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All interfaces > All interologs > Interface groups > group123 > 4Y4O_1S_1B

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4Y4O_1S
4Y4O_1B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1S:7 [TYR] 1B:47 [C] 4.75 50.3
1S:10 [ARG] 1B:46 [A] 4.95 1B:39 [A] 82.5
1S:10 [ARG] 1B:47 [C] 3.48 82.5
1S:11 [LYS] 1B:7 [G] 4.94 1B:114 [C] 55.1
1S:11 [LYS] 1B:8 [U] 2.93 1B:113 [G] 55.1
1S:15 [ARG] 1B:7 [G] 4.74 1B:114 [C] 73.9
1S:15 [ARG] 1B:8 [U] 2.99 1B:113 [G] 73.9
1S:15 [ARG] 1B:9 [G] 3.28 1B:112 [U] 73.9
1S:19 [LYS] 1B:8 [U] 4.75 1B:113 [G] 4.5
1S:19 [LYS] 1B:9 [G] 2.94 1B:112 [U] 4.5
1S:25 [ARG] 1B:8 [U] 2.39 1B:113 [G] sugar:SC 95.4
1S:25 [ARG] 1B:9 [G] 3.14 1B:112 [U] 95.4
1S:27 [SER] 1B:7 [G] 4.91 1B:114 [C] 5.6
1S:27 [SER] 1B:8 [U] 3.89 1B:113 [G] 5.6
1S:29 [PHE] 1B:6 [C] 3.7 1B:115 [G] 42.2
1S:29 [PHE] 1B:7 [G] 3.51 1B:114 [C] 42.2
1S:29 [PHE] 1B:28 [C] 4.2 1B:56 [G] 42.2
1S:29 [PHE] 1B:29 [A] 4.52 1B:55 [U] 42.2
1S:30 [ARG] 1B:29 [A] 4.13 1B:55 [U] 74.8
1S:30 [ARG] 1B:48 [A] 2.89 1B:34 [U] 74.8
1S:30 [ARG] 1B:49 [C] 3.71 1B:33 [G] 74.8
1S:31 [SER] 1B:27 [C] 4.86 1B:24 [G] 99.0
1S:31 [SER] 1B:28 [C] 2.45 1B:56 [G] 99.0
1S:31 [SER] 1B:29 [A] 3.3 1B:55 [U] 99.0
1S:32 [LEU] 1B:28 [C] 5.0 1B:56 [G] 83.1
1S:32 [LEU] 1B:29 [A] 2.98 1B:55 [U] 83.1
1S:32 [LEU] 1B:30 [C] 3.56 1B:54 [G] 83.1
1S:32 [LEU] 1B:31 [C] 3.7 1B:51 [G] 83.1
1S:32 [LEU] 1B:51 [G] 3.92 1B:31 [C] 83.1
1S:32 [LEU] 1B:52 [A] 3.8 1B:53 [A] 83.1
1S:33 [LYS] 1B:27 [C] 3.95 1B:24 [G] 57.9
1S:33 [LYS] 1B:28 [C] 4.11 1B:56 [G] 57.9
1S:33 [LYS] 1B:29 [A] 4.69 1B:55 [U] 57.9
1S:33 [LYS] 1B:52 [A] 3.58 1B:53 [A] 57.9
1S:34 [HIS] 1B:27 [C] 3.86 1B:24 [G] 76.7
1S:34 [HIS] 1B:28 [C] 3.64 1B:56 [G] 76.7
1S:36 [TYR] 1B:6 [C] 4.75 1B:115 [G] 54.7
1S:36 [TYR] 1B:27 [C] 2.97 1B:24 [G] 54.7
1S:36 [TYR] 1B:28 [C] 2.4 1B:56 [G] 54.7
1S:36 [TYR] 1B:116 [G] 4.93 1B:5 [C] 54.7
1S:38 [GLN] 1B:7 [G] 3.0 1B:114 [C] base:SC, base:SC, sugar:SC 92.6
1S:38 [GLN] 1B:8 [U] 3.74 1B:113 [G] 92.6
1S:38 [GLN] 1B:114 [C] 4.88 1B:7 [G] 92.6
1S:38 [GLN] 1B:115 [G] 4.18 1B:6 [C] 92.6
1S:40 [ILE] 1B:8 [U] 3.25 1B:113 [G] 87.4
1S:42 [ASP] 1B:8 [U] 4.56 1B:113 [G] 79.2
1S:42 [ASP] 1B:9 [G] 4.29 1B:112 [U] 79.2
1S:45 [GLY] 1B:9 [G] 4.14 1B:112 [U] 52.4
1S:45 [GLY] 1B:113 [G] 2.6 1B:8 [U] base:BB 52.4
1S:45 [GLY] 1B:114 [C] 3.77 1B:7 [G] 52.4
1S:46 [VAL] 1B:113 [G] 4.14 1B:8 [U] 33.7
1S:46 [VAL] 1B:114 [C] 3.29 1B:7 [G] 33.7
1S:47 [THR] 1B:7 [G] 3.9 1B:114 [C] 84.8
1S:47 [THR] 1B:114 [C] 2.83 1B:7 [G] base:SC, sugar:BB 84.8
1S:47 [THR] 1B:115 [G] 3.41 1B:6 [C] 84.8
1S:50 [SER] 1B:115 [G] 2.53 1B:6 [C] sugar:SC 66.7
1S:50 [SER] 1B:116 [G] 4.08 1B:5 [C] 66.7
1S:52 [SER] 1B:116 [G] 3.75 1B:5 [C] 87.7
1S:54 [LEU] 1B:26 [A] 4.93 33.9
1S:54 [LEU] 1B:27 [C] 3.57 1B:24 [G] 33.9
1S:54 [LEU] 1B:117 [G] 3.65 1B:4 [C] 33.9
1S:55 [ALA] 1B:116 [G] 4.28 1B:5 [C] 34.1
1S:55 [ALA] 1B:117 [G] 3.77 1B:4 [C] 34.1
1S:60 [GLY] 1B:51 [G] 4.24 1B:31 [C] 20.1
1S:61 [ASN] 1B:50 [G] 3.55 1B:32 [C] 47.8
1S:61 [ASN] 1B:51 [G] 3.45 1B:31 [C] 47.8
1S:62 [LYS] 1B:50 [G] 3.43 1B:32 [C] 75.3
1S:62 [LYS] 1B:51 [G] 2.76 1B:31 [C] base:SC 75.3
1S:62 [LYS] 1B:52 [A] 4.71 1B:53 [A] 75.3
1S:63 [THR] 1B:49 [C] 3.67 1B:33 [G] 51.7
1S:63 [THR] 1B:50 [G] 2.7 1B:32 [C] 51.7
1S:91 [PRO] 1B:47 [C] 4.92 62.2
1S:91 [PRO] 1B:48 [A] 4.72 1B:34 [U] 62.2
1S:92 [TYR] 1B:47 [C] 4.99 44.3
1S:92 [TYR] 1B:48 [A] 3.47 1B:34 [U] 44.3
1S:93 [LYS] 1B:38 [C] 3.24 1B:44 [G] sugar:SC 41.5
1S:93 [LYS] 1B:39 [A] 4.34 1B:46 [A] 41.5
1S:93 [LYS] 1B:47 [C] 4.03 41.5
1S:93 [LYS] 1B:48 [A] 3.09 1B:34 [U] 41.5
1S:95 [HIS] 1B:37 [C] 2.82 base:SC 91.1
1S:95 [HIS] 1B:38 [C] 3.08 1B:44 [G] sugar:SC 91.1
1S:95 [HIS] 1B:48 [A] 3.14 1B:34 [U] sugar:SC 91.1
1S:95 [HIS] 1B:49 [C] 3.81 1B:33 [G] 91.1
1S:96 [GLY] 1B:48 [A] 4.42 1B:34 [U] 98.7
1S:96 [GLY] 1B:49 [C] 3.53 1B:33 [G] 98.7
1S:97 [ARG] 1B:48 [A] 4.87 1B:34 [U] 69.6
1S:97 [ARG] 1B:49 [C] 2.77 1B:33 [G] 69.6
1S:97 [ARG] 1B:50 [G] 3.67 1B:32 [C] 69.6
1S:98 [VAL] 1B:49 [C] 4.48 1B:33 [G] 79.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group123 4Y4O_1S_1B 1S: 50s ribosomal protein l18, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1B: 5s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHQ4 Ribonuclease H-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_N_9 4Y4O_1S_1B 0.65 0.87 2.31 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 4Y4O_1S_1B 0.63 0.87 2.3 0.26 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6S0Z_M_B 0.82 0.89 1.29 0.51 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6AZ3_O_8 0.59 0.83 2.82 0.2 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O7Y_BD_B7 0.57 0.83 2.76 0.14 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O9M_P_B 0.72 0.53 2.72 0.1 Ribonuclease H-like compare
4Y4O_1S_1B 7OF0_P_B 0.72 0.54 2.33 0.11 Ribonuclease H-like compare
4Y4O_1S_1B 7RYG_N_B 0.86 0.91 1.56 0.43 Ribonuclease H-like 5S ribosomal RNA compare