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All interfaces > All interologs > Interface groups > group123 > 4Y4O_1S_1B vs 6S0Z_M_B

Interface analysis


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Common contacts -

4Y4O_1S
4Y4O_1B
6S0Z_M
6S0Z_B
Conserved?
1S:93 [LYS] 1B:47 [C] M:100 [LEU] B:45 [C] ✔
1S:93 [LYS] 1B:48 [A] M:100 [LEU] B:46 [A] ✔
1S:31 [SER] 1B:27 [C] M:36 [SER] B:25 [A] ✔
1S:31 [SER] 1B:28 [C] M:36 [SER] B:26 [C] ✔
1S:31 [SER] 1B:29 [A] M:36 [SER] B:27 [A] ✔
1S:45 [GLY] 1B:9 [G] M:50 [GLY] B:7 [G] ✔
1S:45 [GLY] 1B:113 [G] M:50 [GLY] B:109 [G] ✔
1S:45 [GLY] 1B:114 [C] M:50 [GLY] B:110 [C] ✔
1S:47 [THR] 1B:7 [G] M:52 [THR] B:5 [G] ✔
1S:47 [THR] 1B:114 [C] M:52 [THR] B:110 [C] ✔
1S:47 [THR] 1B:115 [G] M:52 [THR] B:111 [C] ✔
1S:61 [ASN] 1B:50 [G] M:68 [THR] B:48 [A] ✔
1S:61 [ASN] 1B:51 [G] M:68 [THR] B:49 [G] ✔
1S:27 [SER] 1B:7 [G] M:32 [ASN] B:5 [G] ✔
1S:27 [SER] 1B:8 [U] M:32 [ASN] B:6 [U] ✔
1S:92 [TYR] 1B:48 [A] M:99 [TYR] B:46 [A] ✔
1S:96 [GLY] 1B:48 [A] M:103 [GLY] B:46 [A] ✔
1S:96 [GLY] 1B:49 [C] M:103 [GLY] B:47 [C] ✔
1S:11 [LYS] 1B:8 [U] M:15 [HIS] B:6 [U] ✔
1S:97 [ARG] 1B:49 [C] M:104 [ARG] B:47 [C] ✔
1S:34 [HIS] 1B:27 [C] M:39 [HIS] B:25 [A] ✔
1S:34 [HIS] 1B:28 [C] M:39 [HIS] B:26 [C] ✔
1S:29 [PHE] 1B:6 [C] M:34 [TYR] B:4 [G] ✔
1S:29 [PHE] 1B:7 [G] M:34 [TYR] B:5 [G] ✔
1S:29 [PHE] 1B:28 [C] M:34 [TYR] B:26 [C] ✔
1S:29 [PHE] 1B:29 [A] M:34 [TYR] B:27 [A] ✔
1S:36 [TYR] 1B:27 [C] M:41 [TYR] B:25 [A] ✔
1S:36 [TYR] 1B:28 [C] M:41 [TYR] B:26 [C] ✔
1S:50 [SER] 1B:115 [G] M:55 [GLN] B:111 [C] ✔
1S:50 [SER] 1B:116 [G] M:55 [GLN] B:112 [A] ✔
1S:40 [ILE] 1B:8 [U] M:45 [ILE] B:6 [U] ✔
1S:38 [GLN] 1B:7 [G] M:43 [GLN] B:5 [G] ✔
1S:38 [GLN] 1B:8 [U] M:43 [GLN] B:6 [U] ✔
1S:38 [GLN] 1B:114 [C] M:43 [GLN] B:110 [C] ✔
1S:38 [GLN] 1B:115 [G] M:43 [GLN] B:111 [C] ✔
1S:32 [LEU] 1B:28 [C] M:37 [ASN] B:26 [C] ✔
1S:32 [LEU] 1B:29 [A] M:37 [ASN] B:27 [A] ✔
1S:32 [LEU] 1B:30 [C] M:37 [ASN] B:28 [C] ✔
1S:32 [LEU] 1B:31 [C] M:37 [ASN] B:29 [C] ✔
1S:32 [LEU] 1B:51 [G] M:37 [ASN] B:49 [G] ✔
1S:32 [LEU] 1B:52 [A] M:37 [ASN] B:50 [A] ✔
1S:42 [ASP] 1B:8 [U] M:47 [ASP] B:6 [U] ✔
1S:42 [ASP] 1B:9 [G] M:47 [ASP] B:7 [G] ✔
1S:60 [GLY] 1B:51 [G] M:67 [ALA] B:49 [G] ✔
1S:30 [ARG] 1B:48 [A] M:35 [ARG] B:46 [A] ✔
1S:30 [ARG] 1B:49 [C] M:35 [ARG] B:47 [C] ✔
1S:62 [LYS] 1B:50 [G] M:69 [LYS] B:48 [A] ✔
1S:62 [LYS] 1B:51 [G] M:69 [LYS] B:49 [G] ✔
1S:62 [LYS] 1B:52 [A] M:69 [LYS] B:50 [A] ✔
1S:25 [ARG] 1B:8 [U] M:30 [ARG] B:6 [U] ✔
1S:25 [ARG] 1B:9 [G] M:30 [ARG] B:7 [G] ✔
1S:33 [LYS] 1B:52 [A] M:38 [LYS] B:50 [A] ✔
1S:15 [ARG] 1B:9 [G] M:19 [ARG] B:7 [G] ✔
1S:95 [HIS] 1B:37 [C] M:102 [HIS] B:35 [C] ✔
1S:95 [HIS] 1B:38 [C] M:102 [HIS] B:36 [C] ✔
1S:95 [HIS] 1B:48 [A] M:102 [HIS] B:46 [A] ✔
1S:95 [HIS] 1B:49 [C] M:102 [HIS] B:47 [C] ✔
1S:63 [THR] 1B:49 [C] M:70 [VAL] B:47 [C] ✔
1S:63 [THR] 1B:50 [G] M:70 [VAL] B:48 [A] ✔
1S:54 [LEU] 1B:26 [A] M:59 [LYS] B:24 [C] ✔
1S:54 [LEU] 1B:27 [C] M:59 [LYS] B:25 [A] ✔
1S:54 [LEU] 1B:117 [G] M:59 [LYS] B:113 [G] ✔
1S:46 [VAL] 1B:113 [G] M:51 [VAL] B:109 [G] ✔
1S:46 [VAL] 1B:114 [C] M:51 [VAL] B:110 [C] ✔
1S:93 [LYS] 1B:38 [C] M:100 [LEU] B:36 [C] ❌ 6S0Z_M_B
1S:7 [TYR] 1B:47 [C] M:11 [ARG] B:45 [C] ❌ 6S0Z_M_B
1S:92 [TYR] 1B:47 [C] M:99 [TYR] B:45 [C] ❌ 6S0Z_M_B
1S:11 [LYS] 1B:7 [G] M:15 [HIS] B:5 [G] ❌ 6S0Z_M_B
1S:97 [ARG] 1B:48 [A] M:104 [ARG] B:46 [A] ❌ 6S0Z_M_B
1S:97 [ARG] 1B:50 [G] M:104 [ARG] B:48 [A] ❌ 6S0Z_M_B
1S:36 [TYR] 1B:6 [C] M:41 [TYR] B:4 [G] ❌ 6S0Z_M_B
1S:36 [TYR] 1B:116 [G] M:41 [TYR] B:112 [A] ❌ 6S0Z_M_B
1S:30 [ARG] 1B:29 [A] M:35 [ARG] B:27 [A] ❌ 6S0Z_M_B
1S:33 [LYS] 1B:27 [C] M:38 [LYS] B:25 [A] ❌ 6S0Z_M_B
1S:33 [LYS] 1B:28 [C] M:38 [LYS] B:26 [C] ❌ 6S0Z_M_B
1S:33 [LYS] 1B:29 [A] M:38 [LYS] B:27 [A] ❌ 6S0Z_M_B
1S:15 [ARG] 1B:7 [G] M:19 [ARG] B:5 [G] ❌ 6S0Z_M_B
1S:15 [ARG] 1B:8 [U] M:19 [ARG] B:6 [U] ❌ 6S0Z_M_B
1S:7 [TYR] 1B:8 [U] M:11 [ARG] B:6 [U] ❌ 4Y4O_1S_1B
1S:7 [TYR] 1B:7 [G] M:11 [ARG] B:5 [G] ❌ 4Y4O_1S_1B
1S:11 [LYS] 1B:9 [G] M:15 [HIS] B:7 [G] ❌ 4Y4O_1S_1B
1S:29 [PHE] 1B:8 [U] M:34 [TYR] B:6 [U] ❌ 4Y4O_1S_1B
1S:30 [ARG] 1B:47 [C] M:35 [ARG] B:45 [C] ❌ 4Y4O_1S_1B
1S:93 [LYS] 1B:39 [A] M:100 [LEU] B:37 [A] ❌ 6S0Z_B:37 no longer at interface
1S:15 [ARG] 1B:10 [C] M:19 [ARG] B:8 [A] ❌ 4Y4O_1B:10 no longer at interface
1S:5 [THR] 1B:60 [C] M:9 [LYS] B:58 [C] ❌ 4Y4O_1S:5, 4Y4O_1B:60 no longer at interface
1S:5 [THR] 1B:59 [A] M:9 [LYS] B:57 [G] ❌ 4Y4O_1S:5, 4Y4O_1B:59 no longer at interface
1S:52 [SER] 1B:116 [G] M:57 [SER] B:112 [A] ❌ 6S0Z_M:57 no longer at interface
1S:10 [ARG] 1B:46 [A] M:14 [ARG] B:44 [A] ❌ 6S0Z_M:14 no longer at interface
1S:10 [ARG] 1B:47 [C] M:14 [ARG] B:45 [C] ❌ 6S0Z_M:14 no longer at interface
1S:91 [PRO] 1B:47 [C] M:98 [GLY] B:45 [C] ❌ 6S0Z_M:98 no longer at interface
1S:91 [PRO] 1B:48 [A] M:98 [GLY] B:46 [A] ❌ 6S0Z_M:98 no longer at interface
1S:55 [ALA] 1B:116 [G] M:60 [ASP] B:112 [A] ❌ 6S0Z_M:60 no longer at interface
1S:55 [ALA] 1B:117 [G] M:60 [ASP] B:113 [G] ❌ 6S0Z_M:60 no longer at interface
1S:19 [LYS] 1B:8 [U] M:23 [SER] B:6 [U] ❌ 6S0Z_M:23 no longer at interface
1S:19 [LYS] 1B:9 [G] M:23 [SER] B:7 [G] ❌ 6S0Z_M:23 no longer at interface
1S:98 [VAL] 1B:49 [C] M:105 [VAL] B:47 [C] ❌ 6S0Z_M:105 no longer at interface
1S:8 [GLU] 1B:8 [U] M:12 [LEU] B:6 [U] ❌ 4Y4O_1S:8 no longer at interface
1S:88 [ASP] 1B:9 [G] M:95 [ASP] B:7 [G] ❌ 4Y4O_1S:88 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 5S ribosomal RNA 0.89 1.29 0.51 0.88 0.83 0.83 0.96 0.82 0.66 0.36 0.46


Other pairs involving 4Y4O_1S_1B or 6S0Z_M_B

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_N_9 4Y4O_1S_1B 0.63 0.87 2.3 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1VQ8_N_9 6S0Z_M_B 0.71 0.83 2.22 0.24 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 4Y4O_1S_1B 0.65 0.87 2.31 0.26 Ribonuclease H-like 5S ribosomal RNA compare
1YHQ_N_9 6S0Z_M_B 0.70 0.83 1.98 0.24 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6S0Z_M_B 0.82 0.89 1.29 0.51 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 6AZ3_O_8 0.59 0.83 2.82 0.2 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O7Y_BD_B7 0.57 0.83 2.76 0.14 Ribonuclease H-like 5S ribosomal RNA compare
4Y4O_1S_1B 7O9M_P_B 0.72 0.53 2.72 0.1 Ribonuclease H-like compare
4Y4O_1S_1B 7OF0_P_B 0.72 0.54 2.33 0.11 Ribonuclease H-like compare
4Y4O_1S_1B 7RYG_N_B 0.86 0.91 1.56 0.43 Ribonuclease H-like 5S ribosomal RNA compare
6AZ3_O_8 6S0Z_M_B 0.65 0.84 2.28 0.22 Ribonuclease H-like 5S ribosomal RNA compare
6S0Z_M_B 7OF0_P_B 0.64 0.54 2.86 0.16 Ribonuclease H-like compare
6S0Z_M_B 7O9M_P_B 0.64 0.53 2.99 0.15 Ribonuclease H-like compare
6S0Z_M_B 7O7Y_BD_B7 0.57 0.83 2.02 0.16 Ribonuclease H-like 5S ribosomal RNA compare
6S0Z_M_B 7RYG_N_B 0.74 0.9 1.66 0.41 Ribonuclease H-like 5S ribosomal RNA compare