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All interfaces > All interologs > Interface groups > group123 > 1VQ8_N_9 vs 7O7Y_BD_B7

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Common contacts -

1VQ8_N
1VQ8_9
7O7Y_BD
7O7Y_B7
Conserved?
N:4 [PRO] 9:3011 [A] BD:14 [LYS] B7:11 [A] ✔
N:4 [PRO] 9:3068 [G] BD:14 [LYS] B7:66 [G] ✔
N:4 [PRO] 9:3069 [U] BD:14 [LYS] B7:67 [C] ✔
N:20 [TYR] 9:3007 [G] BD:30 [TYR] B7:7 [G] ✔
N:20 [TYR] 9:3008 [G] BD:30 [TYR] B7:8 [G] ✔
N:20 [TYR] 9:3010 [C] BD:30 [TYR] B7:10 [C] ✔
N:77 [ASN] 9:3049 [G] BD:94 [ASN] B7:47 [G] ✔
N:77 [ASN] 9:3050 [G] BD:94 [ASN] B7:48 [G] ✔
N:150 [TYR] 9:3032 [G] BD:207 [TYR] B7:31 [G] ✔
N:150 [TYR] 9:3034 [A] BD:207 [TYR] B7:33 [U] ✔
N:150 [TYR] 9:3049 [G] BD:207 [TYR] B7:47 [G] ✔
N:48 [VAL] 9:3006 [C] BD:65 [ALA] B7:6 [C] ✔
N:158 [LEU] 9:3049 [G] BD:222 [GLN] B7:47 [G] ✔
N:158 [LEU] 9:3050 [G] BD:222 [GLN] B7:48 [G] ✔
N:158 [LEU] 9:3051 [A] BD:222 [GLN] B7:49 [A] ✔
N:115 [VAL] 9:3048 [C] BD:159 [VAL] B7:46 [C] ✔
N:147 [ILE] 9:3049 [G] BD:204 [VAL] B7:47 [G] ✔
N:147 [ILE] 9:3050 [G] BD:204 [VAL] B7:48 [G] ✔
N:141 [ARG] 9:3035 [C] BD:198 [HIS] B7:34 [C] ✔
N:141 [ARG] 9:3036 [C] BD:198 [HIS] B7:35 [U] ✔
N:60 [SER] 9:3119 [C] BD:77 [ALA] B7:115 [A] ✔
N:160 [SER] 9:3050 [G] BD:224 [SER] B7:48 [G] ✔
N:160 [SER] 9:3051 [A] BD:224 [SER] B7:49 [A] ✔
N:160 [SER] 9:3052 [A] BD:224 [SER] B7:50 [A] ✔
N:54 [GLY] 9:3007 [G] BD:71 [GLY] B7:7 [G] ✔
N:54 [GLY] 9:3008 [G] BD:71 [GLY] B7:8 [G] ✔
N:54 [GLY] 9:3117 [G] BD:71 [GLY] B7:113 [G] ✔
N:42 [HIS] 9:3027 [C] BD:59 [ASP] B7:26 [C] ✔
N:10 [MET] 9:3010 [C] BD:20 [PHE] B7:10 [C] ✔
N:18 [THR] 9:3007 [G] BD:28 [THR] B7:7 [G] ✔
N:8 [VAL] 9:3010 [C] BD:18 [VAL] B7:10 [C] ✔
N:8 [VAL] 9:3011 [A] BD:18 [VAL] B7:11 [A] ✔
N:8 [VAL] 9:3014 [G] BD:18 [VAL] B7:14 [C] ✔
N:14 [ARG] 9:3013 [A] BD:24 [ARG] B7:13 [A] ✔
N:14 [ARG] 9:3014 [G] BD:24 [ARG] B7:14 [C] ✔
N:53 [ASN] 9:3007 [G] BD:70 [GLU] B7:7 [G] ✔
N:53 [ASN] 9:3008 [G] BD:70 [GLU] B7:8 [G] ✔
N:53 [ASN] 9:3117 [G] BD:70 [GLU] B7:113 [G] ✔
N:23 [ARG] 9:3007 [G] BD:33 [ARG] B7:7 [G] ✔
N:23 [ARG] 9:3008 [G] BD:33 [ARG] B7:8 [G] ✔
N:159 [TYR] 9:3049 [G] BD:223 [PHE] B7:47 [G] ✔
N:159 [TYR] 9:3050 [G] BD:223 [PHE] B7:48 [G] ✔
N:159 [TYR] 9:3051 [A] BD:223 [PHE] B7:49 [A] ✔
N:153 [GLN] 9:3034 [A] BD:210 [TYR] B7:33 [U] ✔
N:108 [SER] 9:3046 [C] BD:152 [ARG] B7:44 [C] ✔
N:108 [SER] 9:3047 [A] BD:152 [ARG] B7:45 [U] ✔
N:55 [ASP] 9:3006 [C] BD:72 [ASP] B7:6 [C] ✔
N:55 [ASP] 9:3007 [G] BD:72 [ASP] B7:7 [G] ✔
N:55 [ASP] 9:3117 [G] BD:72 [ASP] B7:113 [G] ✔
N:55 [ASP] 9:3118 [C] BD:72 [ASP] B7:114 [U] ✔
N:39 [SER] 9:3027 [C] BD:56 [THR] B7:26 [C] ✔
N:39 [SER] 9:3028 [U] BD:56 [THR] B7:27 [G] ✔
N:33 [ARG] 9:3006 [C] BD:50 [ARG] B7:6 [C] ✔
N:33 [ARG] 9:3007 [G] BD:50 [ARG] B7:7 [G] ✔
N:6 [TYR] 9:3011 [A] BD:16 [TYR] B7:11 [A] ✔
N:6 [TYR] 9:3014 [G] BD:16 [TYR] B7:14 [C] ✔
N:78 [MET] 9:3048 [C] BD:95 [TYR] B7:46 [C] ✔
N:78 [MET] 9:3049 [G] BD:95 [TYR] B7:47 [G] ✔
N:11 [ARG] 9:3007 [G] BD:21 [ARG] B7:7 [G] ✔
N:11 [ARG] 9:3008 [G] BD:21 [ARG] B7:8 [G] ✔
N:11 [ARG] 9:3009 [C] BD:21 [ARG] B7:9 [C] ✔
N:11 [ARG] 9:3010 [C] BD:21 [ARG] B7:10 [C] ✔
N:11 [ARG] 9:3013 [A] BD:21 [ARG] B7:13 [A] ✔
N:11 [ARG] 9:3114 [G] BD:21 [ARG] B7:110 [G] ✔
N:11 [ARG] 9:3115 [C] BD:21 [ARG] B7:111 [C] ✔
N:1 [ALA] 9:3015 [C] BD:8 [LYS] B7:15 [C] ✔
N:37 [ARG] 9:3005 [G] BD:54 [ARG] B7:5 [A] ✔
N:37 [ARG] 9:3006 [C] BD:54 [ARG] B7:6 [C] ✔
N:37 [ARG] 9:3007 [G] BD:54 [ARG] B7:7 [G] ✔
N:40 [ASN] 9:3028 [U] BD:57 [ASN] B7:27 [G] ✔
N:40 [ASN] 9:3029 [C] BD:57 [ASN] B7:28 [C] ✔
N:40 [ASN] 9:3030 [C] BD:57 [ASN] B7:29 [C] ✔
N:40 [ASN] 9:3050 [G] BD:57 [ASN] B7:48 [G] ✔
N:40 [ASN] 9:3051 [A] BD:57 [ASN] B7:49 [A] ✔
N:110 [THR] 9:3037 [C] BD:154 [THR] B7:36 [C] ✔
N:110 [THR] 9:3046 [C] BD:154 [THR] B7:44 [C] ✔
N:110 [THR] 9:3047 [A] BD:154 [THR] B7:45 [U] ✔
N:107 [ASN] 9:3047 [A] BD:151 [ALA] B7:45 [U] ✔
N:114 [LYS] 9:3047 [A] BD:158 [LYS] B7:45 [U] ✔
N:114 [LYS] 9:3048 [C] BD:158 [LYS] B7:46 [C] ✔
N:114 [LYS] 9:3049 [G] BD:158 [LYS] B7:47 [G] ✔
N:111 [PRO] 9:3036 [C] BD:155 [THR] B7:35 [U] ✔
N:111 [PRO] 9:3037 [C] BD:155 [THR] B7:36 [C] ✔
N:38 [LYS] 9:3028 [U] BD:55 [VAL] B7:27 [G] ✔
N:17 [ARG] 9:3004 [G] BD:27 [LYS] B7:4 [U] ✔
N:17 [ARG] 9:3005 [G] BD:27 [LYS] B7:5 [A] ✔
N:17 [ARG] 9:3006 [C] BD:27 [LYS] B7:6 [C] ✔
N:17 [ARG] 9:3007 [G] BD:27 [LYS] B7:7 [G] ✔
N:9 [PRO] 9:3010 [C] BD:19 [LYS] B7:10 [C] ✔
N:146 [HIS] 9:3034 [A] BD:203 [ASN] B7:33 [U] ✔
N:146 [HIS] 9:3035 [C] BD:203 [ASN] B7:34 [C] ✔
N:146 [HIS] 9:3048 [C] BD:203 [ASN] B7:46 [C] ✔
N:146 [HIS] 9:3049 [G] BD:203 [ASN] B7:47 [G] ✔
N:76 [GLY] 9:3049 [G] BD:93 [THR] B7:47 [G] ✔
N:76 [GLY] 9:3050 [G] BD:93 [THR] B7:48 [G] ✔
N:74 [PRO] 9:3050 [G] BD:91 [GLY] B7:48 [G] ✔
N:74 [PRO] 9:3051 [A] BD:91 [GLY] B7:49 [A] ✔
N:56 [ASP] 9:3117 [G] BD:73 [MET] B7:113 [G] ✔
N:56 [ASP] 9:3118 [C] BD:73 [MET] B7:114 [U] ✔
N:35 [VAL] 9:3005 [G] BD:52 [ILE] B7:5 [A] ✔
N:35 [VAL] 9:3006 [C] BD:52 [ILE] B7:6 [C] ✔
N:52 [PRO] 9:3008 [G] BD:69 [ILE] B7:8 [G] ✔
N:113 [SER] 9:3047 [A] BD:157 [ASN] B7:45 [U] ✔
N:113 [SER] 9:3048 [C] BD:157 [ASN] B7:46 [C] ✔
N:46 [GLN] 9:3005 [G] BD:63 [GLN] B7:5 [A] ✔
N:46 [GLN] 9:3006 [C] BD:63 [GLN] B7:6 [C] ✔
N:46 [GLN] 9:3119 [C] BD:63 [GLN] B7:115 [A] ✔
N:12 [ARG] 9:3006 [C] BD:22 [ARG] B7:6 [C] ✔
N:12 [ARG] 9:3007 [G] BD:22 [ARG] B7:7 [G] ✔
N:57 [THR] 9:3005 [G] BD:74 [ILE] B7:5 [A] ✔
N:57 [THR] 9:3118 [C] BD:74 [ILE] B7:114 [U] ✔
N:57 [THR] 9:3119 [C] BD:74 [ILE] B7:115 [A] ✔
N:103 [ASP] 9:3006 [C] BD:147 [ASP] B7:6 [C] ✔
N:103 [ASP] 9:3007 [G] BD:147 [ASP] B7:7 [G] ✔
N:41 [LYS] 9:3027 [C] BD:58 [ARG] B7:26 [C] ✔
N:41 [LYS] 9:3028 [U] BD:58 [ARG] B7:27 [G] ✔
N:41 [LYS] 9:3051 [A] BD:58 [ARG] B7:49 [A] ✔
N:44 [ARG] 9:3004 [G] BD:61 [ILE] B7:4 [U] ✔
N:44 [ARG] 9:3005 [G] BD:61 [ILE] B7:5 [A] ✔
N:3 [GLY] 9:3011 [A] BD:13 [PHE] B7:11 [A] ✔
N:3 [GLY] 9:3068 [G] BD:13 [PHE] B7:66 [G] ✔
N:3 [GLY] 9:3069 [U] BD:13 [PHE] B7:67 [C] ✔
N:161 [GLY] 9:3051 [A] BD:225 [GLN] B7:49 [A] ✔
N:112 [GLY] 9:3036 [C] BD:156 [GLY] B7:35 [U] ✔
N:147 [ILE] 9:3034 [A] BD:204 [VAL] B7:33 [U] ❌ 7O7Y_BD_B7
N:141 [ARG] 9:3048 [C] BD:198 [HIS] B7:46 [C] ❌ 7O7Y_BD_B7
N:141 [ARG] 9:3049 [G] BD:198 [HIS] B7:47 [G] ❌ 7O7Y_BD_B7
N:60 [SER] 9:3120 [A] BD:77 [ALA] B7:116 [G] ❌ 7O7Y_BD_B7
N:8 [VAL] 9:3013 [A] BD:18 [VAL] B7:13 [A] ❌ 7O7Y_BD_B7
N:14 [ARG] 9:3010 [C] BD:24 [ARG] B7:10 [C] ❌ 7O7Y_BD_B7
N:14 [ARG] 9:3011 [A] BD:24 [ARG] B7:11 [A] ❌ 7O7Y_BD_B7
N:1 [ALA] 9:3011 [A] BD:8 [LYS] B7:11 [A] ❌ 7O7Y_BD_B7
N:1 [ALA] 9:3014 [G] BD:8 [LYS] B7:14 [C] ❌ 7O7Y_BD_B7
N:1 [ALA] 9:3067 [C] BD:8 [LYS] B7:65 [G] ❌ 7O7Y_BD_B7
N:1 [ALA] 9:3068 [G] BD:8 [LYS] B7:66 [G] ❌ 7O7Y_BD_B7
N:110 [THR] 9:3036 [C] BD:154 [THR] B7:35 [U] ❌ 7O7Y_BD_B7
N:38 [LYS] 9:3047 [A] BD:55 [VAL] B7:45 [U] ❌ 7O7Y_BD_B7
N:38 [LYS] 9:3048 [C] BD:55 [VAL] B7:46 [C] ❌ 7O7Y_BD_B7
N:62 [HIS] 9:3027 [C] BD:79 [TYR] B7:26 [C] ❌ 7O7Y_BD_B7
N:113 [SER] 9:3036 [C] BD:157 [ASN] B7:35 [U] ❌ 7O7Y_BD_B7
N:46 [GLN] 9:3004 [G] BD:63 [GLN] B7:4 [U] ❌ 7O7Y_BD_B7
N:44 [ARG] 9:3120 [A] BD:61 [ILE] B7:116 [G] ❌ 7O7Y_BD_B7
N:3 [GLY] 9:3067 [C] BD:13 [PHE] B7:65 [G] ❌ 1VQ8_N_9
N:3 [GLY] 9:3014 [G] BD:13 [PHE] B7:14 [C] ❌ 1VQ8_N_9
N:3 [GLY] 9:3015 [C] BD:13 [PHE] B7:15 [C] ❌ 1VQ8_N_9
N:111 [PRO] 9:3047 [A] BD:155 [THR] B7:45 [U] ❌ 1VQ8_N_9
N:112 [GLY] 9:3048 [C] BD:156 [GLY] B7:46 [C] ❌ 1VQ8_N_9
N:112 [GLY] 9:3047 [A] BD:156 [GLY] B7:45 [U] ❌ 1VQ8_N_9
N:12 [ARG] 9:3008 [G] BD:22 [ARG] B7:8 [G] ❌ 1VQ8_N_9
N:158 [LEU] 9:3032 [G] BD:222 [GLN] B7:31 [G] ❌ 1VQ8_N_9
N:161 [GLY] 9:3052 [A] BD:225 [GLN] B7:50 [A] ❌ 1VQ8_N_9
N:23 [ARG] 9:3006 [C] BD:33 [ARG] B7:6 [C] ❌ 1VQ8_N_9
N:39 [SER] 9:3005 [G] BD:56 [THR] B7:5 [A] ❌ 1VQ8_N_9
N:41 [LYS] 9:3029 [C] BD:58 [ARG] B7:28 [C] ❌ 1VQ8_N_9
N:57 [THR] 9:3006 [C] BD:74 [ILE] B7:6 [C] ❌ 1VQ8_N_9
N:62 [HIS] 9:3119 [C] BD:79 [TYR] B7:115 [A] ❌ 1VQ8_N_9
N:62 [HIS] 9:3120 [A] BD:79 [TYR] B7:116 [G] ❌ 1VQ8_N_9
N:62 [HIS] 9:3004 [G] BD:79 [TYR] B7:4 [U] ❌ 1VQ8_N_9
N:42 [HIS] 9:3026 [C] BD:59 [ASP] B7:25 [G] ❌ 7O7Y_B7:25 no longer at interface
N:53 [ASN] 9:3116 [C] BD:70 [GLU] B7:112 [U] ❌ 7O7Y_B7:112 no longer at interface
N:11 [ARG] 9:3116 [C] BD:21 [ARG] B7:112 [U] ❌ 7O7Y_B7:112 no longer at interface
N:41 [LYS] 9:3025 [G] BD:58 [ARG] B7:24 [C] ❌ 7O7Y_B7:24 no longer at interface
N:41 [LYS] 9:3026 [C] BD:58 [ARG] B7:25 [G] ❌ 7O7Y_B7:25 no longer at interface
N:110 [THR] 9:3038 [A] BD:154 [THR] B7:37 [G] ❌ 1VQ8_9:3038 no longer at interface
N:150 [TYR] 9:3033 [U] BD:207 [TYR] B7:32 [A] ❌ 1VQ8_9:3033 no longer at interface
N:158 [LEU] 9:3031 [C] BD:222 [GLN] B7:30 [C] ❌ 1VQ8_9:3031 no longer at interface
N:15 [GLU] 9:3060 [C] BD:25 [GLU] B7:58 [A] ❌ 1VQ8_N:15, 1VQ8_9:3060 no longer at interface
N:186 [LEU] 9:3121 [C] BD:253 [TYR] B7:117 [G] ❌ 1VQ8_N:186, 1VQ8_9:3121 no longer at interface
N:41 [LYS] 9:3053 [G] BD:58 [ARG] B7:51 [G] ❌ 1VQ8_9:3053 no longer at interface
N:41 [LYS] 9:3054 [A] BD:58 [ARG] B7:52 [C] ❌ 1VQ8_9:3054 no longer at interface
N:1 [ALA] 9:3016 [G] BD:8 [LYS] B7:16 [A] ❌ 1VQ8_9:3016 no longer at interface
N:2 [THR] 9:3068 [G] BD:12 [TYR] B7:66 [G] ❌ 7O7Y_BD:12 no longer at interface
N:79 [PRO] 9:3049 [G] BD:96 [ALA] B7:47 [G] ❌ 7O7Y_BD:96 no longer at interface
N:5 [ARG] 9:3011 [A] BD:15 [ARG] B7:11 [A] ❌ 7O7Y_BD:15 no longer at interface
N:106 [LEU] 9:3047 [A] BD:150 [LEU] B7:45 [U] ❌ 1VQ8_N:106 no longer at interface
N:7 [LYS] 9:3011 [A] BD:17 [GLN] B7:11 [A] ❌ 1VQ8_N:7 no longer at interface
N:137 [ALA] 9:3036 [C] BD:181 [PRO] B7:35 [U] ❌ 1VQ8_N:137 no longer at interface
N:186 [LEU] 9:3120 [A] BD:253 [TYR] B7:116 [G] ❌ 1VQ8_N:186 no longer at interface
N:51 [GLY] 9:3008 [G] BD:68 [ARG] B7:8 [G] ❌ 1VQ8_N:51 no longer at interface
N:51 [GLY] 9:3007 [G] BD:68 [ARG] B7:7 [G] ❌ 1VQ8_N:51 no longer at interface
N:64 [SER] 9:3120 [A] BD:81 [HIS] B7:116 [G] ❌ 1VQ8_N:64 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 5S ribosomal RNA 0.91 1.74 0.38 0.91 0.83 0.95 0.92 0.84 0.71 0.43 0.40


Other pairs involving 1VQ8_N_9 or 7O7Y_BD_B7

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_9 4Y4O_1S_1B 0.63 0.87 2.3 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 1YHQ_N_9 1.00 1.0 0.19 1.0 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7RYG_N_B 0.63 0.86 1.72 0.18 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6AZ3_O_8 0.83 0.9 1.77 0.43 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 7OF0_P_B 0.67 0.57 1.81 0.11 Ribonuclease H-like compare
1VQ8_N_9 7O9M_P_B 0.65 0.55 1.74 0.1 Ribonuclease H-like compare
1VQ8_N_9 7O7Y_BD_B7 0.84 0.91 1.74 0.38 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6S0Z_M_B 0.71 0.83 2.22 0.24 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7O7Y_BD_B7 0.86 0.91 1.71 0.37 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O7Y_BD_B7 0.57 0.83 2.76 0.14 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 7O7Y_BD_B7 0.92 0.96 0.98 0.67 Ribonuclease H-like 5S ribosomal RNA compare
6S0Z_M_B 7O7Y_BD_B7 0.57 0.83 2.02 0.16 Ribonuclease H-like 5S ribosomal RNA compare
7O7Y_BD_B7 7OF0_P_B 0.69 0.56 1.89 0.11 Ribonuclease H-like compare
7O7Y_BD_B7 7RYG_N_B 0.60 0.84 2.24 0.18 Ribonuclease H-like 5S ribosomal RNA compare
7O7Y_BD_B7 7O9M_P_B 0.71 0.55 1.95 0.1 Ribonuclease H-like compare