4Y4O_1S:5, 4Y4O_1B:15 no longer at interface
N:14 [ARG] 9:3014 [G] 1S:5 [THR] 1B:16 [G] ❌ 4Y4O_1S:5, 4Y4O_1B:16 no longer at interface
N:23 [ARG] 9:3008 [G] 1S:15 [ARG] 1B:10 [C] ❌ 4Y4O_1B:10 no longer at interface
N:9 [PRO] 9:3010 [C] 1S:3 [ARG] 1B:12 [C] ❌ 4Y4O_1S:3, 4Y4O_1B:12 no longer at interface
N:52 [PRO] 9:3008 [G] 1S:44 [LYS] 1B:10 [C] ❌ 4Y4O_1S:44, 4Y4O_1B:10 no longer at interface
N:18 [THR] 9:3045 [A] 1S:10 [ARG] 1B:46 [A] ❌ 1VQ8_9:3045 no longer at interface
N:64 [SER] 9:3121 [C] 1S:54 [LEU] 1B:117 [G] ❌ 1VQ8_N:64, 1VQ8_9:3121 no longer at interface
N:65 [ASP] 9:3121 [C] 1S:55 [ALA] 1B:117 [G] ❌ 1VQ8_N:65, 1VQ8_9:3121 no longer at interface
N:108 [SER] 9:3038 [A] 1S:93 [LYS] 1B:39 [A] ❌ 1VQ8_9:3038 no longer at interface
N:20 [TYR] 9:3007 [G] 1S:12 [PHE] 1B:9 [G] ❌ 4Y4O_1S:12 no longer at interface
N:79 [PRO] 9:3049 [G] 1S:64 [GLU] 1B:50 [G] ❌ 4Y4O_1S:64 no longer at interface
N:17 [ARG] 9:3004 [G] 1S:9 [ARG] 1B:6 [C] ❌ 4Y4O_1S:9 no longer at interface
N:17 [ARG] 9:3005 [G] 1S:9 [ARG] 1B:7 [G] ❌ 4Y4O_1S:9 no longer at interface
N:17 [ARG] 9:3006 [C] 1S:9 [ARG] 1B:8 [U] ❌ 4Y4O_1S:9 no longer at interface
N:17 [ARG] 9:3007 [G] 1S:9 [ARG] 1B:9 [G] ❌ 4Y4O_1S:9 no longer at interface
N:103 [ASP] 9:3006 [C] 1S:88 [ASP] 1B:8 [U] ❌ 4Y4O_1S:88 no longer at interface
N:103 [ASP] 9:3007 [G] 1S:88 [ASP] 1B:9 [G] ❌ 4Y4O_1S:88 no longer at interface
N:19 [ASP] 9:3006 [C] 1S:11 [LYS] 1B:8 [U] ❌ 1VQ8_N:19 no longer at interface
N:19 [ASP] 9:3005 [G] 1S:11 [LYS] 1B:7 [G] ❌ 1VQ8_N:19 no longer at interface
N:27 [LEU] 9:3006 [C] 1S:19 [LYS] 1B:8 [U] ❌ 1VQ8_N:27 no longer at interface
N:27 [LEU] 9:3007 [G] 1S:19 [LYS] 1B:9 [G] ❌ 1VQ8_N:27 no longer at interface
N:50 [LEU] 9:3006 [C] 1S:42 [ASP] 1B:8 [U] ❌ 1VQ8_N:50 no longer at interface
N:50 [LEU] 9:3007 [G] 1S:42 [ASP] 1B:9 [G] ❌ 1VQ8_N:50 no longer at interface
N:64 [SER] 9:3026 [C] 1S:54 [LEU] 1B:27 [C] ❌ 1VQ8_N:64 no longer at interface
N:64 [SER] 9:3025 [G] 1S:54 [LEU] 1B:26 [A] ❌ 1VQ8_N:64 no longer at interface
N:65 [ASP] 9:3120 [A] 1S:55 [ALA] 1B:116 [G] ❌ 1VQ8_N:65 no longer at interface
N:15 [GLU] 9:3046 [C] 1S:7 [TYR] 1B:47 [C] ❌ 1VQ8_N:15 no longer at interface
N:106 [LEU] 9:3047 [A] 1S:91 [PRO] 1B:48 [A] ❌ 1VQ8_N:106 no longer at interface
N:106 [LEU] 9:3046 [C] 1S:91 [PRO] 1B:47 [C] ❌ 1VQ8_N:106 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 5S ribosomal RNA 0.87 2.3 0.26 0.84 0.8 0.8 0.88 0.63 0.50 0.29 0.55


Other pairs involving 1VQ8_N_9 or 4Y4O_1S_1B

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_9 4Y4O_1S_1B 0.65 0.87 2.31 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 4Y4O_1S_1B 0.63 0.87 2.3 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 1YHQ_N_9 1.00 1.0 0.19 1.0 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7RYG_N_B 0.63 0.86 1.72 0.18 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6AZ3_O_8 0.83 0.9 1.77 0.43 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7OF0_P_B 0.67 0.57 1.81 0.11 Ribonuclease H-like compare
1VQ8_N_9 7O9M_P_B 0.65 0.55 1.74 0.1 Ribonuclease H-like compare
1VQ8_N_9 7O7Y_BD_B7 0.84 0.91 1.74 0.38 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6S0Z_M_B 0.71 0.83 2.22 0.24 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6S0Z_M_B 0.82 0.89 1.29 0.51 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6AZ3_O_8 0.59 0.83 2.82 0.2 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O7Y_BD_B7 0.57 0.83 2.76 0.14 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O9M_P_B 0.72 0.53 2.72 0.1 Ribonuclease H-like compare
4Y4O_1S_1B 7OF0_P_B 0.72 0.54 2.33 0.11 Ribonuclease H-like compare
4Y4O_1S_1B 7RYG_N_B 0.86 0.91 1.56 0.43 Ribonuclease H-like 5S ribosomal RNA compare