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All interfaces > All interologs > Interface groups > group123 > 1YHQ_N_9 vs 6S0Z_M_B

Interface analysis


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Common contacts -

1YHQ_N
1YHQ_9
6S0Z_M
6S0Z_B
Conserved?
N:77 [ASN] 9:49 [G] M:69 [LYS] B:48 [A] ✔
N:77 [ASN] 9:50 [G] M:69 [LYS] B:49 [G] ✔
N:48 [VAL] 9:6 [C] M:45 [ILE] B:6 [U] ✔
N:60 [SER] 9:119 [C] M:55 [GLN] B:111 [C] ✔
N:60 [SER] 9:120 [A] M:55 [GLN] B:112 [A] ✔
N:42 [HIS] 9:26 [C] M:39 [HIS] B:25 [A] ✔
N:42 [HIS] 9:27 [C] M:39 [HIS] B:26 [C] ✔
N:23 [ARG] 9:7 [G] M:19 [ARG] B:7 [G] ✔
N:23 [ARG] 9:8 [G] M:19 [ARG] B:8 [A] ✔
N:108 [SER] 9:46 [C] M:100 [LEU] B:45 [C] ✔
N:108 [SER] 9:47 [A] M:100 [LEU] B:46 [A] ✔
N:55 [ASP] 9:7 [G] M:50 [GLY] B:7 [G] ✔
N:55 [ASP] 9:117 [G] M:50 [GLY] B:109 [G] ✔
N:55 [ASP] 9:118 [C] M:50 [GLY] B:110 [C] ✔
N:39 [SER] 9:26 [C] M:36 [SER] B:25 [A] ✔
N:39 [SER] 9:27 [C] M:36 [SER] B:26 [C] ✔
N:39 [SER] 9:28 [U] M:36 [SER] B:27 [A] ✔
N:33 [ARG] 9:6 [C] M:30 [ARG] B:6 [U] ✔
N:33 [ARG] 9:7 [G] M:30 [ARG] B:7 [G] ✔
N:78 [MET] 9:48 [C] M:70 [VAL] B:47 [C] ✔
N:78 [MET] 9:49 [G] M:70 [VAL] B:48 [A] ✔
N:37 [ARG] 9:5 [G] M:34 [TYR] B:5 [G] ✔
N:37 [ARG] 9:6 [C] M:34 [TYR] B:6 [U] ✔
N:40 [ASN] 9:27 [C] M:37 [ASN] B:26 [C] ✔
N:40 [ASN] 9:28 [U] M:37 [ASN] B:27 [A] ✔
N:40 [ASN] 9:29 [C] M:37 [ASN] B:28 [C] ✔
N:40 [ASN] 9:30 [C] M:37 [ASN] B:29 [C] ✔
N:40 [ASN] 9:50 [G] M:37 [ASN] B:49 [G] ✔
N:40 [ASN] 9:51 [A] M:37 [ASN] B:50 [A] ✔
N:110 [THR] 9:36 [C] M:102 [HIS] B:35 [C] ✔
N:110 [THR] 9:37 [C] M:102 [HIS] B:36 [C] ✔
N:110 [THR] 9:47 [A] M:102 [HIS] B:46 [A] ✔
N:107 [ASN] 9:47 [A] M:99 [TYR] B:46 [A] ✔
N:114 [LYS] 9:48 [C] M:104 [ARG] B:47 [C] ✔
N:38 [LYS] 9:47 [A] M:35 [ARG] B:46 [A] ✔
N:38 [LYS] 9:48 [C] M:35 [ARG] B:47 [C] ✔
N:17 [ARG] 9:6 [C] M:12 [LEU] B:6 [U] ✔
N:76 [GLY] 9:49 [G] M:68 [THR] B:48 [A] ✔
N:76 [GLY] 9:50 [G] M:68 [THR] B:49 [G] ✔
N:74 [PRO] 9:50 [G] M:66 [THR] B:49 [G] ✔
N:56 [ASP] 9:117 [G] M:51 [VAL] B:109 [G] ✔
N:56 [ASP] 9:118 [C] M:51 [VAL] B:110 [C] ✔
N:35 [VAL] 9:5 [G] M:32 [ASN] B:5 [G] ✔
N:35 [VAL] 9:6 [C] M:32 [ASN] B:6 [U] ✔
N:113 [SER] 9:47 [A] M:103 [GLY] B:46 [A] ✔
N:113 [SER] 9:48 [C] M:103 [GLY] B:47 [C] ✔
N:46 [GLN] 9:5 [G] M:43 [GLN] B:5 [G] ✔
N:46 [GLN] 9:6 [C] M:43 [GLN] B:6 [U] ✔
N:46 [GLN] 9:119 [C] M:43 [GLN] B:111 [C] ✔
N:57 [THR] 9:5 [G] M:52 [THR] B:5 [G] ✔
N:57 [THR] 9:118 [C] M:52 [THR] B:110 [C] ✔
N:57 [THR] 9:119 [C] M:52 [THR] B:111 [C] ✔
N:103 [ASP] 9:7 [G] M:95 [ASP] B:7 [G] ✔
N:41 [LYS] 9:51 [A] M:38 [LYS] B:50 [A] ✔
N:23 [ARG] 9:6 [C] M:19 [ARG] B:6 [U] ❌ 6S0Z_M_B
N:55 [ASP] 9:6 [C] M:50 [GLY] B:6 [U] ❌ 6S0Z_M_B
N:37 [ARG] 9:7 [G] M:34 [TYR] B:7 [G] ❌ 6S0Z_M_B
N:110 [THR] 9:46 [C] M:102 [HIS] B:45 [C] ❌ 6S0Z_M_B
N:114 [LYS] 9:47 [A] M:104 [ARG] B:46 [A] ❌ 6S0Z_M_B
N:114 [LYS] 9:49 [G] M:104 [ARG] B:48 [A] ❌ 6S0Z_M_B
N:38 [LYS] 9:28 [U] M:35 [ARG] B:27 [A] ❌ 6S0Z_M_B
N:17 [ARG] 9:4 [G] M:12 [LEU] B:4 [G] ❌ 6S0Z_M_B
N:17 [ARG] 9:5 [G] M:12 [LEU] B:5 [G] ❌ 6S0Z_M_B
N:17 [ARG] 9:7 [G] M:12 [LEU] B:7 [G] ❌ 6S0Z_M_B
N:74 [PRO] 9:51 [A] M:66 [THR] B:50 [A] ❌ 6S0Z_M_B
N:113 [SER] 9:36 [C] M:103 [GLY] B:35 [C] ❌ 6S0Z_M_B
N:46 [GLN] 9:4 [G] M:43 [GLN] B:4 [G] ❌ 6S0Z_M_B
N:103 [ASP] 9:6 [C] M:95 [ASP] B:6 [U] ❌ 6S0Z_M_B
N:41 [LYS] 9:25 [G] M:38 [LYS] B:24 [C] ❌ 6S0Z_M_B
N:41 [LYS] 9:26 [C] M:38 [LYS] B:25 [A] ❌ 6S0Z_M_B
N:41 [LYS] 9:27 [C] M:38 [LYS] B:26 [C] ❌ 6S0Z_M_B
N:41 [LYS] 9:28 [U] M:38 [LYS] B:27 [A] ❌ 6S0Z_M_B
N:44 [ARG] 9:4 [G] M:41 [TYR] B:4 [G] ❌ 6S0Z_M_B
N:44 [ARG] 9:5 [G] M:41 [TYR] B:5 [G] ❌ 6S0Z_M_B
N:44 [ARG] 9:120 [A] M:41 [TYR] B:112 [A] ❌ 6S0Z_M_B
N:110 [THR] 9:48 [C] M:102 [HIS] B:47 [C] ❌ 1YHQ_N_9
N:37 [ARG] 9:27 [C] M:34 [TYR] B:26 [C] ❌ 1YHQ_N_9
N:37 [ARG] 9:28 [U] M:34 [TYR] B:27 [A] ❌ 1YHQ_N_9
N:37 [ARG] 9:4 [G] M:34 [TYR] B:4 [G] ❌ 1YHQ_N_9
N:38 [LYS] 9:46 [C] M:35 [ARG] B:45 [C] ❌ 1YHQ_N_9
N:44 [ARG] 9:27 [C] M:41 [TYR] B:26 [C] ❌ 1YHQ_N_9
N:44 [ARG] 9:26 [C] M:41 [TYR] B:25 [A] ❌ 1YHQ_N_9
N:46 [GLN] 9:118 [C] M:43 [GLN] B:110 [C] ❌ 1YHQ_N_9
N:77 [ASN] 9:51 [A] M:69 [LYS] B:50 [A] ❌ 1YHQ_N_9
N:20 [TYR] 9:10 [C] M:16 [ALA] B:10 [U] ❌ 6S0Z_M:16, 6S0Z_B:10 no longer at interface
N:64 [SER] 9:121 [C] M:59 [LYS] B:113 [G] ❌ 1YHQ_N:64, 1YHQ_9:121 no longer at interface
N:15 [GLU] 9:59 [C] M:9 [LYS] B:58 [C] ❌ 1YHQ_N:15, 1YHQ_9:59 no longer at interface
N:15 [GLU] 9:58 [G] M:9 [LYS] B:57 [G] ❌ 1YHQ_N:15, 1YHQ_9:58 no longer at interface
N:20 [TYR] 9:7 [G] M:16 [ALA] B:7 [G] ❌ 6S0Z_M:16 no longer at interface
N:20 [TYR] 9:8 [G] M:16 [ALA] B:8 [A] ❌ 6S0Z_M:16 no longer at interface
N:79 [PRO] 9:49 [G] M:71 [GLU] B:48 [A] ❌ 6S0Z_M:71 no longer at interface
N:115 [VAL] 9:48 [C] M:105 [VAL] B:47 [C] ❌ 6S0Z_M:105 no longer at interface
N:18 [THR] 9:7 [G] M:13 [LYS] B:7 [G] ❌ 6S0Z_M:13 no longer at interface
N:62 [HIS] 9:27 [C] M:57 [SER] B:26 [C] ❌ 6S0Z_M:57 no longer at interface
N:62 [HIS] 9:120 [A] M:57 [SER] B:112 [A] ❌ 6S0Z_M:57 no longer at interface
N:52 [PRO] 9:8 [G] M:49 [LYS] B:8 [A] ❌ 6S0Z_M:49 no longer at interface
N:19 [ASP] 9:6 [C] M:15 [HIS] B:6 [U] ❌ 1YHQ_N:19 no longer at interface
N:19 [ASP] 9:7 [G] M:15 [HIS] B:7 [G] ❌ 1YHQ_N:19 no longer at interface
N:50 [LEU] 9:6 [C] M:47 [ASP] B:6 [U] ❌ 1YHQ_N:50 no longer at interface
N:50 [LEU] 9:7 [G] M:47 [ASP] B:7 [G] ❌ 1YHQ_N:50 no longer at interface
N:64 [SER] 9:25 [G] M:59 [LYS] B:24 [C] ❌ 1YHQ_N:64 no longer at interface
N:64 [SER] 9:26 [C] M:59 [LYS] B:25 [A] ❌ 1YHQ_N:64 no longer at interface
N:75 [THR] 9:50 [G] M:67 [ALA] B:49 [G] ❌ 1YHQ_N:75 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 5S ribosomal RNA 0.83 1.98 0.24 0.76 0.78 0.73 0.85 0.70 0.60 0.29 0.39


Other pairs involving 1YHQ_N_9 or 6S0Z_M_B

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_9 1YHQ_N_9 1.00 1.0 0.19 1.0 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 4Y4O_1S_1B 0.65 0.87 2.31 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6AZ3_O_8 0.87 0.9 1.8 0.44 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6S0Z_M_B 0.70 0.83 1.98 0.24 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 6S0Z_M_B 0.65 0.84 2.28 0.22 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6S0Z_M_B 0.71 0.83 2.22 0.24 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6S0Z_M_B 0.82 0.89 1.29 0.51 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7O7Y_BD_B7 0.86 0.91 1.71 0.37 Ribonuclease H-like 5S ribosomal RNA compare
6S0Z_M_B 7O7Y_BD_B7 0.57 0.83 2.02 0.16 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 7O9M_P_B 0.66 0.55 1.72 0.1 Ribonuclease H-like compare
6S0Z_M_B 7O9M_P_B 0.64 0.53 2.99 0.15 Ribonuclease H-like compare
1YHQ_N_9 7OF0_P_B 0.69 0.56 1.79 0.11 Ribonuclease H-like compare
6S0Z_M_B 7OF0_P_B 0.64 0.54 2.86 0.16 Ribonuclease H-like compare
1YHQ_N_9 7RYG_N_B 0.65 0.86 1.69 0.18 Ribonuclease H-like 5S ribosomal RNA compare
6S0Z_M_B 7RYG_N_B 0.74 0.9 1.66 0.41 Ribonuclease H-like 5S ribosomal RNA compare