Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
1VQ8_N
|
1VQ8_9
|
6S0Z_M
|
6S0Z_B
|
Conserved?
|
---|---|---|---|---|
N:77 [ASN] | 9:3049 [G] | M:69 [LYS] | B:48 [A] | ✔ |
N:77 [ASN] | 9:3050 [G] | M:69 [LYS] | B:49 [G] | ✔ |
N:48 [VAL] | 9:3006 [C] | M:45 [ILE] | B:6 [U] | ✔ |
N:60 [SER] | 9:3119 [C] | M:55 [GLN] | B:111 [C] | ✔ |
N:60 [SER] | 9:3120 [A] | M:55 [GLN] | B:112 [A] | ✔ |
N:42 [HIS] | 9:3026 [C] | M:39 [HIS] | B:25 [A] | ✔ |
N:42 [HIS] | 9:3027 [C] | M:39 [HIS] | B:26 [C] | ✔ |
N:23 [ARG] | 9:3007 [G] | M:19 [ARG] | B:7 [G] | ✔ |
N:23 [ARG] | 9:3008 [G] | M:19 [ARG] | B:8 [A] | ✔ |
N:108 [SER] | 9:3046 [C] | M:100 [LEU] | B:45 [C] | ✔ |
N:108 [SER] | 9:3047 [A] | M:100 [LEU] | B:46 [A] | ✔ |
N:55 [ASP] | 9:3007 [G] | M:50 [GLY] | B:7 [G] | ✔ |
N:55 [ASP] | 9:3117 [G] | M:50 [GLY] | B:109 [G] | ✔ |
N:55 [ASP] | 9:3118 [C] | M:50 [GLY] | B:110 [C] | ✔ |
N:39 [SER] | 9:3027 [C] | M:36 [SER] | B:26 [C] | ✔ |
N:39 [SER] | 9:3028 [U] | M:36 [SER] | B:27 [A] | ✔ |
N:33 [ARG] | 9:3006 [C] | M:30 [ARG] | B:6 [U] | ✔ |
N:33 [ARG] | 9:3007 [G] | M:30 [ARG] | B:7 [G] | ✔ |
N:78 [MET] | 9:3048 [C] | M:70 [VAL] | B:47 [C] | ✔ |
N:78 [MET] | 9:3049 [G] | M:70 [VAL] | B:48 [A] | ✔ |
N:37 [ARG] | 9:3005 [G] | M:34 [TYR] | B:5 [G] | ✔ |
N:37 [ARG] | 9:3006 [C] | M:34 [TYR] | B:6 [U] | ✔ |
N:40 [ASN] | 9:3028 [U] | M:37 [ASN] | B:27 [A] | ✔ |
N:40 [ASN] | 9:3029 [C] | M:37 [ASN] | B:28 [C] | ✔ |
N:40 [ASN] | 9:3030 [C] | M:37 [ASN] | B:29 [C] | ✔ |
N:40 [ASN] | 9:3050 [G] | M:37 [ASN] | B:49 [G] | ✔ |
N:40 [ASN] | 9:3051 [A] | M:37 [ASN] | B:50 [A] | ✔ |
N:110 [THR] | 9:3036 [C] | M:102 [HIS] | B:35 [C] | ✔ |
N:110 [THR] | 9:3037 [C] | M:102 [HIS] | B:36 [C] | ✔ |
N:110 [THR] | 9:3047 [A] | M:102 [HIS] | B:46 [A] | ✔ |
N:107 [ASN] | 9:3047 [A] | M:99 [TYR] | B:46 [A] | ✔ |
N:114 [LYS] | 9:3048 [C] | M:104 [ARG] | B:47 [C] | ✔ |
N:38 [LYS] | 9:3047 [A] | M:35 [ARG] | B:46 [A] | ✔ |
N:38 [LYS] | 9:3048 [C] | M:35 [ARG] | B:47 [C] | ✔ |
N:17 [ARG] | 9:3006 [C] | M:12 [LEU] | B:6 [U] | ✔ |
N:76 [GLY] | 9:3049 [G] | M:68 [THR] | B:48 [A] | ✔ |
N:76 [GLY] | 9:3050 [G] | M:68 [THR] | B:49 [G] | ✔ |
N:74 [PRO] | 9:3050 [G] | M:67 [ALA] | B:49 [G] | ✔ |
N:56 [ASP] | 9:3117 [G] | M:51 [VAL] | B:109 [G] | ✔ |
N:56 [ASP] | 9:3118 [C] | M:51 [VAL] | B:110 [C] | ✔ |
N:35 [VAL] | 9:3005 [G] | M:32 [ASN] | B:5 [G] | ✔ |
N:35 [VAL] | 9:3006 [C] | M:32 [ASN] | B:6 [U] | ✔ |
N:113 [SER] | 9:3047 [A] | M:103 [GLY] | B:46 [A] | ✔ |
N:113 [SER] | 9:3048 [C] | M:103 [GLY] | B:47 [C] | ✔ |
N:46 [GLN] | 9:3005 [G] | M:43 [GLN] | B:5 [G] | ✔ |
N:46 [GLN] | 9:3006 [C] | M:43 [GLN] | B:6 [U] | ✔ |
N:46 [GLN] | 9:3119 [C] | M:43 [GLN] | B:111 [C] | ✔ |
N:57 [THR] | 9:3005 [G] | M:52 [THR] | B:5 [G] | ✔ |
N:57 [THR] | 9:3118 [C] | M:52 [THR] | B:110 [C] | ✔ |
N:57 [THR] | 9:3119 [C] | M:52 [THR] | B:111 [C] | ✔ |
N:103 [ASP] | 9:3007 [G] | M:95 [ASP] | B:7 [G] | ✔ |
N:41 [LYS] | 9:3051 [A] | M:38 [LYS] | B:50 [A] | ✔ |
N:55 [ASP] | 9:3006 [C] | M:50 [GLY] | B:6 [U] | ❌ 6S0Z_M_B |
N:37 [ARG] | 9:3007 [G] | M:34 [TYR] | B:7 [G] | ❌ 6S0Z_M_B |
N:110 [THR] | 9:3046 [C] | M:102 [HIS] | B:45 [C] | ❌ 6S0Z_M_B |
N:114 [LYS] | 9:3047 [A] | M:104 [ARG] | B:46 [A] | ❌ 6S0Z_M_B |
N:114 [LYS] | 9:3049 [G] | M:104 [ARG] | B:48 [A] | ❌ 6S0Z_M_B |
N:38 [LYS] | 9:3028 [U] | M:35 [ARG] | B:27 [A] | ❌ 6S0Z_M_B |
N:17 [ARG] | 9:3004 [G] | M:12 [LEU] | B:4 [G] | ❌ 6S0Z_M_B |
N:17 [ARG] | 9:3005 [G] | M:12 [LEU] | B:5 [G] | ❌ 6S0Z_M_B |
N:17 [ARG] | 9:3007 [G] | M:12 [LEU] | B:7 [G] | ❌ 6S0Z_M_B |
N:74 [PRO] | 9:3051 [A] | M:67 [ALA] | B:50 [A] | ❌ 6S0Z_M_B |
N:113 [SER] | 9:3036 [C] | M:103 [GLY] | B:35 [C] | ❌ 6S0Z_M_B |
N:46 [GLN] | 9:3004 [G] | M:43 [GLN] | B:4 [G] | ❌ 6S0Z_M_B |
N:103 [ASP] | 9:3006 [C] | M:95 [ASP] | B:6 [U] | ❌ 6S0Z_M_B |
N:41 [LYS] | 9:3025 [G] | M:38 [LYS] | B:24 [C] | ❌ 6S0Z_M_B |
N:41 [LYS] | 9:3026 [C] | M:38 [LYS] | B:25 [A] | ❌ 6S0Z_M_B |
N:41 [LYS] | 9:3027 [C] | M:38 [LYS] | B:26 [C] | ❌ 6S0Z_M_B |
N:41 [LYS] | 9:3028 [U] | M:38 [LYS] | B:27 [A] | ❌ 6S0Z_M_B |
N:44 [ARG] | 9:3004 [G] | M:41 [TYR] | B:4 [G] | ❌ 6S0Z_M_B |
N:44 [ARG] | 9:3005 [G] | M:41 [TYR] | B:5 [G] | ❌ 6S0Z_M_B |
N:44 [ARG] | 9:3120 [A] | M:41 [TYR] | B:112 [A] | ❌ 6S0Z_M_B |
N:110 [THR] | 9:3048 [C] | M:102 [HIS] | B:47 [C] | ❌ 1VQ8_N_9 |
N:37 [ARG] | 9:3027 [C] | M:34 [TYR] | B:26 [C] | ❌ 1VQ8_N_9 |
N:37 [ARG] | 9:3028 [U] | M:34 [TYR] | B:27 [A] | ❌ 1VQ8_N_9 |
N:37 [ARG] | 9:3004 [G] | M:34 [TYR] | B:4 [G] | ❌ 1VQ8_N_9 |
N:38 [LYS] | 9:3046 [C] | M:35 [ARG] | B:45 [C] | ❌ 1VQ8_N_9 |
N:39 [SER] | 9:3026 [C] | M:36 [SER] | B:25 [A] | ❌ 1VQ8_N_9 |
N:40 [ASN] | 9:3027 [C] | M:37 [ASN] | B:26 [C] | ❌ 1VQ8_N_9 |
N:44 [ARG] | 9:3027 [C] | M:41 [TYR] | B:26 [C] | ❌ 1VQ8_N_9 |
N:44 [ARG] | 9:3026 [C] | M:41 [TYR] | B:25 [A] | ❌ 1VQ8_N_9 |
N:46 [GLN] | 9:3118 [C] | M:43 [GLN] | B:110 [C] | ❌ 1VQ8_N_9 |
N:77 [ASN] | 9:3051 [A] | M:69 [LYS] | B:50 [A] | ❌ 1VQ8_N_9 |
N:20 [TYR] | 9:3010 [C] | M:16 [ALA] | B:10 [U] | ❌ 6S0Z_M:16, 6S0Z_B:10 no longer at interface |
N:64 [SER] | 9:3121 [C] | M:59 [LYS] | B:113 [G] | ❌ 1VQ8_N:64, 1VQ8_9:3121 no longer at interface |
N:15 [GLU] | 9:3059 [C] | M:9 [LYS] | B:58 [C] | ❌ 1VQ8_N:15, 1VQ8_9:3059 no longer at interface |
N:15 [GLU] | 9:3058 [G] | M:9 [LYS] | B:57 [G] | ❌ 1VQ8_N:15, 1VQ8_9:3058 no longer at interface |
N:20 [TYR] | 9:3007 [G] | M:16 [ALA] | B:7 [G] | ❌ 6S0Z_M:16 no longer at interface |
N:20 [TYR] | 9:3008 [G] | M:16 [ALA] | B:8 [A] | ❌ 6S0Z_M:16 no longer at interface |
N:79 [PRO] | 9:3049 [G] | M:71 [GLU] | B:48 [A] | ❌ 6S0Z_M:71 no longer at interface |
N:115 [VAL] | 9:3048 [C] | M:105 [VAL] | B:47 [C] | ❌ 6S0Z_M:105 no longer at interface |
N:18 [THR] | 9:3007 [G] | M:13 [LYS] | B:7 [G] | ❌ 6S0Z_M:13 no longer at interface |
N:62 [HIS] | 9:3027 [C] | M:57 [SER] | B:26 [C] | ❌ 6S0Z_M:57 no longer at interface |
N:52 [PRO] | 9:3008 [G] | M:49 [LYS] | B:8 [A] | ❌ 6S0Z_M:49 no longer at interface |
N:50 [LEU] | 9:3006 [C] | M:47 [ASP] | B:6 [U] | ❌ 1VQ8_N:50 no longer at interface |
N:50 [LEU] | 9:3007 [G] | M:47 [ASP] | B:7 [G] | ❌ 1VQ8_N:50 no longer at interface |
N:64 [SER] | 9:3025 [G] | M:59 [LYS] | B:24 [C] | ❌ 1VQ8_N:64 no longer at interface |
N:64 [SER] | 9:3026 [C] | M:59 [LYS] | B:25 [A] | ❌ 1VQ8_N:64 no longer at interface |
N:73 [ALA] | 9:3050 [G] | M:66 [THR] | B:49 [G] | ❌ 1VQ8_N:73 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribonuclease H-like | 5S ribosomal RNA | 0.83 | 2.22 | 0.24 | 0.76 | 0.78 | 0.73 | 0.85 | 0.71 | 0.61 | 0.30 | 0.34 |
Other pairs involving 1VQ8_N_9 or 6S0Z_M_B
Total number of entries: 15